Carubv10019223m.g (Capsella rubella)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02365 (NAM) IPR003441 Carubv10019223m.g T297525_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NAC066
M00978_2.00 		Arabidopsis thaliana
NBNNHNBNNN
NNNVNDNNVN		 PBM
Lindemose et al.(2014)
NST2 		0.955 0.947
NAC043
M02370_2.00 		Arabidopsis thaliana
NTTACGYWAN
NTWRCGTAAN		 PBM
Weirauch et al.(2014)
pTH8161 		0.954 0.930
NAC043
M07192_2.00 		Arabidopsis thaliana
TRCKTVHDNHNYAMG
CKTRNDNHDBAMGYA		 Dap-seq
OMalley et al.(2016)
NST1_colamp_a 		0.954 0.930
NAC043
M07193_2.00 		Arabidopsis thaliana
RCKTVHDNHNYAMGYWA
TWRCKTRNDNHDBAMGY		 Dap-seq
OMalley et al.(2016)
NST1_col_v31 		0.954 0.930
OS06G0131700
M02378_2.00 		Oryza sativa
NNNNHMDNND
HNNHKDNNNN		 PBM
Weirauch et al.(2014)
pTH8356 		0.926 0.860
MDP0000762302
M02383_2.00 		Malus domestica
NNNAMKHNWN
NWNDMKTNNN		 PBM
Weirauch et al.(2014)
pTH9205 		0.916 0.895
NAC012
M00971_2.00 		Arabidopsis thaliana
NYAMGYHANN
NNTDRCKTRN		 PBM
Lindemose et al.(2014)
SND1 		0.907 0.877
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10019223m NAC/NAM 12 139

Links

Other NAC/NAM family TFs
Other Capsella rubella TFs

164 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.0483s0052 Capsella grandiflora Cagra.0483s0052 I 0.972
Bra003478 Brassica rapa Bra003478 I 0.969
Bra007640 Brassica rapa Bra007640 I 0.969
Bostr.13158s0196 Boechera stricta Bostr.13158s0196 I 0.969
NST2 Arabidopsis lyrata scaffold_503455.1 I 0.965
Bo6g079180 Brassica oleracea Bo6g079180 I 0.958
Bo4g197330 Brassica oleracea Bo4g197330 I 0.956
Bra040486 Brassica rapa Bra040486 I 0.956
NAC066 Arabidopsis thaliana AT3G61910 D 0.955
NST1 Arabidopsis lyrata scaffold_403649.1 I 0.954
Cagra.0050s0024 Capsella grandiflora Cagra.0050s0024 I 0.954
Carubv10023503m.g Capsella rubella Carubv10023503m.g I 0.954
Thhalv10001506m.g Eutrema salsugineum Thhalv10001506m.g I 0.954
Bostr.25993s0090 Boechera stricta Bostr.25993s0090 I 0.954
NAC043 Arabidopsis thaliana AT2G46770 D 0.954
Bo4g006990 Brassica oleracea Bo4g006990 I 0.954
Bra004509 Brassica rapa Bra004509 I 0.954
gene18636-v1.0-hybrid Fragaria vesca gene18636-v1.0-hybrid I 0.951
MDP0000563165 Malus domestica MDP0000563165 I 0.951
Pm018292 Prunus mume Pm018292 I 0.951
PRUPE_ppa020746mg Prunus persica PRUPE_ppa020746mg I 0.951
Ca_22425 Cicer arietinum Ca_22425 I 0.950
Ca_22426 Cicer arietinum Ca_22426 I 0.950
MTR_8g024480 Medicago truncatula MTR_8g024480 I 0.950
GLYMA07G05660 Glycine max GLYMA07G05660 I 0.950
Lus10002687.g Linum usitatissimum Lus10002687.g I 0.950
GLYMA16G02200 Glycine max GLYMA16G02200 I 0.950
LjSGA_027787.1 Lotus japonicus LjSGA_027787.1 I 0.950
AMTR_s00113p00077540 Amborella trichopoda AMTR_s00113p00077540 I 0.949
27964.m000369 Ricinus communis 27964.m000369 I 0.948
Lus10030205.g Linum usitatissimum Lus10030205.g I 0.948
SapurV1A.0162s0220 Salix purpurea SapurV1A.0162s0220 I 0.947
cassava33021.m1 Manihot esculenta cassava33021.m1 I 0.947
Cucsa.120870 Cucumis sativus Cucsa.120870 I 0.947
POPTR_0014s10060 Populus trichocarpa POPTR_0014s10060 I 0.947
Cla006806 Citrullus lanatus Cla006806 I 0.947
TCM_005047 Theobroma cacao TCM_005047 I 0.945
PK04961.1 Cannabis sativa PK04961.1 I 0.944
POPTR_0002s17950 Populus trichocarpa POPTR_0002s17950 I 0.944
Gorai.007G112500 Gossypium raimondii Gorai.007G112500 I 0.943
Cla011508 Citrullus lanatus Cla011508 I 0.942
Cucsa.193460 Cucumis sativus Cucsa.193460 I 0.942
Aquca_037_00272 Aquilegia coerulea Aquca_037_00272 I 0.941
Gorai.001G150800 Gossypium raimondii Gorai.001G150800 I 0.940
GSMUA_Achr3G12230_001 Musa acuminata GSMUA_Achr3G12230_001 I 0.940
Eucgr.D01671 Eucalyptus grandis Eucgr.D01671 I 0.939
VIT_15s0048g02660 Vitis vinifera VIT_15s0048g02660 I 0.938
GSMUA_Achr9G24450_001 Musa acuminata GSMUA_Achr9G24450_001 I 0.938
GSMUA_AchrUn_randomG21980_001 Musa acuminata GSMUA_AchrUn_randomG21980_001 I 0.937
Ciclev10024035m.g Citrus clementina Ciclev10024035m.g I 0.936
orange1.1g015853m.g Citrus sinensis orange1.1g015853m.g I 0.936
ANAC012 Vitis vinifera VIT_02s0025g02710 I 0.936
PDK_20s1408241g001 Phoenix dactylifera PDK_20s1408241g001 I 0.934
mgf022455m Mimulus guttatus mgf022455m I 0.929
GSMUA_Achr7G05980_001 Musa acuminata GSMUA_Achr7G05980_001 I 0.928
SapurV1A.0003s0530 Salix purpurea SapurV1A.0003s0530 I 0.927
OPUNC06G01800 Oryza punctata OPUNC06G01800 I 0.926
OBART06G01950 Oryza barthii OBART06G01950 I 0.926
BGIOSGA022006 Oryza indica BGIOSGA022006 I 0.926
OGLUM06G01950 Oryza glumaepatula OGLUM06G01950 I 0.926
ORGLA06G0019800 Oryza glaberrima ORGLA06G0019800 I 0.926
ORUFI06G01950 Oryza rufipogon ORUFI06G01950 I 0.926
OS06G0131700 Oryza sativa OS06G0131700 D 0.926
LPERR06G01790 Leersia perrieri LPERR06G01790 I 0.926
OMERI06G01850 Oryza meridionalis OMERI06G01850 I 0.926
OB06G11970 Oryza brachyantha OB06G11970 I 0.926
ONIVA06G02290 Oryza nivara ONIVA06G02290 I 0.926
Traes_7AL_B000BC0DD Triticum aestivum Traes_7AL_B000BC0DD I 0.925
Pavir.J20698 Panicum virgatum Pavir.J20698 I 0.925
MLOC_66924 Hordeum vulgare MLOC_66924 I 0.925
GRMZM2G092465 Zea mays GRMZM2G092465 I 0.925
Pavir.J21162 Panicum virgatum Pavir.J21162 I 0.925
Traes_7DL_1AD9A3E8D Triticum aestivum Traes_7DL_1AD9A3E8D I 0.925
Sb07g001550 Sorghum bicolor Sb07g001550 I 0.925
F775_11081 Aegilops tauschii F775_11081 I 0.925
GRMZM2G171395 Zea mays GRMZM2G171395 I 0.923
Sb10g002120 Sorghum bicolor Sb10g002120 I 0.923
Pavir.J07835 Panicum virgatum Pavir.J07835 I 0.922
Si006565m.g Setaria italica Si006565m.g I 0.922
OPUNC08G01110 Oryza punctata OPUNC08G01110 I 0.921
OBART08G01110 Oryza barthii OBART08G01110 I 0.921
OB08G11290 Oryza brachyantha OB08G11290 I 0.921
ORGLA08G0004900 Oryza glaberrima ORGLA08G0004900 I 0.921
OGLUM08G01180 Oryza glumaepatula OGLUM08G01180 I 0.921
BGIOSGA027883 Oryza indica BGIOSGA027883 I 0.921
OS08G0115800 Oryza sativa OS08G0115800 I 0.921
ORUFI08G01170 Oryza rufipogon ORUFI08G01170 I 0.921
ONIVA08G01130 Oryza nivara ONIVA08G01130 I 0.921
cassava32649.m1 Manihot esculenta cassava32649.m1 I 0.920
LPERR08G01440 Leersia perrieri LPERR08G01440 I 0.919
OMERI08G01360 Oryza meridionalis OMERI08G01360 I 0.918
Gorai.008G130300 Gossypium raimondii Gorai.008G130300 I 0.918
POPTR_0001s45250 Populus trichocarpa POPTR_0001s45250 I 0.917
SapurV1A.0941s0070 Salix purpurea SapurV1A.0941s0070 I 0.917
SapurV1A.2717s0010 Salix purpurea SapurV1A.2717s0010 I 0.917
GRMZM2G069047 Zea mays GRMZM2G069047 I 0.916
MDP0000140229 Malus domestica MDP0000140229 I 0.916
MDP0000762302 Malus domestica MDP0000762302 D 0.916
BRADI3G13727 Brachypodium distachyon BRADI3G13727 I 0.915
PK22182.1 Cannabis sativa PK22182.1 I 0.914
SapurV1A.0131s0060 Salix purpurea SapurV1A.0131s0060 I 0.914
POPTR_0011s15640 Populus trichocarpa POPTR_0011s15640 I 0.914
Eucgr.E01053 Eucalyptus grandis Eucgr.E01053 I 0.914
Ciclev10021141m.g Citrus clementina Ciclev10021141m.g I 0.912
Gorai.008G259700 Gossypium raimondii Gorai.008G259700 I 0.912
gene01881-v1.0-hybrid Fragaria vesca gene01881-v1.0-hybrid I 0.912
30068.m002591 Ricinus communis 30068.m002591 I 0.912
cassava42638.valid.m1 Manihot esculenta cassava42638.valid.m1 I 0.912
TCM_015621 Theobroma cacao TCM_015621 I 0.912
orange1.1g014260m.g Citrus sinensis orange1.1g014260m.g I 0.912
Gorai.004G129200 Gossypium raimondii Gorai.004G129200 I 0.911
Pm024260 Prunus mume Pm024260 I 0.911
PRUPE_ppa006801mg Prunus persica PRUPE_ppa006801mg I 0.911
evm.TU.supercontig_37.89 Carica papaya evm.TU.supercontig_37.89 I 0.910
Lus10017340.g Linum usitatissimum Lus10017340.g I 0.910
Lus10001664.g Linum usitatissimum Lus10001664.g I 0.910
gene18635-v1.0-hybrid Fragaria vesca gene18635-v1.0-hybrid I 0.908
Bostr.3359s0081 Boechera stricta Bostr.3359s0081 I 0.908
Thhalv10009336m.g Eutrema salsugineum Thhalv10009336m.g I 0.907
ANAC012 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1002619 I 0.907
Gorai.003G077700 Gossypium raimondii Gorai.003G077700 I 0.907
Lus10008271.g Linum usitatissimum Lus10008271.g I 0.907
Lus10033239.g Linum usitatissimum Lus10033239.g I 0.907
Cagra.14513s0001 Capsella grandiflora Cagra.14513s0001 I 0.907
cassava45846.m1 Manihot esculenta cassava45846.m1 I 0.907
NAC012 Arabidopsis thaliana AT1G32770 D 0.907
Carubv10011900m.g Capsella rubella Carubv10011900m.g I 0.907
Bo5g049360 Brassica oleracea Bo5g049360 I 0.906
GRMZM2G091490 Zea mays GRMZM2G091490 I 0.905
Bra023288 Brassica rapa Bra023288 I 0.903
PGSC0003DMG400011268 Solanum tuberosum PGSC0003DMG400011268 I 0.900
Gorai.006G205300 Gossypium raimondii Gorai.006G205300 I 0.900
Solyc10g005010.2 Solanum lycopersicum Solyc10g005010.2 I 0.900
GSMUA_Achr2G20020_001 Musa acuminata GSMUA_Achr2G20020_001 I 0.898
Bra010183 Brassica rapa Bra010183 I 0.898
Bo5g086900 Brassica oleracea Bo5g086900 I 0.898
GSMUA_Achr10G14400_001 Musa acuminata GSMUA_Achr10G14400_001 I 0.895
Aquca_030_00252 Aquilegia coerulea Aquca_030_00252 I 0.893
AMTR_s00068p00207380 Amborella trichopoda AMTR_s00068p00207380 I 0.889
orange1.1g018596m.g Citrus sinensis orange1.1g018596m.g I 0.885
Ciclev10006988m.g Citrus clementina Ciclev10006988m.g I 0.881
TCM_014939 Theobroma cacao TCM_014939 I 0.881
Eucgr.A02887 Eucalyptus grandis Eucgr.A02887 I 0.881
mgf021916m Mimulus guttatus mgf021916m I 0.881
Gorai.001G048200 Gossypium raimondii Gorai.001G048200 I 0.881
Lus10030143.g Linum usitatissimum Lus10030143.g I 0.880
Aquca_013_00692 Aquilegia coerulea Aquca_013_00692 I 0.879
Cla006372 Citrullus lanatus Cla006372 I 0.877
Cucsa.251620 Cucumis sativus Cucsa.251620 I 0.877
Lus10009939.g Linum usitatissimum Lus10009939.g I 0.877
TRIUR3_14543 Triticum urartu TRIUR3_14543 I 0.876
PGSC0003DMG400021576 Solanum tuberosum PGSC0003DMG400021576 I 0.876
POPTR_0015s14770 Populus trichocarpa POPTR_0015s14770 I 0.876
PRUPE_ppa020139mg Prunus persica PRUPE_ppa020139mg I 0.876
Solyc06g034340.1 Solanum lycopersicum Solyc06g034340.1 I 0.876
30147.m014211 Ricinus communis 30147.m014211 I 0.876
F775_21627 Aegilops tauschii F775_21627 I 0.876
Pm019488 Prunus mume Pm019488 I 0.876
Pm019490 Prunus mume Pm019490 I 0.876
VIT_16s0022g00690 Vitis vinifera VIT_16s0022g00690 I 0.876
cassava47039.m1 Manihot esculenta cassava47039.m1 I 0.875
TRIUR3_27911 Triticum urartu TRIUR3_27911 I 0.874
evm.TU.supercontig_3.311 Carica papaya evm.TU.supercontig_3.311 I 0.874
POPTR_0012s14660 Populus trichocarpa POPTR_0012s14660 I 0.871