Pavir.Ia03759 (Panicum virgatum)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04542 (Sigma70_r2) IPR007627 Pavir.Ia03759 T324231_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ia03759.1.p Sigma 70 293 362

Links

Other Sigma 70 family TFs
Other Panicum virgatum TFs

71 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pavir.J38369 Panicum virgatum Pavir.J38369 N 0.971
Sb01g039810 Sorghum bicolor Sb01g039810 N 0.957
GRMZM2G100086 Zea mays GRMZM2G100086 N 0.943
GRMZM2G003182 Zea mays GRMZM2G003182 N 0.943
Si035112m.g Setaria italica Si035112m.g N 0.943
GRMZM2G164084 Zea mays GRMZM2G164084 N 0.943
OPUNC03G11670 Oryza punctata OPUNC03G11670 N 0.929
OBART03G12110 Oryza barthii OBART03G12110 N 0.929
OS03G0271100 Oryza sativa OS03G0271100 N 0.929
OLONG_007716 Oryza longistaminata OLONG_007716 N 0.929
BRADI1G66830 Brachypodium distachyon BRADI1G66830 N 0.929
ONIVA03G13860 Oryza nivara ONIVA03G13860 N 0.929
ORGLA03G0116800 Oryza glaberrima ORGLA03G0116800 N 0.929
OB03G22220 Oryza brachyantha OB03G22220 N 0.929
BGIOSGA012312 Oryza indica BGIOSGA012312 N 0.929
Traes_4DL_65B3128BF Triticum aestivum Traes_4DL_65B3128BF N 0.914
OS11G0448400 Oryza sativa OS11G0448400 N 0.914
Traes_4AS_26117D669 Triticum aestivum Traes_4AS_26117D669 N 0.914
Traes_4AL_26117D669 Triticum aestivum Traes_4AL_26117D669 N 0.914
Traes_4AS_DE644E0CF Triticum aestivum Traes_4AS_DE644E0CF N 0.914
Traes_4BL_9CB9E3F96 Triticum aestivum Traes_4BL_9CB9E3F96 N 0.914
ORUFI11G13080 Oryza rufipogon ORUFI11G13080 N 0.914
ORGLA11G0105900 Oryza glaberrima ORGLA11G0105900 N 0.914
OB11G19800 Oryza brachyantha OB11G19800 N 0.914
F775_32094 Aegilops tauschii F775_32094 N 0.914
F775_14570 Aegilops tauschii F775_14570 N 0.914
BRADI4G19540 Brachypodium distachyon BRADI4G19540 N 0.914
BGIOSGA015860 Oryza indica BGIOSGA015860 N 0.914
OLONG_012202 Oryza longistaminata OLONG_012202 N 0.914
TRIUR3_30646 Triticum urartu TRIUR3_30646 N 0.914
OGLUM11G12180 Oryza glumaepatula OGLUM11G12180 N 0.914
MLOC_59299 Hordeum vulgare MLOC_59299 N 0.914
LPERR11G10050 Leersia perrieri LPERR11G10050 N 0.914
Traes_4DL_B8D22E4C2 Triticum aestivum Traes_4DL_B8D22E4C2 N 0.914
Pavir.J05262 Panicum virgatum Pavir.J05262 N 0.900
Si026193m.g Setaria italica Si026193m.g N 0.900
Sb0010s016080 Sorghum bicolor Sb0010s016080 N 0.900
OPUNC11G10590 Oryza punctata OPUNC11G10590 N 0.900
Pavir.Hb00670 Panicum virgatum Pavir.Hb00670 N 0.887
GRMZM2G143392 Zea mays GRMZM2G143392 N 0.871
Gorai.007G347300 Gossypium raimondii Gorai.007G347300 N 0.729
evm.TU.supercontig_73.29 Carica papaya evm.TU.supercontig_73.29 N 0.714
30148.m001412 Ricinus communis 30148.m001412 N 0.714
gene17946-v1.0-hybrid Fragaria vesca gene17946-v1.0-hybrid N 0.714
Cla007091 Citrullus lanatus Cla007091 N 0.714
PK16345.1 Cannabis sativa PK16345.1 N 0.714
Solyc01g081490.2 Solanum lycopersicum Solyc01g081490.2 N 0.714
TCM_025741 Theobroma cacao TCM_025741 N 0.714
chr1.CM0017.250.nc Lotus japonicus chr1.CM0017.250.nc N 0.714
PGSC0003DMG400031111 Solanum tuberosum PGSC0003DMG400031111 N 0.714
POPTR_0013s06770 Populus trichocarpa POPTR_0013s06770 N 0.714
Gorai.004G253700 Gossypium raimondii Gorai.004G253700 N 0.700
MDP0000157652 Malus domestica MDP0000157652 N 0.700
Thhalv10007187m.g Eutrema salsugineum Thhalv10007187m.g N 0.700
SapurV1A.1953s0020 Salix purpurea SapurV1A.1953s0020 N 0.700
Bra030732 Brassica rapa Bra030732 N 0.700
SIGB Arabidopsis lyrata fgenesh2_kg.1__869__AT1G08540.1 N 0.700
orange1.1g007404m.g Citrus sinensis orange1.1g007404m.g N 0.700
Bostr.25219s0090 Boechera stricta Bostr.25219s0090 N 0.700
Pm025497 Prunus mume Pm025497 N 0.700
cassava14033.valid.m1 Manihot esculenta cassava14033.valid.m1 N 0.700
SIGB Vitis vinifera VIT_15s0024g00640 N 0.700
GSMUA_Achr7G04860_001 Musa acuminata GSMUA_Achr7G04860_001 N 0.700
PRUPE_ppa006657mg Prunus persica PRUPE_ppa006657mg N 0.700
Cucsa.362600 Cucumis sativus Cucsa.362600 N 0.700
mgf015824m Mimulus guttatus mgf015824m N 0.700
Ciclev10030998m.g Citrus clementina Ciclev10030998m.g N 0.700
Carubv10008711m.g Capsella rubella Carubv10008711m.g N 0.700
Cagra.4395s0044 Capsella grandiflora Cagra.4395s0044 N 0.700
SIGB Arabidopsis thaliana AT1G08540 N 0.700
Eucgr.D01094 Eucalyptus grandis Eucgr.D01094 N 0.700