ENSLACG00000010699 (Latimeria chalumnae)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 ENSLACG00000010699 T328236_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Hmg20b
M02487_2.00 		Mus musculus
NNATTATWHWN
NWDWATAATNN		 PBM
Weirauch et al.(2014)
pTH8555 		0.540 0.594
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLACP00000012154 Sox 61 129

Links

Other Sox family TFs
Other Latimeria chalumnae TFs

160 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSLOCG00000010117 Lepisosteus oculatus ENSLOCG00000010117 I 0.658
ENSOARG00000005838 Ovis aries ENSOARG00000005838 I 0.632
ENSAMEG00000010946 Ailuropoda melanoleuca ENSAMEG00000010946 I 0.609
ENSCPOG00000020879 Cavia porcellus ENSCPOG00000020879 I 0.607
hmg20b Tetraodon nigroviridis ENSTNIG00000010630 I 0.604
eef2l2 Takifugu rubripes ENSTRUG00000017921 I 0.604
ENSGMOG00000011717 Gadus morhua ENSGMOG00000011717 I 0.598
hmg20b Oryzias latipes ENSORLG00000004640 I 0.597
ENSONIG00000004838 Oreochromis niloticus ENSONIG00000004838 I 0.597
ENSPFOG00000003017 Poecilia formosa ENSPFOG00000003017 I 0.597
hmg20b Gasterosteus aculeatus ENSGACG00000012785 I 0.597
ENSXMAG00000012647 Xiphophorus maculatus ENSXMAG00000012647 I 0.597
estExt_fgenesh2_pg.C_1350020 Branchiostoma floridae estExt_fgenesh2_pg.C_1350020 I 0.584
estExt_fgenesh2_pg.C_4800003 Branchiostoma floridae estExt_fgenesh2_pg.C_4800003 I 0.584
hmg20a Xenopus tropicalis XB-GENE-955353 I 0.583
ENSLACG00000004599 Latimeria chalumnae ENSLACG00000004599 I 0.583
ENSLOCG00000014255 Lepisosteus oculatus ENSLOCG00000014255 I 0.583
hmg20a.L Xenopus laevis XB-GENE-955359 I 0.583
SMAR000790 Strigamia maritima SMAR000790 I 0.577
hmg20a Danio rerio ENSDARG00000031198 I 0.576
estExt_fgenesh2_pg.C_2300014 Branchiostoma floridae estExt_fgenesh2_pg.C_2300014 I 0.567
estExt_fgenesh2_pg.C_2300011 Branchiostoma floridae estExt_fgenesh2_pg.C_2300011 I 0.567
Cmyd_10009674 Chelonia mydas Cmyd_10009674 I 0.564
hmg20a Gasterosteus aculeatus ENSGACG00000003466 I 0.554
hmg20a Oryzias latipes ENSORLG00000001794 I 0.554
ENSPFOG00000014087 Poecilia formosa ENSPFOG00000014087 I 0.554
ENSONIG00000012862 Oreochromis niloticus ENSONIG00000012862 I 0.554
hmg20a Takifugu rubripes ENSTRUG00000016127 I 0.554
hmg20a Tetraodon nigroviridis ENSTNIG00000008460 I 0.554
ENSAMXG00000013048 Astyanax mexicanus ENSAMXG00000013048 I 0.554
ENSXMAG00000000587 Xiphophorus maculatus ENSXMAG00000000587 I 0.554
NEMVEDRAFT_v1g105457 Nematostella vectensis NEMVEDRAFT_v1g105457 I 0.553
ENSGMOG00000015452 Gadus morhua ENSGMOG00000015452 I 0.549
NEMVEDRAFT_v1g87244 Nematostella vectensis NEMVEDRAFT_v1g87244 I 0.548
Cmyd_10002377 Chelonia mydas Cmyd_10002377 I 0.540
Alligator_sinensis_CCG000441.1 Alligator sinensis Alligator_sinensis_CCG000441.1 I 0.540
Afo_R007636 Aptenodytes forsteri Afo_R007636 I 0.540
Gfo_R007604 Geospiza fortis Gfo_R007604 I 0.540
Myotis_brandtii_HMG20B_10016321 Myotis brandtii Myotis_brandtii_HMG20B_10016321 I 0.540
HMG20B Ornithorhynchus anatinus ENSOANG00000013515 I 0.540
Hmg20b Mus musculus ENSMUSG00000020232 D 0.540
ENSOARG00000012318 Ovis aries ENSOARG00000012318 I 0.540
HMG20B Otolemur garnettii ENSOGAG00000014171 I 0.540
Pvit_08123 Pogona vitticeps Pvit_08123 I 0.540
ENSPANG00000010575 Papio anubis ENSPANG00000010575 I 0.540
hmg20b Xenopus tropicalis XB-GENE-5809048 I 0.540
ENSSTOG00000022314 Ictidomys tridecemlineatus ENSSTOG00000022314 I 0.540
HMG20B Taeniopygia guttata ENSTGUG00000000169 I 0.540
hmg20b.S Xenopus laevis XB-GENE-17338323 I 0.540
hmg20b.L Xenopus laevis XB-GENE-5809135 I 0.540
ENSSHAG00000007226 Sarcophilus harrisii ENSSHAG00000007226 I 0.540
Hmg20b Rattus norvegicus ENSRNOG00000020601 I 0.540
ENSMPUG00000003925 Mustela putorius furo ENSMPUG00000003925 I 0.540
ENSPPYG00000009378 Pongo abelii ENSPPYG00000009378 I 0.540
ENSPSIG00000010923 Pelodiscus sinensis ENSPSIG00000010923 I 0.540
HMG20B Tursiops truncatus ENSTTRG00000008832 I 0.540
Aan_R011684 Calypte anna Aan_R011684 I 0.540
HMG20B Procavia capensis ENSPCAG00000010772 I 0.540
HMG20B Callithrix jacchus ENSCJAG00000003488 I 0.540
HMG20B Gallus gallus ENSGALG00000027838 I 0.540
HMG20B Loxodonta africana ENSLAFG00000007845 I 0.540
HMG20B Canis familiaris ENSCAFG00000019215 I 0.540
ENSMEUG00000001270 Macropus eugenii ENSMEUG00000001270 I 0.540
HMG20B Cavia porcellus ENSCPOG00000010777 I 0.540
HMG20B Homo sapiens ENSG00000064961 I 0.540
ENSFALG00000011609 Ficedula albicollis ENSFALG00000011609 I 0.540
hmg20b Danio rerio ENSDARG00000042045 I 0.540
ENSCSAG00000011140 Chlorocebus sabaeus ENSCSAG00000011140 I 0.540
HMG20B Felis catus ENSFCAG00000026167 I 0.540
HMG20B Meleagris gallopavo ENSMGAG00000001362 I 0.540
HMG20B Gorilla gorilla ENSGGOG00000014805 I 0.540
HMG20B Myotis lucifugus ENSMLUG00000022392 I 0.540
ENSAPLG00000005528 Anas platyrhynchos ENSAPLG00000005528 I 0.540
ENSAMXG00000017986 Astyanax mexicanus ENSAMXG00000017986 I 0.540
HMG20B Monodelphis domestica ENSMODG00000006884 I 0.540
ENSAMEG00000005678 Ailuropoda melanoleuca ENSAMEG00000005678 I 0.540
ENSBTAG00000047668 Bos taurus ENSBTAG00000047668 I 0.540
SPU_018371 Strongylocentrotus purpuratus SPU_018371 I 0.539
SPU_004776 Strongylocentrotus purpuratus SPU_004776 I 0.539
Sakowv30005216m.g Saccoglossus kowalevskii Sakowv30005216m.g I 0.537
ENSDORG00000012598 Dipodomys ordii ENSDORG00000012598 I 0.533
LotgiG231408 Lottia gigantea LotgiG231408 I 0.514
TriadG23407 Trichoplax adhaerens TriadG23407 I 0.510
HMG20A Cavia porcellus ENSCPOG00000011704 I 0.509
HMG20A Vicugna pacos ENSVPAG00000010013 I 0.509
ENSAMEG00000008348 Ailuropoda melanoleuca ENSAMEG00000008348 I 0.509
HMG20A Dasypus novemcinctus ENSDNOG00000034143 I 0.509
HMG20A Anolis carolinensis ENSACAG00000011520 I 0.509
ENSCSAG00000014734 Chlorocebus sabaeus ENSCSAG00000014734 I 0.509
HMG20A Monodelphis domestica ENSMODG00000012113 I 0.509
HMG20A Callithrix jacchus ENSCJAG00000011131 I 0.509
ENSAPLG00000015603 Anas platyrhynchos ENSAPLG00000015603 I 0.509
ENSP00000371133 Macaca fascicularis ENSP00000371133 I 0.509
HMG20A Bos taurus ENSBTAG00000020441 I 0.509
Tal_R006697 Tyto alba Tal_R006697 I 0.509
HMG20A Canis familiaris ENSCAFG00000018061 I 0.509
Myotis_brandtii_HMG20A_10005450 Myotis brandtii Myotis_brandtii_HMG20A_10005450 I 0.509
ENSP00000336856-D1 Bos grunniens ENSP00000336856-D1 I 0.509
Cmyd_10010094 Chelonia mydas Cmyd_10010094 I 0.509
Pvit_01997 Pogona vitticeps Pvit_01997 I 0.509
Afo_R007008 Aptenodytes forsteri Afo_R007008 I 0.509
Alligator_sinensis_CCG010545.1 Alligator sinensis Alligator_sinensis_CCG010545.1 I 0.509
Brh_R011859 Buceros rhinoceros Brh_R011859 I 0.509
HMG20A Choloepus hoffmanni ENSCHOG00000012116 I 0.509
Aan_R011791 Calypte anna Aan_R011791 I 0.509
Hmg20a Dipodomys ordii ENSDORG00000000623 I 0.509
HMG20A Procavia capensis ENSPCAG00000013879 I 0.509
ENSPANG00000015844 Papio anubis ENSPANG00000015844 I 0.509
HMG20A Loxodonta africana ENSLAFG00000018273 I 0.509
ENSMEUG00000016429 Macropus eugenii ENSMEUG00000016429 I 0.509
HMG20A Tursiops truncatus ENSTTRG00000006500 I 0.509
ENSPPYG00000006683 Pongo abelii ENSPPYG00000006683 I 0.509
HMG20A Pan troglodytes ENSPTRG00000007326 I 0.509
ENSPSIG00000013006 Pelodiscus sinensis ENSPSIG00000013006 I 0.509
ENSGALG00000002746 Gallus gallus ENSGALG00000002746 I 0.509
HMG20A Meleagris gallopavo ENSMGAG00000003179 I 0.509
HMG20A Otolemur garnettii ENSOGAG00000006630 I 0.509
ENSNLEG00000008357 Nomascus leucogenys ENSNLEG00000008357 I 0.509
Hmg20a Mus musculus ENSMUSG00000032329 I 0.509
HMG20A Macaca mulatta ENSMMUG00000007430 I 0.509
ENSMPUG00000017330 Mustela putorius furo ENSMPUG00000017330 I 0.509
HMG20A Ornithorhynchus anatinus ENSOANG00000009993 I 0.509
ENSOARG00000001765 Ovis aries ENSOARG00000001765 I 0.509
HMG20A Oryctolagus cuniculus ENSOCUG00000005648 I 0.509
HMG20A Microcebus murinus ENSMICG00000011025 I 0.509
HMG20A Myotis lucifugus ENSMLUG00000011648 I 0.509
Hmg20a Rattus norvegicus ENSRNOG00000016905 I 0.509
HMG20A Gorilla gorilla ENSGGOG00000008439 I 0.509
HMG20A Homo sapiens ENSG00000140382 I 0.509
HMG20A Felis catus ENSFCAG00000022539 I 0.509
HMG20A Tupaia belangeri ENSTBEG00000015283 I 0.509
ENSFALG00000010751 Ficedula albicollis ENSFALG00000010751 I 0.509
HMG20A Echinops telfairi ENSETEG00000015812 I 0.509
ENSTSYG00000003485 Tarsius syrichta ENSTSYG00000003485 I 0.509
HMG20A Erinaceus europaeus ENSEEUG00000004472 I 0.509
ENSSTOG00000013818 Ictidomys tridecemlineatus ENSSTOG00000013818 I 0.509
HMG20A Taeniopygia guttata ENSTGUG00000003690 I 0.509
ENSSHAG00000012311 Sarcophilus harrisii ENSSHAG00000012311 I 0.509
HMG20A Sus scrofa ENSSSCG00000001871 I 0.509
ENSSSCG00000024002 Sus scrofa ENSSSCG00000024002 I 0.509
LDEC010438 Leptinotarsa decemlineata LDEC010438 I 0.503
Sakowv30033800m.g Saccoglossus kowalevskii Sakowv30033800m.g I 0.493
CGI_10028818 Crassostrea gigas CGI_10028818 I 0.484
CapteG191691 Capitella teleta CapteG191691 I 0.484
TC011144 Tribolium castaneum TC011144 N 0.481
XP_002161760.1 Hydra magnipapillata XP_002161760.1 I 0.478
XP_002158984.1 Hydra magnipapillata XP_002158984.1 I 0.478
Gfo_R004366 Geospiza fortis Gfo_R004366 I 0.478
HMG20A Sorex araneus ENSSARG00000012609 I 0.469
ENSMPUG00000007386 Mustela putorius furo ENSMPUG00000007386 I 0.468
YQE_10385 Dendroctonus ponderosae YQE_10385 I 0.464
Ocbimv22031259m.g Octopus bimaculoides Ocbimv22031259m.g I 0.462
L798_15457 Zootermopsis nevadensis L798_15457 I 0.442
CLEC002862 Cimex lectularius CLEC002862 I 0.438
SMAR002604 Strigamia maritima SMAR002604 I 0.437
LotgiG196090 Lottia gigantea LotgiG196090 I 0.436
HHAL010521-PA Halyomorpha halys HHAL010521-PA I 0.432
NV11068 Nasonia vitripennis NV11068 I 0.430
MCINX003064 Melitaea cinxia MCINX003064 I 0.426
CapteG155070 Capitella teleta CapteG155070 I 0.424