fgenesh1_pm.9__12 (Bigelowiella natans)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 fgenesh1_pm.9__12 T329852_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
JGI_V11_57311 Sox 185 227

Links

Other Sox family TFs
Other Bigelowiella natans TFs

29 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TriadG56122 Trichoplax adhaerens TriadG56122 N 0.577
PTSG_02585 Salpingoeca rosetta PTSG_02585 N 0.552
ACYPI006465 Acyrthosiphon pisum ACYPI006465 N 0.535
SPBC19G7.04 Schizosaccharomyces pombe SPBC19G7.04 N 0.530
LotgiG105193 Lottia gigantea LotgiG105193 N 0.519
TC012902 Tribolium castaneum TC012902 N 0.508
fgenesh2_pg.C_Chr_03000283 Micromonas sp RCC299 fgenesh2_pg.C_Chr_03000283 N 0.503
SPOG_02196 Schizosaccharomyces cryophilus SPOG_02196 N 0.503
SBOR_2840 Sclerotinia borealis SBOR_2840 N 0.499
LDEC009506 Leptinotarsa decemlineata LDEC009506 N 0.491
fgeneshHS_pg.scaffold_50000080 Naegleria gruberi fgeneshHS_pg.scaffold_50000080 N 0.480
DAPPUDRAFT_306626 Daphnia pulex DAPPUDRAFT_306626 N 0.475
SOCG_00309 Schizosaccharomyces octosporus SOCG_00309 N 0.472
SS1G_11040 Sclerotinia sclerotiorum SS1G_11040 N 0.469
Bcin02g06030 Botrytis cinerea Bcin02g06030 N 0.469
MYCTH_2308522 Myceliophthora thermophila MYCTH_2308522 I 0.467
AMSG_09450 Thecamonas trahens AMSG_09450 N 0.462
fgenesh2_pg.scaffold_5000103 Monosiga brevicollis fgenesh2_pg.scaffold_5000103 N 0.458
MBM_07425 Marssonina brunnea MBM_07425 N 0.458
CapteG178344 Capitella teleta CapteG178344 N 0.455
MGG_00866 Magnaporthe oryzae MGG_00866 N 0.450
CAOG_02676 Capsaspora owczarzaki CAOG_02676 N 0.447
UCRNP2_5126 Neofusicoccum parvum UCRNP2_5126 N 0.446
OIDMADRAFT_54116 Oidiodendron maius OIDMADRAFT_54116 N 0.442
CNG00580 Cryptococcus neoformans CNG00580 N 0.438
ENSPMAG00000002918 Petromyzon marinus ENSPMAG00000002918 N 0.436
CGI_10027770 Crassostrea gigas CGI_10027770 N 0.422
OCS_03846 Ophiocordyceps sinensis OCS_03846 N 0.419
estExt_fgenesh1_pg.C_770024 Bigelowiella natans estExt_fgenesh1_pg.C_770024 N 0.416