Lus10027787.g (Linum usitatissimum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Lus10027787.g T334573_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10027787 Sox 56 86
Lus10027787 Sox 82 110

Links

Other Sox family TFs
Other Linum usitatissimum TFs

38 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Lus10016695.g Linum usitatissimum Lus10016695.g N 0.665
Lus10035991.g Linum usitatissimum Lus10035991.g N 0.665
Bra012832 Brassica rapa Bra012832 N 0.660
Lus10013219.g Linum usitatissimum Lus10013219.g N 0.647
Cla010647 Citrullus lanatus Cla010647 N 0.619
MDP0000699531 Malus domestica MDP0000699531 N 0.588
Ca_10726 Cicer arietinum Ca_10726 N 0.586
GLYMA16G22060 Glycine max GLYMA16G22060 I 0.570
OLONG_009629 Oryza longistaminata OLONG_009629 N 0.561
OPUNC09G17310 Oryza punctata OPUNC09G17310 N 0.556
OGLUM09G19410 Oryza glumaepatula OGLUM09G19410 N 0.556
BGIOSGA031227 Oryza indica BGIOSGA031227 N 0.556
OBART09G18880 Oryza barthii OBART09G18880 N 0.556
Pm010381 Prunus mume Pm010381 N 0.546
Bo6g005800 Brassica oleracea Bo6g005800 N 0.523
HelroG178674 Helobdella robusta HelroG178674 N 0.515
PGSC0003DMG400001413 Solanum tuberosum PGSC0003DMG400001413 N 0.506
M407DRAFT_45069 Tulasnella calospora M407DRAFT_45069 N 0.489
JAAARDRAFT_460099 Jaapia argillacea JAAARDRAFT_460099 N 0.488
UCREL1_5722 Eutypa lata UCREL1_5722 N 0.487
BGIBMGA006156 Bombyx mori BGIBMGA006156 N 0.483
PEQ_0000006801 Parascaris equorum PEQ_0000006801 N 0.473
TSTA_110260 Talaromyces stipitatus TSTA_110260 N 0.469
CLEC004367 Cimex lectularius CLEC004367 N 0.460
ASIS002444 Anopheles sinensis ASIS002444 N 0.454
fgenesh1_pg.C_scaffold_10000369 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_10000369 N 0.454
sr12520 Sporisorium reilianum sr12520 N 0.448
EEL_0000370701 Elaeophora elaphi EEL_0000370701 N 0.442
GPLIN_000170600 Globodera pallida GPLIN_000170600 N 0.440
MCOS_0000664501 Mesocestoides corti MCOS_0000664501 N 0.437
TCF7L2 Tursiops truncatus ENSTTRG00000002360 N 0.435
SINV25043 Solenopsis invicta SINV25043 N 0.431
D917_04157 Trichinella nativa D917_04157 N 0.427
SAKL0C03916g Lachancea kluyveri SAKL0C03916g N 0.422
SAKL0D09922g Lachancea kluyveri SAKL0D09922g N 0.422
SAKL0C03872g Lachancea kluyveri SAKL0C03872g N 0.422
TriadG58720 Trichoplax adhaerens TriadG58720 N 0.417
SCHCODRAFT_105718 Schizophyllum commune SCHCODRAFT_105718 N 0.415