GPLIN_000596700 (Globodera pallida)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 GPLIN_000596700 T336340_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Sox102F
M03981_2.00 		Drosophila melanogaster
ATTGTTCGGTGKN
NMCACCGAACAAT		 SELEX
Nitta et al.(2015)
Sox102F_1 		0.474 0.895
Sox102F
M03982_2.00 		Drosophila melanogaster
NAACAATDDCATTGTTN
NAACAATGHHATTGTTN		 SELEX
Nitta et al.(2015)
Sox102F_2 		0.474 0.895
egl-13
M00710_2.00 		Caenorhabditis elegans
NNAACAATWN
NWATTGTTNN		 PBM
Narasimhan et al.(2015)
pTH9125 		0.441 0.912
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GPLIN_000596700 Sox 745 801

Links

Other Sox family TFs
Other Globodera pallida TFs

234 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TRE_0000259001 Trichobilharzia regenti TRE_0000259001 N 0.650
PXEA_0002992801 Protopolystoma xenopodis PXEA_0002992801 N 0.631
csin108932 Clonorchis sinensis csin108932 I 0.629
maker-nMf.1.1.scaf00287-augustus-gene-0.13 Meloidogyne floridensis maker-nMf.1.1.scaf00287-augustus-gene-0.13 I 0.629
T265_14506 Opisthorchis viverrini T265_14506 I 0.629
Sjc_0107520 Schistosoma japonicum Sjc_0107520 N 0.624
PPAI003639 Phlebotomus papatasi PPAI003639 N 0.606
sox13.S Xenopus laevis XB-GENE-865496 I 0.594
LDEC019307 Leptinotarsa decemlineata LDEC019307 N 0.587
sox5.S Xenopus laevis XB-GENE-865667 I 0.587
gw.110.115.1 Branchiostoma floridae gw.110.115.1 N 0.567
ENSSTOG00000011011 Ictidomys tridecemlineatus ENSSTOG00000011011 I 0.566
ACOM029353 Anopheles coluzzii ACOM029353 I 0.561
Myotis_brandtii_SOX2_10019709 Myotis brandtii Myotis_brandtii_SOX2_10019709 I 0.560
ENSPANG00000005859 Papio anubis ENSPANG00000005859 I 0.559
ENSOARG00000000906 Ovis aries ENSOARG00000000906 I 0.559
GPLIN_000970900 Globodera pallida GPLIN_000970900 N 0.558
SOX8 Equus caballus ENSECAG00000016320 I 0.557
AMEC000538 Anopheles melas AMEC000538 I 0.555
Ogr08337 Ophisaurus gracilis Ogr08337 N 0.555
sox-2 Caenorhabditis elegans WBGene00004949 I 0.555
Hba_21281 Heterorhabditis bacteriophora Hba_21281 N 0.555
SMU15030186 Schmidtea mediterranea SMU15030186 N 0.549
ENSP00000322568 Macaca fascicularis ENSP00000322568 I 0.546
ENSLOCG00000011834 Lepisosteus oculatus ENSLOCG00000011834 I 0.541
CFIO01_04514 Colletotrichum fioriniae CFIO01_04514 N 0.524
MESCA012239 Megaselia scalaris MESCA012239 I 0.521
L798_12049 Zootermopsis nevadensis L798_12049 I 0.517
PEX1_064750 Penicillium expansum PEX1_064750 N 0.516
PDIP_33190 Penicillium digitatum PDIP_33190 N 0.516
A1O9_05704 Exophiala aquamarina A1O9_05704 N 0.516
PFICI_02946 Pestalotiopsis fici PFICI_02946 N 0.514
H072_9933 Dactylellina haptotyla H072_9933 N 0.506
DRE_00029 Drechslerella stenobrocha DRE_00029 N 0.506
SPER_0001708101 Spirometra erinaceieuropaei SPER_0001708101 N 0.503
SPER_0001952401 Spirometra erinaceieuropaei SPER_0001952401 N 0.503
GLOINDRAFT_323774 Rhizophagus irregularis GLOINDRAFT_323774 N 0.502
XP_002935940 Xenopus tropicalis XP_002935940 N 0.499
AOL_s00081g337 Arthrobotrys oligospora AOL_s00081g337 N 0.499
CAA46605 Xenopus laevis CAA46605 N 0.498
GPLIN_001405800 Globodera pallida GPLIN_001405800 I 0.497
Brh_R004116 Buceros rhinoceros Brh_R004116 N 0.495
Smp_161600 Schistosoma mansoni Smp_161600 I 0.492
CAA46607 Xenopus laevis CAA46607 N 0.487
MESCA006364 Megaselia scalaris MESCA006364 N 0.486
AMEM018211 Anopheles merus AMEM018211 I 0.485
AMEC013113 Anopheles melas AMEC013113 I 0.485
AATE015566 Anopheles atroparvus AATE015566 I 0.485
CPIJ006395 Culex quinquefasciatus CPIJ006395 I 0.485
ACUA010504 Anopheles culicifacies ACUA010504 I 0.485
ACOM036192 Anopheles coluzzii ACOM036192 I 0.485
AALB006642 Anopheles albimanus AALB006642 I 0.485
AARA001111 Anopheles arabiensis AARA001111 I 0.485
ADIR000972 Anopheles dirus ADIR000972 I 0.485
ADAC001559 Anopheles darlingi ADAC001559 I 0.485
CpipJ_CPIJ006395 Culex pipiens CpipJ_CPIJ006395 I 0.485
AFAF018141 Anopheles farauti AFAF018141 I 0.485
AEPI005799 Anopheles epiroticus AEPI005799 I 0.485
AFUN011571 Anopheles funestus AFUN011571 I 0.485
AMAM016938 Anopheles maculatus AMAM016938 I 0.485
ASIS000135 Anopheles sinensis ASIS000135 I 0.485
AAEL005518 Aedes aegypti AAEL005518 I 0.485
AGAP000066 Anopheles gambiae AGAP000066 I 0.485
AMIN002131 Anopheles minimus AMIN002131 I 0.485
ASTEI06204 Anopheles stephensi ASTEI06204 I 0.485
AQUA008312 Anopheles quadriannulatus AQUA008312 I 0.485
RPRC001038 Rhodnius prolixus RPRC001038 N 0.483
Gfo_R006305 Geospiza fortis Gfo_R006305 I 0.482
TTAC_0001064401 Hydatigera taeniaeformis TTAC_0001064401 N 0.481
XP_002170844.1 Hydra magnipapillata XP_002170844.1 I 0.479
SERLA73DRAFT_139986 Serpula lacrymans SERLA73DRAFT_139986 N 0.476
tetur15g02270 Tetranychus urticae tetur15g02270 I 0.476
L898_g20001 Steinernema monticolum L898_g20001 I 0.474
TCNE_0000724501 Toxocara canis TCNE_0000724501 I 0.474
PXEA_0000763901 Protopolystoma xenopodis PXEA_0000763901 N 0.474
Ppa-egl-13 Pristionchus pacificus PPA18718 I 0.474
ASU_03729 Ascaris suum ASU_03729 I 0.474
GA10800 Drosophila pseudoobscura FBgn0070856 I 0.474
L596_g12387 Steinernema carpocapsae L596_g12387 I 0.474
scaffold4-EXSNAP2012.18 Pristionchus exspectatus scaffold4-EXSNAP2012.18 I 0.474
SMUV_0000354401 Syphacia muris SMUV_0000354401 I 0.474
WBGene00241896 Onchocerca volvulus WBGene00241896 I 0.474
L889_g29948 Steinernema feltiae L889_g29948 I 0.474
Hba_18920 Heterorhabditis bacteriophora Hba_18920 I 0.474
L892_g2830 Steinernema scapterisci L892_g2830 I 0.474
L893_g3677 Steinernema glaseri L893_g3677 I 0.474
LCUP002303 Lucilia cuprina LCUP002303 I 0.474
GL15612 Drosophila persimilis FBgn0153216 I 0.474
GI14086 Drosophila mojavensis FBgn0136840 I 0.474
nAv.1.0.1.g05485 Acanthocheilonema viteae nAv.1.0.1.g05485 I 0.474
nDi.2.2.2.g02312 Dirofilaria immitis nDi.2.2.2.g02312 I 0.474
Sox102F Drosophila melanogaster FBgn0039938 D 0.474
Sox102F Drosophila simulans FBgn0061239 I 0.474
GJ16151 Drosophila virilis FBgn0203336 I 0.474
GK13587 Drosophila willistoni FBgn0215595 I 0.474
GE14503 Drosophila yakuba FBgn0232107 I 0.474
BXY_1610900 Bursaphelenchus xylophilus BXY_1610900 I 0.474
Bm5912 Brugia malayi Bm5912 I 0.474
GG16436 Drosophila erecta FBgn0108667 I 0.474
LOAG_17406 Loa loa LOAG_17406 I 0.474
nOo.2.0.1.g02512 Onchocerca ochengi nOo.2.0.1.g02512 I 0.474
GF20041 Drosophila ananassae FBgn0097048 I 0.474
GM26768 Drosophila sechellia FBgn0181621 I 0.474
nLs.2.1.2.g06545 Litomosoides sigmodontis nLs.2.1.2.g06545 I 0.474
WUBG_01152 Wuchereria bancrofti WUBG_01152 I 0.474
EVEC_0000027701 Enterobius vermicularis EVEC_0000027701 I 0.474
EEL_0000990601 Elaeophora elaphi EEL_0000990601 I 0.474
GH24007 Drosophila grimshawi FBgn0131463 I 0.474
Hsal_00820--XP_001120983.1_APIME Harpegnathos saltator Hsal_00820--XP_001120983.1_APIME I 0.471
SPAL_0001184600 Strongyloides papillosus SPAL_0001184600 I 0.471
SVE_0106200 Strongyloides venezuelensis SVE_0106200 I 0.471
CLEC008310 Cimex lectularius CLEC008310 I 0.471
SSTP_0000859500 Strongyloides stercoralis SSTP_0000859500 I 0.471
LDEC003820 Leptinotarsa decemlineata LDEC003820 I 0.471
MDOA015569 Musca domestica MDOA015569 I 0.471
ACYPI008847 Acyrthosiphon pisum ACYPI008847 I 0.471
RSKR_0000861000 Rhabditophanes kr3021 RSKR_0000861000 I 0.471
KGM_12369 Danaus plexippus KGM_12369 I 0.471
L798_06009 Zootermopsis nevadensis L798_06009 I 0.471
MCINX011158 Melitaea cinxia MCINX011158 I 0.471
ISCW023359 Ixodes scapularis ISCW023359 I 0.471
HMEL008081 Heliconius melpomene HMEL008081 I 0.471
GB41464 Apis mellifera GB41464 I 0.471
BGIBMGA009439 Bombyx mori BGIBMGA009439 I 0.471
ACEP25697 Atta cephalotes ACEP25697 I 0.471
PTRK_0000206000 Parastrongyloides trichosuri PTRK_0000206000 I 0.471
NV17081 Nasonia vitripennis NV17081 I 0.471
PHUM095890 Pediculus humanus PHUM095890 I 0.471
SINV24752 Solenopsis invicta SINV24752 I 0.471
SMAR012049 Strigamia maritima SMAR012049 I 0.471
TC007419 Tribolium castaneum TC007419 I 0.471
YQE_00723 Dendroctonus ponderosae YQE_00723 I 0.471
Cflo_00400--XP_392414.3_APIME Camponotus floridanus Cflo_00400--XP_392414.3_APIME I 0.471
YQE_01092 Dendroctonus ponderosae YQE_01092 I 0.471
e_gw.60.194.1 Branchiostoma floridae e_gw.60.194.1 N 0.469
genemark-nMf.1.1.scaf07188-processed-gene-0.1 Meloidogyne floridensis genemark-nMf.1.1.scaf07188-processed-gene-0.1 I 0.469
MhA1_Contig651.frz3.gene5 Meloidogyne hapla MhA1_Contig651.frz3.gene5 I 0.469
DAPPUDRAFT_37711 Daphnia pulex DAPPUDRAFT_37711 I 0.465
DAPPUDRAFT_37708 Daphnia pulex DAPPUDRAFT_37708 I 0.465
SMU15026888 Schmidtea mediterranea SMU15026888 I 0.465
SMU15030824 Schmidtea mediterranea SMU15030824 I 0.464
D915_05142 Fasciola hepatica D915_05142 I 0.459
MESCA006188 Megaselia scalaris MESCA006188 N 0.457
ENSAMXG00000003325 Astyanax mexicanus ENSAMXG00000003325 N 0.455
D917_00796 Trichinella nativa D917_00796 I 0.455
EFV58022 Trichinella spiralis EFV58022 I 0.455
TMUE_s0212000700 Trichuris muris TMUE_s0212000700 I 0.452
PSEUBRA_SCAF2g02551 Pseudozyma brasiliensis PSEUBRA_SCAF2g02551 N 0.446
ENSOANG00000002448 Ornithorhynchus anatinus ENSOANG00000002448 I 0.444
HelroG148116 Helobdella robusta HelroG148116 I 0.443
CapteG26259 Capitella teleta CapteG26259 I 0.443
SSLN_0001520501 Schistocephalus solidus SSLN_0001520501 I 0.443
LotgiG121785 Lottia gigantea LotgiG121785 I 0.443
BGLB012549 Biomphalaria glabrata BGLB012549 I 0.443
MCOS_0000348501 Mesocestoides corti MCOS_0000348501 I 0.443
EmuJ_001032300 Echinococcus multilocularis EmuJ_001032300 I 0.443
DILT_0000681301 Diphyllobothrium latum DILT_0000681301 I 0.443
Ocbimv22009939m.g Octopus bimaculoides Ocbimv22009939m.g I 0.443
TTAC_0000923101 Hydatigera taeniaeformis TTAC_0000923101 I 0.443
TsM_000058700 Taenia solium TsM_000058700 I 0.443
SOX13 Monodelphis domestica ENSMODG00000001192 I 0.442
ENSMEUG00000005847 Macropus eugenii ENSMEUG00000005847 I 0.442
ENSSHAG00000007118 Sarcophilus harrisii ENSSHAG00000007118 I 0.442
TELCIR_02788 Teladorsagia circumcincta TELCIR_02788 I 0.442
SVUK_0000998801 Strongylus vulgaris SVUK_0000998801 I 0.441
NBR_0001044001 Nippostrongylus brasiliensis NBR_0001044001 I 0.441
HCOI00297300 Haemonchus contortus HCOI00297300 I 0.441
HPBE_0001165001 Heligmosomoides bakeri HPBE_0001165001 I 0.441
HPLM_0001192001 Haemonchus placei HPLM_0001192001 I 0.441
DICVIV_11520 Dictyocaulus viviparus DICVIV_11520 I 0.441
NECAME_00028 Necator americanus NECAME_00028 I 0.441
CJA05617 Caenorhabditis japonica CJA05617 I 0.441
ANCDUO_07682 Ancylostoma duodenale ANCDUO_07682 I 0.441
CBN13341 Caenorhabditis brenneri CBN13341 I 0.441
HMEL002398 Heliconius melpomene HMEL002398 I 0.441
HMEL006651 Heliconius melpomene HMEL006651 I 0.441
egl-13 Caenorhabditis elegans WBGene00001182 D 0.441
CRE00702 Caenorhabditis remanei CRE00702 I 0.441
YQE_08562 Dendroctonus ponderosae YQE_08562 N 0.441
CBG14721 Caenorhabditis briggsae CBG14721 I 0.441
ACOC_0000879101 Angiostrongylus costaricensis ACOC_0000879101 I 0.441
SOX2 Felis catus ENSFCAG00000029205 I 0.441
ANCCAN_02894 Ancylostoma caninum ANCCAN_02894 I 0.441
ANCCEY_00303 Ancylostoma ceylanicum ANCCEY_00303 I 0.441
SOX2 Procavia capensis ENSPCAG00000003690 I 0.441
GYMLUDRAFT_143012 Gymnopus luxurians GYMLUDRAFT_143012 N 0.438
nAv.1.0.1.g07335 Acanthocheilonema viteae nAv.1.0.1.g07335 N 0.438
nRc.2.0.1.g07393 Romanomermis culicivorax nRc.2.0.1.g07393 I 0.438
CGI_10012168 Crassostrea gigas CGI_10012168 I 0.436
AMEM007694 Anopheles merus AMEM007694 N 0.435
MCOS_0000919201 Mesocestoides corti MCOS_0000919201 N 0.433
Afo_R012670 Aptenodytes forsteri Afo_R012670 N 0.432
UCREL1_469 Eutypa lata UCREL1_469 N 0.431
D915_11240 Fasciola hepatica D915_11240 N 0.427
HmN_000663000 Hymenolepis microstoma HmN_000663000 I 0.425
HNAJ_0001021801 Hymenolepis nana HNAJ_0001021801 I 0.425
sox9a Tetraodon nigroviridis ENSTNIG00000001901 N 0.425
HDID_0001073701 Hymenolepis diminuta HDID_0001073701 I 0.425
PPA25894 Pristionchus pacificus PPA25894 I 0.423
RPRC013413 Rhodnius prolixus RPRC013413 N 0.423
GLOINDRAFT_83691 Rhizophagus irregularis GLOINDRAFT_83691 N 0.423
A_07238 Schistosoma haematobium A_07238 N 0.421
D915_01276 Fasciola hepatica D915_01276 N 0.421
SOX12 Dasypus novemcinctus ENSDNOG00000044763 N 0.419
HelroG153157 Helobdella robusta HelroG153157 I 0.418
SOX13 Bos taurus ENSBTAG00000008132 I 0.416
SOX17 Canis familiaris ENSCAFG00000025327 I 0.416
sox13 Gasterosteus aculeatus ENSGACG00000010931 I 0.416
ENSGMOG00000004316 Gadus morhua ENSGMOG00000004316 I 0.416
ENSLACG00000008711 Latimeria chalumnae ENSLACG00000008711 I 0.416
SOX13 Cavia porcellus ENSCPOG00000006604 I 0.416
SOX13 Dasypus novemcinctus ENSDNOG00000031131 I 0.416
ENSECAG00000006516 Equus caballus ENSECAG00000006516 I 0.416
Sox5 Dipodomys ordii ENSDORG00000003684 I 0.416
SOX13 Anolis carolinensis ENSACAG00000010028 I 0.416
ENSFALG00000000469 Ficedula albicollis ENSFALG00000000469 I 0.416
ENSLOCG00000000321 Lepisosteus oculatus ENSLOCG00000000321 I 0.416
sox13 Danio rerio ENSDARG00000030297 I 0.416
ENSPFOG00000004787 Poecilia formosa ENSPFOG00000004787 I 0.416
Pvit_06428 Pogona vitticeps Pvit_06428 I 0.416
sox13 Xenopus tropicalis XB-GENE-481889 I 0.416
Pvit_06069 Pogona vitticeps Pvit_06069 I 0.416
Ogr06849 Ophisaurus gracilis Ogr06849 I 0.416
ENSP00000356174-D1 Bos grunniens ENSP00000356174-D1 I 0.416
Gfo_R014696 Geospiza fortis Gfo_R014696 I 0.416
ENSOARG00000002079 Ovis aries ENSOARG00000002079 I 0.416
ENSXMAG00000008855 Xiphophorus maculatus ENSXMAG00000008855 I 0.416
ENSONIG00000020233 Oreochromis niloticus ENSONIG00000020233 I 0.416
SOX13 Oryctolagus cuniculus ENSOCUG00000023464 I 0.416
sox13 Takifugu rubripes ENSTRUG00000000156 I 0.416
sox13 Oryzias latipes ENSORLG00000012066 I 0.416
sox13 Tetraodon nigroviridis ENSTNIG00000007374 I 0.416
SMTD_0000090701 Schistosoma mattheei SMTD_0000090701 N 0.415
fgenesh1_pg.C_scaffold_11000031 Sporobolomyces roseus fgenesh1_pg.C_scaffold_11000031 N 0.415