CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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tbx16
(
Gasterosteus aculeatus
)
T-box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00907 (T-box)
IPR001699
ENSGACG00000012454
T339911_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
estExt_fgenesh2_pg.C_1570024
M01030_2.00
Branchiostoma floridae
NHNDCACNHN
NDNGTGHNDN
PBM
SebePedros et al.(2013)
pTH9244
0.751
0.674
Tbx5
M00833_2.00
Mus musculus
AGGTGTBA
TVACACCT
PBM
Weirauch et al.(2013)
pTH3775
0.744
0.608
TBX5
M03552_2.00
Homo sapiens
AGGTGTBA
TVACACCT
SELEX
Jolma et al.(2013)
TBX5_1
0.744
0.608
TBX5
M03553_2.00
Homo sapiens
AGGTGTKANWWNTVACACCT
AGGTGTBANWWNTMACACCT
SELEX
Jolma et al.(2013)
TBX5_2
0.744
0.608
Tbx5
M09649_2.00
Mus musculus
AGGTGHBA
TVDCACCT
Misc
Heinz et al.(2010)
HL1-Tbx5.biotin_GSE21529
0.744
0.608
TBX5
M11374_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX5_01
0.744
0.608
TBX5
M11375_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX5_02
0.744
0.608
Tbx5
M11387_2.00
Mus musculus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX5_05
0.744
0.608
TBX5
M11376_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX5_Q2
0.744
0.608
TBX5
M11377_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TBX5_Q5
0.744
0.608
XP_001195863
M02498_2.00
Strongylocentrotus purpuratus
AGGTGTBA
TVACACCT
PBM
Weirauch et al.(2014)
pTH9340
0.738
0.685
For this family, TFs with SR scores >
0.734
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGACP00000016474
T-box
33
213
LTLEDPELWKTFCEIGTEMIITKPGRRMFPHCKINLSGLIPCAKYILLVDMVPEDGFRYKWNKEKWEVAGKAEPQPPCRTYLHPESPAPGSHWMKQSISFLKLKLTNNTLDQHGHIILHSMHRYHPRFHIVQADDLFSVRWSVFQTFTFPETSFTAVTAYQNTKITKLKIDHNPFAKGFRD
Links
Other
T-box
family TFs
Other
Gasterosteus aculeatus
TFs
105 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ENSONIG00000011030
Oreochromis niloticus
ENSONIG00000011030
I
0.878
tbx16
Danio rerio
ENSDARG00000007329
I
0.873
ENSPFOG00000017869
Poecilia formosa
ENSPFOG00000017869
I
0.870
ENSXMAG00000008530
Xiphophorus maculatus
ENSXMAG00000008530
I
0.869
ENSAMXG00000001195
Astyanax mexicanus
ENSAMXG00000001195
I
0.865
tbx16
Oryzias latipes
ENSORLG00000014344
I
0.861
ENSLOCG00000006550
Lepisosteus oculatus
ENSLOCG00000006550
I
0.836
tbx16
Tetraodon nigroviridis
ENSTNIG00000011487
N
0.830
tbx16
Takifugu rubripes
ENSTRUG00000016468
I
0.829
ENSLACG00000012884
Latimeria chalumnae
ENSLACG00000012884
I
0.796
BAH04511
Xenopus tropicalis
BAH04511
I
0.782
vegt.S
Xenopus laevis
XB-GENE-1033836
N
0.782
vegt
Xenopus tropicalis
XB-GENE-1033829
I
0.782
BAH04512
Xenopus tropicalis
BAH04512
I
0.782
vegt.L
Xenopus laevis
XB-GENE-6252142
N
0.766
Alligator_sinensis_CCG014169.1
Alligator sinensis
Alligator_sinensis_CCG014169.1
N
0.759
TBX6
Gallus gallus
ENSGALG00000006374
I
0.758
TBX6
Taeniopygia guttata
ENSTGUG00000010188
I
0.758
ENSFALG00000007252
Ficedula albicollis
ENSFALG00000007252
I
0.758
Aan_R008261
Calypte anna
Aan_R008261
I
0.758
ENSAPLG00000006398
Anas platyrhynchos
ENSAPLG00000006398
I
0.758
Gfo_R008747
Geospiza fortis
Gfo_R008747
I
0.758
Tal_R011807
Tyto alba
Tal_R011807
I
0.758
Brh_R011905
Buceros rhinoceros
Brh_R011905
I
0.758
Afo_R009018
Aptenodytes forsteri
Afo_R009018
I
0.758
TBX6
Meleagris gallopavo
ENSMGAG00000007663
I
0.758
estExt_fgenesh2_pg.C_1570035
Branchiostoma floridae
estExt_fgenesh2_pg.C_1570035
I
0.751
estExt_fgenesh2_pg.C_1570024
Branchiostoma floridae
estExt_fgenesh2_pg.C_1570024
D
0.751
ENSONIG00000003732
Oreochromis niloticus
ENSONIG00000003732
I
0.751
ENSONIG00000013614
Oreochromis niloticus
ENSONIG00000013614
I
0.749
tbx5
Oryzias latipes
ENSORLG00000008185
I
0.749
ENSPFOG00000016001
Poecilia formosa
ENSPFOG00000016001
I
0.749
Cmyd_10005826
Chelonia mydas
Cmyd_10005826
I
0.748
TBX3
Monodelphis domestica
ENSMODG00000012059
I
0.747
LotgiG117236
Lottia gigantea
LotgiG117236
I
0.745
tbx5a
Takifugu rubripes
ENSTRUG00000015054
I
0.744
Ogr05323
Ophisaurus gracilis
Ogr05323
I
0.744
Myotis_brandtii_TBX5_10028219
Myotis brandtii
Myotis_brandtii_TBX5_10028219
I
0.744
tbx5a
Tetraodon nigroviridis
ENSTNIG00000009036
I
0.744
tbx5a
Gasterosteus aculeatus
ENSGACG00000016787
I
0.744
TBX5
Pan troglodytes
ENSPTRG00000005496
I
0.744
Tbx5
Rattus norvegicus
ENSRNOG00000001399
I
0.744
TBX5
Sus scrofa
ENSSSCG00000009867
I
0.744
TBX5
Tursiops truncatus
ENSTTRG00000000980
I
0.744
ENSCSAG00000002347
Chlorocebus sabaeus
ENSCSAG00000002347
I
0.744
TBX5
Homo sapiens
ENSG00000089225
D
0.744
ENSFALG00000007778
Ficedula albicollis
ENSFALG00000007778
I
0.744
Alligator_sinensis_CCG008096.1
Alligator sinensis
Alligator_sinensis_CCG008096.1
I
0.744
TBX5
Equus caballus
ENSECAG00000017114
I
0.744
TBX5
Dasypus novemcinctus
ENSDNOG00000025303
I
0.744
TBX5
Felis catus
ENSFCAG00000005574
I
0.744
ENSBTAP00000015125-D1
Bos grunniens
ENSBTAP00000015125-D1
I
0.744
tbx5a
Danio rerio
ENSDARG00000024894
I
0.744
Cmyd_10018097
Chelonia mydas
Cmyd_10018097
I
0.744
ENSP00000384152
Macaca fascicularis
ENSP00000384152
I
0.744
ENSXMAG00000005348
Xiphophorus maculatus
ENSXMAG00000005348
I
0.744
TBX5
Cavia porcellus
ENSCPOG00000014558
I
0.744
TBX5
Otolemur garnettii
ENSOGAG00000016204
I
0.744
TBX5
Oryctolagus cuniculus
ENSOCUG00000012715
I
0.744
TBX5
Loxodonta africana
ENSLAFG00000010125
I
0.744
ENSLACG00000002339
Latimeria chalumnae
ENSLACG00000002339
I
0.744
ENSGMOG00000011740
Gadus morhua
ENSGMOG00000011740
I
0.744
ENSOARG00000006614
Ovis aries
ENSOARG00000006614
I
0.744
Tbx5
Mus musculus
ENSMUSG00000018263
D
0.744
TBX5
Meleagris gallopavo
ENSMGAG00000010075
I
0.744
TBX5
Myotis lucifugus
ENSMLUG00000016530
I
0.744
TBX5
Macaca mulatta
ENSMMUG00000016202
I
0.744
ENSMPUG00000002715
Mustela putorius furo
ENSMPUG00000002715
I
0.744
ENSPPYG00000004994
Pongo abelii
ENSPPYG00000004994
I
0.744
TBX5
Bos taurus
ENSBTAG00000011384
I
0.744
ENSAMEG00000001112
Ailuropoda melanoleuca
ENSAMEG00000001112
I
0.744
TBX5
Gallus gallus
ENSGALG00000008253
I
0.744
ENSPFOG00000019824
Poecilia formosa
ENSPFOG00000019824
I
0.744
TBX5
Callithrix jacchus
ENSCJAG00000009744
I
0.744
tbx5a
Oryzias latipes
ENSORLG00000007339
I
0.744
ENSPANG00000016891
Papio anubis
ENSPANG00000016891
I
0.744
TBX5
Gorilla gorilla
ENSGGOG00000013775
I
0.744
TBX5
Canis familiaris
ENSCAFG00000009189
I
0.744
Pvit_03730
Pogona vitticeps
Pvit_03730
I
0.742
TBX2
Taeniopygia guttata
ENSTGUG00000007813
I
0.741
tbx2.S
Xenopus laevis
XB-GENE-6255176
I
0.740
tbx3a
Danio rerio
ENSDARG00000002216
I
0.740
ENSAMXG00000009197
Astyanax mexicanus
ENSAMXG00000009197
I
0.740
tbx3a
Takifugu rubripes
ENSTRUG00000015097
I
0.740
tbx3a
Gasterosteus aculeatus
ENSGACG00000016783
I
0.740
tbx3a
Tetraodon nigroviridis
ENSTNIG00000009035
I
0.740
ENSONIG00000000187
Oreochromis niloticus
ENSONIG00000000187
I
0.740
tbx3a
Oryzias latipes
ENSORLG00000007316
I
0.740
tbx5b
Gasterosteus aculeatus
ENSGACG00000009550
I
0.740
ENSXMAG00000005372
Xiphophorus maculatus
ENSXMAG00000005372
I
0.740
ENSPFOG00000024759
Poecilia formosa
ENSPFOG00000024759
I
0.740
ENSGMOG00000011728
Gadus morhua
ENSGMOG00000011728
I
0.740
ML45844a
Mnemiopsis leidyi
ML45844a
I
0.740
tbx5b
Tetraodon nigroviridis
ENSTNIG00000015908
I
0.739
tbx2.L
Xenopus laevis
XB-GENE-1018122
I
0.739
TBX5
Monodelphis domestica
ENSMODG00000012045
I
0.738
XP_001195863
Strongylocentrotus purpuratus
XP_001195863
D
0.738
Gfo_R010838
Geospiza fortis
Gfo_R010838
I
0.737
ENSPSIG00000017594
Pelodiscus sinensis
ENSPSIG00000017594
I
0.736
Cmyd_10016208
Chelonia mydas
Cmyd_10016208
I
0.736
tbx5.L
Xenopus laevis
XB-GENE-865653
I
0.735
ENSLOCG00000007616
Lepisosteus oculatus
ENSLOCG00000007616
I
0.735
tbx5
Xenopus tropicalis
XB-GENE-486855
I
0.735
Sakowv30012255m.g
Saccoglossus kowalevskii
Sakowv30012255m.g
I
0.735
ENSAMXG00000009196
Astyanax mexicanus
ENSAMXG00000009196
I
0.735