Bra026082 (Brassica rapa)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 Bra026082 T001169_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PLT1
M06622_2.00 		Arabidopsis thaliana
DDCACGNWWHYCRAGRHNN
NNDYCTYGRDWWNCGTGHH		 Dap-seq
OMalley et al.(2016)
PLT1_col_a 		0.700 0.736
PLT1
M06623_2.00 		Arabidopsis thaliana
DYDCRNWTYYCRAG
CTYGRRAWNYGHRH		 Dap-seq
OMalley et al.(2016)
PLT1_colamp_a 		0.700 0.736
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra026082.1-P AP2 47 107
Bra026082.1-P AP2 149 201

Links

Other AP2 family TFs
Other Brassica rapa TFs

367 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BHLH104 Arabidopsis thaliana AT4G14410 D
Bo1g102270 Brassica oleracea Bo1g102270 I
Bo4g126940 Brassica oleracea Bo4g126940 I
Bo7g040830 Brassica oleracea Bo7g040830 I
Bostr.0597s0053 Boechera stricta Bostr.0597s0053 I
Bra014923 Brassica rapa Bra014923 I
Bra041033 Brassica rapa Bra041033 I
Cagra.1718s0002 Capsella grandiflora Cagra.1718s0002 I
Carubv10005335m.g Capsella rubella Carubv10005335m.g I
cassava35418.valid.m1 Manihot esculenta cassava35418.valid.m1 N
Ca_23174 Cicer arietinum Ca_23174 I
Cucsa.255290 Cucumis sativus Cucsa.255290 I
Eucgr.H00174 Eucalyptus grandis Eucgr.H00174 N
evm.TU.supercontig_44.78 Carica papaya evm.TU.supercontig_44.78 I
bHLH104 Arabidopsis lyrata fgenesh2_kg.7__2895__AT4G14410.2 I
gene11436-v1.0-hybrid Fragaria vesca gene11436-v1.0-hybrid I
Lus10021199.g Linum usitatissimum Lus10021199.g N
Lus10021876.g Linum usitatissimum Lus10021876.g N
Lus10022186.g Linum usitatissimum Lus10022186.g I
Lus10041148.g Linum usitatissimum Lus10041148.g N
MTR_1g043430 Medicago truncatula MTR_1g043430 I
POPTR_0008s16560 Populus trichocarpa POPTR_0008s16560 N
POPTR_0010s08360 Populus trichocarpa POPTR_0010s08360 N
SapurV1A.0007s0940 Salix purpurea SapurV1A.0007s0940 N
SapurV1A.0292s0060 Salix purpurea SapurV1A.0292s0060 N
Thhalv10025927m.g Eutrema salsugineum Thhalv10025927m.g I