Carubv10010179m.g (Capsella rubella)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Carubv10010179m.g T007849_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF012
M06570_2.00 		Arabidopsis thaliana
NHNNHNHHDHHDCCACCGHC
GDCGGTGGHDDHDDNDNNDN		 Dap-seq
OMalley et al.(2016)
DREB26_col_a 		0.799 1.000
ERF014
M06581_2.00 		Arabidopsis thaliana
YCDYCDCCACCGHCD
HGDCGGTGGHGRHGR		 Dap-seq
OMalley et al.(2016)
AT1G44830_col_a 		0.782 0.960
ERF013
M06601_2.00 		Arabidopsis thaliana
DYCACCGHCAHHDNHNNNNNN
NNNNNNDNHDDTGDCGGTGRH		 Dap-seq
OMalley et al.(2016)
At1g77640_col_a 		0.763 0.960
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10010179m AP2 45 96

Links

Other AP2 family TFs
Other Capsella rubella TFs

126 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29908.m006165 Ricinus communis 29908.m006165 I 0.782
Aquca_014_00181 Aquilegia coerulea Aquca_014_00181 I 0.781
ERF012 Arabidopsis thaliana AT1G21910 D 0.799
ERF014 Arabidopsis thaliana AT1G44830 D 0.782
ERF013 Arabidopsis thaliana AT1G77640 D 0.763
BGIOSGA005542 Oryza indica BGIOSGA005542 I 0.768
BGIOSGA011061 Oryza indica BGIOSGA011061 I 0.690
BGIOSGA022531 Oryza indica BGIOSGA022531 I 0.711
Bo5g034880 Brassica oleracea Bo5g034880 I 0.797
Bo6g004620 Brassica oleracea Bo6g004620 I 0.782
Bo6g121400 Brassica oleracea Bo6g121400 I 0.790
Bo7g059990 Brassica oleracea Bo7g059990 I 0.747
Bo8g071150 Brassica oleracea Bo8g071150 I 0.789
Bostr.12302s0095 Boechera stricta Bostr.12302s0095 I 0.782
Bostr.12659s0041 Boechera stricta Bostr.12659s0041 I 0.799
Bostr.20129s0200 Boechera stricta Bostr.20129s0200 I 0.763
Bra012298 Brassica rapa Bra012298 I 0.780
Bra015660 Brassica rapa Bra015660 I 0.790
Bra016400 Brassica rapa Bra016400 I 0.789
Bra036022 Brassica rapa Bra036022 I 0.799
Bra040309 Brassica rapa Bra040309 I 0.782
BRADI1G46120 Brachypodium distachyon BRADI1G46120 I 0.761
BRADI1G67350 Brachypodium distachyon BRADI1G67350 I 0.696
BRADI3G57867 Brachypodium distachyon BRADI3G57867 I 0.768
Cagra.0096s0069 Capsella grandiflora Cagra.0096s0069 I 0.751
Cagra.1192s0001 Capsella grandiflora Cagra.1192s0001 I 0.782
Cagra.2306s0038 Capsella grandiflora Cagra.2306s0038 I 0.799
Carubv10010259m.g Capsella rubella Carubv10010259m.g I 0.782
Carubv10020777m.g Capsella rubella Carubv10020777m.g I 0.751
cassava28944.valid.m1 Manihot esculenta cassava28944.valid.m1 I 0.782
cassava44357.m1 Manihot esculenta cassava44357.m1 I 0.772
Ca_25824 Cicer arietinum Ca_25824 I 0.782
chr1.LjB21G05.120.nc Lotus japonicus chr1.LjB21G05.120.nc I 0.744
Ciclev10002294m.g Citrus clementina Ciclev10002294m.g I 0.776
Cla014165 Citrullus lanatus Cla014165 I 0.782
Cla023512 Citrullus lanatus Cla023512 I 0.782
Cucsa.365220 Cucumis sativus Cucsa.365220 I 0.782
Cucsa.372760 Cucumis sativus Cucsa.372760 I 0.782
Eucgr.F03772 Eucalyptus grandis Eucgr.F03772 I 0.725
evm.TU.supercontig_36.41 Carica papaya evm.TU.supercontig_36.41 I 0.782
F775_17148 Aegilops tauschii F775_17148 I 0.768
F775_20580 Aegilops tauschii F775_20580 I 0.760
DREB26 Arabidopsis lyrata fgenesh2_kg.1__2381__AT1G21910.1 I 0.799
fgenesh2_kg.1__3777__AT1G44830.1 Arabidopsis lyrata fgenesh2_kg.1__3777__AT1G44830.1 I 0.782
fgenesh2_kg.2__2058__AT1G77640.1 Arabidopsis lyrata fgenesh2_kg.2__2058__AT1G77640.1 I 0.763
gene11145-v1.0-hybrid Fragaria vesca gene11145-v1.0-hybrid I 0.782
GLYMA04G43040 Glycine max GLYMA04G43040 I 0.782
GLYMA06G11700 Glycine max GLYMA06G11700 I 0.782
GLYMA13G02860 Glycine max GLYMA13G02860 I 0.782
GLYMA14G22970 Glycine max GLYMA14G22970 I 0.782
Gorai.002G220900 Gossypium raimondii Gorai.002G220900 I 0.782
Gorai.009G244500 Gossypium raimondii Gorai.009G244500 I 0.782
Gorai.010G048900 Gossypium raimondii Gorai.010G048900 I 0.782
GRMZM2G007406 Zea mays GRMZM2G007406 I 0.732
GRMZM2G011110 Zea mays GRMZM2G011110 I 0.768
GRMZM2G015281 Zea mays GRMZM2G015281 I 0.740
GRMZM2G021369 Zea mays GRMZM2G021369 I 0.718
GRMZM2G084264 Zea mays GRMZM2G084264 I 0.721
GSMUA_Achr10G25270_001 Musa acuminata GSMUA_Achr10G25270_001 I 0.759
GSMUA_Achr10G30100_001 Musa acuminata GSMUA_Achr10G30100_001 I 0.760
GSMUA_Achr8G23240_001 Musa acuminata GSMUA_Achr8G23240_001 I 0.770
LjSGA_147935.1 Lotus japonicus LjSGA_147935.1 I 0.713
LjT35E05.90.nd Lotus japonicus LjT35E05.90.nd I 0.744
LPERR02G27720 Leersia perrieri LPERR02G27720 I 0.762
LPERR03G10190 Leersia perrieri LPERR03G10190 I 0.690
LPERR06G06370 Leersia perrieri LPERR06G06370 I 0.768
Lus10003740.g Linum usitatissimum Lus10003740.g I 0.782
Lus10028032.g Linum usitatissimum Lus10028032.g I 0.782
MDP0000120147 Malus domestica MDP0000120147 I 0.782
MDP0000319736 Malus domestica MDP0000319736 I 0.754
MDP0000923690 Malus domestica MDP0000923690 I 0.782
mgf021045m Mimulus guttatus mgf021045m I 0.782
mgf023290m Mimulus guttatus mgf023290m I 0.766
MLOC_70931 Hordeum vulgare MLOC_70931 I 0.759
MTR_3g072610 Medicago truncatula MTR_3g072610 I 0.782
MTR_5g058470 Medicago truncatula MTR_5g058470 I 0.782
OB03G21640 Oryza brachyantha OB03G21640 I 0.692
OBART03G11470 Oryza barthii OBART03G11470 I 0.690
OBART06G07000 Oryza barthii OBART06G07000 I 0.711
OGLUM02G34320 Oryza glumaepatula OGLUM02G34320 I 0.768
OGLUM03G11430 Oryza glumaepatula OGLUM03G11430 I 0.690
OGLUM06G07380 Oryza glumaepatula OGLUM06G07380 I 0.711
OMERI02G32260 Oryza meridionalis OMERI02G32260 I 0.768
OMERI03G10750 Oryza meridionalis OMERI03G10750 I 0.690
OMERI06G08130 Oryza meridionalis OMERI06G08130 I 0.711
ONIVA02G33600 Oryza nivara ONIVA02G33600 I 0.768
ONIVA03G12660 Oryza nivara ONIVA03G12660 I 0.690
ONIVA06G08290 Oryza nivara ONIVA06G08290 I 0.711
OPUNC02G31280 Oryza punctata OPUNC02G31280 I 0.768
OPUNC03G11030 Oryza punctata OPUNC03G11030 I 0.690
OPUNC06G06600 Oryza punctata OPUNC06G06600 I 0.711
orange1.1g039680m.g Citrus sinensis orange1.1g039680m.g I 0.776
ORGLA03G0110800 Oryza glaberrima ORGLA03G0110800 I 0.690
ORGLA06G0065100 Oryza glaberrima ORGLA06G0065100 I 0.711
ORUFI03G11820 Oryza rufipogon ORUFI03G11820 I 0.690
OS02G0767800 Oryza sativa OS02G0767800 I 0.768
OS03G0263000 Oryza sativa OS03G0263000 I 0.690
Pavir.Ia03856 Panicum virgatum Pavir.Ia03856 I 0.740
Pavir.Ib01111 Panicum virgatum Pavir.Ib01111 I 0.740
Pavir.J02555 Panicum virgatum Pavir.J02555 I 0.768
Pavir.J23882 Panicum virgatum Pavir.J23882 I 0.760
Pavir.J26231 Panicum virgatum Pavir.J26231 I 0.760
Pavir.J30447 Panicum virgatum Pavir.J30447 I 0.709
PGSC0003DMG400000910 Solanum tuberosum PGSC0003DMG400000910 I 0.789
PK16069.1 Cannabis sativa PK16069.1 I 0.746
Pm004870 Prunus mume Pm004870 I 0.782
POPTR_0002s08610 Populus trichocarpa POPTR_0002s08610 I 0.782
POPTR_0005s15830 Populus trichocarpa POPTR_0005s15830 I 0.768
PRUPE_ppa010649mg Prunus persica PRUPE_ppa010649mg I 0.782
SapurV1A.0010s0960 Salix purpurea SapurV1A.0010s0960 I 0.782
SapurV1A.0105s0160 Salix purpurea SapurV1A.0105s0160 I 0.769
SapurV1A.3198s0010 Salix purpurea SapurV1A.3198s0010 I 0.769
Sb01g040280 Sorghum bicolor Sb01g040280 I 0.740
Sb04g034290 Sorghum bicolor Sb04g034290 I 0.768
Sb10g006980 Sorghum bicolor Sb10g006980 I 0.754
Si007977m.g Setaria italica Si007977m.g I 0.760
Si039170m.g Setaria italica Si039170m.g I 0.740
Solyc11g012980.1 Solanum lycopersicum Solyc11g012980.1 I 0.789
TCM_035077 Theobroma cacao TCM_035077 I 0.782
Thhalv10008639m.g Eutrema salsugineum Thhalv10008639m.g I 0.799
Thhalv10011778m.g Eutrema salsugineum Thhalv10011778m.g I 0.782
Thhalv10019045m.g Eutrema salsugineum Thhalv10019045m.g I 0.790
Traes_4AS_18663793B Triticum aestivum Traes_4AS_18663793B I 0.696
Traes_4BL_762F09E09 Triticum aestivum Traes_4BL_762F09E09 I 0.696
Traes_4DL_FB8B5AAEB Triticum aestivum Traes_4DL_FB8B5AAEB I 0.696
VIT_18s0001g03240 Vitis vinifera VIT_18s0001g03240 I 0.782