Pavir.J19507 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.J19507 T009588_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J19507.1.p AP2 88 148
Pavir.J19507.1.p AP2 190 242

Links

Other AP2 family TFs
Other Panicum virgatum TFs

293 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29822.m003477 Ricinus communis 29822.m003477 N 0.829
30069.m000440 Ricinus communis 30069.m000440 N 0.807
30114.m000507 Ricinus communis 30114.m000507 N 0.807
AMTR_s00019p00086450 Amborella trichopoda AMTR_s00019p00086450 I 0.843
AMTR_s00101p00022740 Amborella trichopoda AMTR_s00101p00022740 N 0.824
AMTR_s00202p00017170 Amborella trichopoda AMTR_s00202p00017170 N 0.822
Aquca_002_00506 Aquilegia coerulea Aquca_002_00506 I 0.837
Aquca_016_00348 Aquilegia coerulea Aquca_016_00348 I 0.857
Aquca_048_00034 Aquilegia coerulea Aquca_048_00034 I 0.840
Aquca_074_00065 Aquilegia coerulea Aquca_074_00065 I 0.873
ADAP Arabidopsis thaliana AT1G16060 I 0.850
AT1G79700 Arabidopsis thaliana AT1G79700 I 0.858
WRI1 Arabidopsis thaliana AT3G54320 I 0.841
BGIOSGA016726 Oryza indica BGIOSGA016726 I 0.682
BGIOSGA017664 Oryza indica BGIOSGA017664 I 0.848
BGIOSGA021927 Oryza indica BGIOSGA021927 N 0.933
BGIOSGA028751 Oryza indica BGIOSGA028751 I 0.839
BGIOSGA030783 Oryza indica BGIOSGA030783 I 0.851
BGIOSGA034580 Oryza indica BGIOSGA034580 N 0.767
BGIOSGA036704 Oryza indica BGIOSGA036704 N 0.767
Bo5g021520 Brassica oleracea Bo5g021520 N 0.825
Bo6g067950 Brassica oleracea Bo6g067950 I 0.842
Bo6g124080 Brassica oleracea Bo6g124080 N 0.832
Bo8g083590 Brassica oleracea Bo8g083590 I 0.841
Bostr.0697s0045 Boechera stricta Bostr.0697s0045 I 0.841
Bostr.20129s0410 Boechera stricta Bostr.20129s0410 I 0.860
Bostr.7128s0222 Boechera stricta Bostr.7128s0222 N 0.823
Bra003178 Brassica rapa Bra003178 N 0.808
Bra007066 Brassica rapa Bra007066 N 0.807
Bra026082 Brassica rapa Bra026082 I 0.852
Bra035137 Brassica rapa Bra035137 I 0.865
BRADI2G18570 Brachypodium distachyon BRADI2G18570 I 0.877
BRADI2G48130 Brachypodium distachyon BRADI2G48130 N 0.913
BRADI3G36820 Brachypodium distachyon BRADI3G36820 N 0.754
BRADI4G30617 Brachypodium distachyon BRADI4G30617 I 0.856
BRADI4G43877 Brachypodium distachyon BRADI4G43877 I 0.798
Cagra.0562s0024 Capsella grandiflora Cagra.0562s0024 I 0.841
Cagra.1725s0044 Capsella grandiflora Cagra.1725s0044 I 0.849
Cagra.2238s0017 Capsella grandiflora Cagra.2238s0017 N 0.788
Carubv10010918m.g Capsella rubella Carubv10010918m.g N 0.817
Carubv10018845m.g Capsella rubella Carubv10018845m.g I 0.841
Carubv10020688m.g Capsella rubella Carubv10020688m.g N 0.827
cassava11368.m1 Manihot esculenta cassava11368.m1 N 0.829
cassava16315.m1 Manihot esculenta cassava16315.m1 N 0.806
cassava39084.m1 Manihot esculenta cassava39084.m1 I 0.899
Ca_03306 Cicer arietinum Ca_03306 N 0.784
Ca_10533 Cicer arietinum Ca_10533 N 0.823
Ca_17532 Cicer arietinum Ca_17532 N 0.812
Ca_20689 Cicer arietinum Ca_20689 N 0.838
chr2.CM0225.20.nc Lotus japonicus chr2.CM0225.20.nc N 0.806
chr2.CM0608.630.nc Lotus japonicus chr2.CM0608.630.nc N 0.829
chr6.CM0041.30.nd Lotus japonicus chr6.CM0041.30.nd N 0.817
Ciclev10003896m.g Citrus clementina Ciclev10003896m.g N 0.803
Ciclev10010237m.g Citrus clementina Ciclev10010237m.g N 0.817
Ciclev10013824m.g Citrus clementina Ciclev10013824m.g N 0.889
Ciclev10025985m.g Citrus clementina Ciclev10025985m.g I 0.836
Ciclev10033673m.g Citrus clementina Ciclev10033673m.g N 0.787
Cla015555 Citrullus lanatus Cla015555 N 0.809
Cla017294 Citrullus lanatus Cla017294 N 0.822
Cla019044 Citrullus lanatus Cla019044 N 0.816
Cla020765 Citrullus lanatus Cla020765 N 0.795
Cucsa.106090 Cucumis sativus Cucsa.106090 N 0.813
Cucsa.170790 Cucumis sativus Cucsa.170790 I 0.843
Cucsa.282940 Cucumis sativus Cucsa.282940 N 0.823
Eucgr.B03412 Eucalyptus grandis Eucgr.B03412 I 0.861
Eucgr.C00238 Eucalyptus grandis Eucgr.C00238 N 0.790
Eucgr.F03987 Eucalyptus grandis Eucgr.F03987 I 0.845
Eucgr.I01921 Eucalyptus grandis Eucgr.I01921 N 0.870
Eucgr.J00316 Eucalyptus grandis Eucgr.J00316 I 0.807
Eucgr.J02131 Eucalyptus grandis Eucgr.J02131 N 0.889
evm.TU.contig_28586.3 Carica papaya evm.TU.contig_28586.3 N 0.851
evm.TU.supercontig_14.38 Carica papaya evm.TU.supercontig_14.38 N 0.843
evm.TU.supercontig_199.10 Carica papaya evm.TU.supercontig_199.10 I 0.840
evm.TU.supercontig_54.28 Carica papaya evm.TU.supercontig_54.28 N 0.811
e_gw1.261.8.1 Physcomitrella patens e_gw1.261.8.1 N 0.723
e_gw1.32.189.1 Physcomitrella patens e_gw1.32.189.1 N 0.798
F775_02064 Aegilops tauschii F775_02064 N 0.863
F775_02400 Aegilops tauschii F775_02400 I 0.877
F775_06373 Aegilops tauschii F775_06373 N 0.764
ADAP Arabidopsis lyrata fgenesh2_kg.1__1760__AT1G16060.1 N 0.823
fgenesh2_kg.2__2276__AT1G79700.2 Arabidopsis lyrata fgenesh2_kg.2__2276__AT1G79700.2 I 0.858
WRI1 Arabidopsis lyrata fgenesh2_kg.5__1822__AT3G54320.1 N 0.807
gene00377-v1.0-hybrid Fragaria vesca gene00377-v1.0-hybrid N 0.783
gene01262-v1.0-hybrid Fragaria vesca gene01262-v1.0-hybrid I 0.872
gene15913-v1.0-hybrid Fragaria vesca gene15913-v1.0-hybrid N 0.815
gene27659-v1.0-hybrid Fragaria vesca gene27659-v1.0-hybrid N 0.813
GLYMA02G36880 Glycine max GLYMA02G36880 I 0.834
GLYMA04G24010 Glycine max GLYMA04G24010 N 0.812
GLYMA06G30840 Glycine max GLYMA06G30840 N 0.813
GLYMA07G02380 Glycine max GLYMA07G02380 I 0.849
GLYMA08G23630 Glycine max GLYMA08G23630 I 0.849
GLYMA08G24420 Glycine max GLYMA08G24420 N 0.781
GLYMA08G40831 Glycine max GLYMA08G40831 N 0.918
GLYMA09G37540 Glycine max GLYMA09G37540 N 0.869
GLYMA15G34770 Glycine max GLYMA15G34770 N 0.778
GLYMA17G07860 Glycine max GLYMA17G07860 I 0.834
GLYMA18G16236 Glycine max GLYMA18G16236 N 0.919
GLYMA18G49101 Glycine max GLYMA18G49101 N 0.869
Gorai.001G256900 Gossypium raimondii Gorai.001G256900 N 0.840
Gorai.006G025100 Gossypium raimondii Gorai.006G025100 N 0.824
Gorai.008G182500 Gossypium raimondii Gorai.008G182500 N 0.808
Gorai.009G008800 Gossypium raimondii Gorai.009G008800 I 0.823
Gorai.009G122000 Gossypium raimondii Gorai.009G122000 I 0.845
Gorai.011G225700 Gossypium raimondii Gorai.011G225700 I 0.831
Gorai.012G056300 Gossypium raimondii Gorai.012G056300 N 0.819
Gorai.012G098200 Gossypium raimondii Gorai.012G098200 I 0.840
Gorai.013G003400 Gossypium raimondii Gorai.013G003400 I 0.805
GRMZM2G073982 Zea mays GRMZM2G073982 N 0.933
GRMZM2G113078 Zea mays GRMZM2G113078 I 0.888
GRMZM2G124524 Zea mays GRMZM2G124524 I 0.837
GRMZM2G131266 Zea mays GRMZM2G131266 N 0.758
GRMZM2G141219 Zea mays GRMZM2G141219 I 0.853
GRMZM2G174834 Zea mays GRMZM2G174834 I 0.799
GRMZM2G366434 Zea mays GRMZM2G366434 I 0.681
GSMUA_Achr3G03630_001 Musa acuminata GSMUA_Achr3G03630_001 I 0.872
GSMUA_Achr3G09410_001 Musa acuminata GSMUA_Achr3G09410_001 N 0.680
GSMUA_Achr3G32510_001 Musa acuminata GSMUA_Achr3G32510_001 N 0.718
GSMUA_Achr4G32280_001 Musa acuminata GSMUA_Achr4G32280_001 I 0.681
GSMUA_Achr5G04670_001 Musa acuminata GSMUA_Achr5G04670_001 N 0.809
GSMUA_Achr7G00740_001 Musa acuminata GSMUA_Achr7G00740_001 I 0.682
GSMUA_Achr8G09350_001 Musa acuminata GSMUA_Achr8G09350_001 I 0.838
LjSGA_030627.1 Lotus japonicus LjSGA_030627.1 N 0.689
LPERR05G19870 Leersia perrieri LPERR05G19870 I 0.888
LPERR08G13500 Leersia perrieri LPERR08G13500 N 0.802
LPERR09G07570 Leersia perrieri LPERR09G07570 N 0.821
LPERR12G01610 Leersia perrieri LPERR12G01610 N 0.751
Lus10001553.g Linum usitatissimum Lus10001553.g N 0.817
Lus10005253.g Linum usitatissimum Lus10005253.g N 0.877
Lus10008939.g Linum usitatissimum Lus10008939.g N 0.777
Lus10013268.g Linum usitatissimum Lus10013268.g N 0.886
Lus10024101.g Linum usitatissimum Lus10024101.g I 0.845
Lus10028880.g Linum usitatissimum Lus10028880.g N 0.778
Lus10030671.g Linum usitatissimum Lus10030671.g N 0.877
Lus10030792.g Linum usitatissimum Lus10030792.g N 0.892
Lus10036719.g Linum usitatissimum Lus10036719.g I 0.899
Lus10037209.g Linum usitatissimum Lus10037209.g I 0.899
Lus10041618.g Linum usitatissimum Lus10041618.g I 0.850
MDP0000133423 Malus domestica MDP0000133423 N 0.813
MDP0000166059 Malus domestica MDP0000166059 N 0.737
MDP0000186581 Malus domestica MDP0000186581 N 0.860
MDP0000206674 Malus domestica MDP0000206674 N 0.871
MDP0000231748 Malus domestica MDP0000231748 N 0.815
MDP0000281784 Malus domestica MDP0000281784 I 0.889
MDP0000297698 Malus domestica MDP0000297698 N 0.860
MDP0000318457 Malus domestica MDP0000318457 N 0.813
mg013664m Mimulus guttatus mg013664m N 0.824
mgf008907m Mimulus guttatus mgf008907m I 0.806
mgf017413m Mimulus guttatus mgf017413m N 0.784
mgf019116m Mimulus guttatus mgf019116m N 0.795
mgf019814m Mimulus guttatus mgf019814m N 0.835
MTR_2g460730 Medicago truncatula MTR_2g460730 N 0.817
MTR_4g007770 Medicago truncatula MTR_4g007770 N 0.812
MTR_4g130270 Medicago truncatula MTR_4g130270 I 0.810
MTR_6g011490 Medicago truncatula MTR_6g011490 N 0.820
MTR_7g009410 Medicago truncatula MTR_7g009410 N 0.824
MTR_8g044040 Medicago truncatula MTR_8g044040 N 0.790
MTR_8g044070 Medicago truncatula MTR_8g044070 N 0.791
MTR_8g468920 Medicago truncatula MTR_8g468920 N 0.827
OB01G43640 Oryza brachyantha OB01G43640 N 0.678
OB05G31600 Oryza brachyantha OB05G31600 I 0.860
OB08G23780 Oryza brachyantha OB08G23780 N 0.681
OB09G17420 Oryza brachyantha OB09G17420 I 0.851
OB11G11380 Oryza brachyantha OB11G11380 I 0.798
OB12G11690 Oryza brachyantha OB12G11690 I 0.798
OBART06G03040 Oryza barthii OBART06G03040 N 0.933
OBART09G10730 Oryza barthii OBART09G10730 N 0.821
OBART12G01740 Oryza barthii OBART12G01740 N 0.752
OGLUM08G17060 Oryza glumaepatula OGLUM08G17060 N 0.802
OGLUM09G11130 Oryza glumaepatula OGLUM09G11130 I 0.851
OLONG_002862 Oryza longistaminata OLONG_002862 N 0.821
OLONG_014256 Oryza longistaminata OLONG_014256 I 0.848
OMERI01G26790 Oryza meridionalis OMERI01G26790 I 0.888
OMERI06G03270 Oryza meridionalis OMERI06G03270 N 0.900
OMERI08G13500 Oryza meridionalis OMERI08G13500 N 0.802
OMERI09G08520 Oryza meridionalis OMERI09G08520 N 0.821
OMERI11G02080 Oryza meridionalis OMERI11G02080 N 0.767
OMERI12G00060 Oryza meridionalis OMERI12G00060 N 0.767
ONIVA03G39530 Oryza nivara ONIVA03G39530 N 0.767
ONIVA06G03970 Oryza nivara ONIVA06G03970 N 0.933
ONIVA08G17820 Oryza nivara ONIVA08G17820 N 0.802
ONIVA09G10420 Oryza nivara ONIVA09G10420 I 0.851
ONIVA11G01800 Oryza nivara ONIVA11G01800 N 0.767
OPUNC05G21440 Oryza punctata OPUNC05G21440 I 0.848
OPUNC06G02740 Oryza punctata OPUNC06G02740 N 0.770
OPUNC08G14310 Oryza punctata OPUNC08G14310 N 0.796
OPUNC09G09320 Oryza punctata OPUNC09G09320 N 0.809
OPUNC11G01540 Oryza punctata OPUNC11G01540 N 0.767
OPUNC12G01560 Oryza punctata OPUNC12G01560 N 0.767
orange1.1g018990m.g Citrus sinensis orange1.1g018990m.g I 0.836
orange1.1g036423m.g Citrus sinensis orange1.1g036423m.g N 0.803
orange1.1g042319m.g Citrus sinensis orange1.1g042319m.g N 0.889
orange1.1g043551m.g Citrus sinensis orange1.1g043551m.g N 0.759
ORGLA04G0150400 Oryza glaberrima ORGLA04G0150400 I 0.682
ORGLA06G0029800 Oryza glaberrima ORGLA06G0029800 N 0.933
ORGLA08G0142100 Oryza glaberrima ORGLA08G0142100 I 0.839
ORGLA09G0079700 Oryza glaberrima ORGLA09G0079700 I 0.851
ORGLA11G0014900 Oryza glaberrima ORGLA11G0014900 I 0.798
ORGLA12G0015400 Oryza glaberrima ORGLA12G0015400 N 0.767
ORUFI06G03000 Oryza rufipogon ORUFI06G03000 N 0.933
ORUFI08G18170 Oryza rufipogon ORUFI08G18170 N 0.802
ORUFI09G11510 Oryza rufipogon ORUFI09G11510 N 0.821
OS04G0504500 Oryza sativa OS04G0504500 I 0.682
OS05G0536250 Oryza sativa OS05G0536250 I 0.848
OS06G0145700 Oryza sativa OS06G0145700 N 0.907
OS08G0442400 Oryza sativa OS08G0442400 I 0.839
OS09G0423800 Oryza sativa OS09G0423800 I 0.851
OS12G0126300 Oryza sativa OS12G0126300 I 0.798
Pavir.Ba03911 Panicum virgatum Pavir.Ba03911 I 0.697
Pavir.Bb00216 Panicum virgatum Pavir.Bb00216 I 0.688
Pavir.Bb02213 Panicum virgatum Pavir.Bb02213 I 0.857
Pavir.Ia00425 Panicum virgatum Pavir.Ia00425 I 0.680
Pavir.Ia03819 Panicum virgatum Pavir.Ia03819 I 0.687
Pavir.J02216 Panicum virgatum Pavir.J02216 I 0.888
Pavir.J07914 Panicum virgatum Pavir.J07914 I 0.682
Pavir.J08481 Panicum virgatum Pavir.J08481 N 0.719
Pavir.J24038 Panicum virgatum Pavir.J24038 I 0.686
Pavir.J34675 Panicum virgatum Pavir.J34675 I 0.888
Pavir.J34903 Panicum virgatum Pavir.J34903 N 0.719
PDK_20s13009417g005 Phoenix dactylifera PDK_20s13009417g005 N 0.857
PDK_20s1726381g002 Phoenix dactylifera PDK_20s1726381g002 N 0.747
PGSC0003DMG400002399 Solanum tuberosum PGSC0003DMG400002399 N 0.855
PGSC0003DMG400027502 Solanum tuberosum PGSC0003DMG400027502 N 0.766
PK04008.1 Cannabis sativa PK04008.1 I 0.832
PK24809.1 Cannabis sativa PK24809.1 I 0.867
PK26651.1 Cannabis sativa PK26651.1 I 0.840
Pm006561 Prunus mume Pm006561 N 0.809
Pm008629 Prunus mume Pm008629 I 0.840
Pm013856 Prunus mume Pm013856 N 0.816
Pm015843 Prunus mume Pm015843 N 0.791
Pm015847 Prunus mume Pm015847 N 0.824
Pm017032 Prunus mume Pm017032 N 0.807
POPTR_0001s03300 Populus trichocarpa POPTR_0001s03300 I 0.841
POPTR_0003s18350 Populus trichocarpa POPTR_0003s18350 N 0.808
POPTR_0006s19360 Populus trichocarpa POPTR_0006s19360 N 0.754
POPTR_0008s01260 Populus trichocarpa POPTR_0008s01260 N 0.707
POPTR_0010s10290 Populus trichocarpa POPTR_0010s10290 N 0.816
POPTR_0010s25340 Populus trichocarpa POPTR_0010s25340 N 0.752
POPTR_0017s11470 Populus trichocarpa POPTR_0017s11470 N 0.829
POPTR_0018s11110 Populus trichocarpa POPTR_0018s11110 N 0.817
PRUPE_ppa007768mg Prunus persica PRUPE_ppa007768mg N 0.816
PRUPE_ppa022243mg Prunus persica PRUPE_ppa022243mg N 0.809
PRUPE_ppa022978mg Prunus persica PRUPE_ppa022978mg N 0.824
PRUPE_ppa023152mg Prunus persica PRUPE_ppa023152mg I 0.840
PRUPE_ppa024318mg Prunus persica PRUPE_ppa024318mg N 0.829
SapurV1A.0036s0830 Salix purpurea SapurV1A.0036s0830 N 0.790
SapurV1A.0070s0630 Salix purpurea SapurV1A.0070s0630 N 0.734
SapurV1A.0153s0330 Salix purpurea SapurV1A.0153s0330 I 0.840
SapurV1A.1535s0040 Salix purpurea SapurV1A.1535s0040 I 0.841
SapurV1A.1603s0090 Salix purpurea SapurV1A.1603s0090 I 0.841
Sb02g025080 Sorghum bicolor Sb02g025080 I 0.851
Sb04g025960 Sorghum bicolor Sb04g025960 I 0.682
Sb05g001790 Sorghum bicolor Sb05g001790 I 0.837
Sb07g021800 Sorghum bicolor Sb07g021800 N 0.742
Sb09g026800 Sorghum bicolor Sb09g026800 I 0.888
Sb10g003160 Sorghum bicolor Sb10g003160 N 0.933
SELMODRAFT_108361 Selaginella moellendorffii SELMODRAFT_108361 N 0.710
SELMODRAFT_129793 Selaginella moellendorffii SELMODRAFT_129793 N 0.797
SELMODRAFT_78076 Selaginella moellendorffii SELMODRAFT_78076 N 0.781
SELMODRAFT_85823 Selaginella moellendorffii SELMODRAFT_85823 N 0.821
Si007857m.g Setaria italica Si007857m.g N 0.928
Si012026m.g Setaria italica Si012026m.g N 0.802
Si013842m.g Setaria italica Si013842m.g N 0.744
Si022186m.g Setaria italica Si022186m.g I 0.888
Si026433m.g Setaria italica Si026433m.g N 0.802
Si030129m.g Setaria italica Si030129m.g I 0.851
Solyc01g096860.1 Solanum lycopersicum Solyc01g096860.1 I 0.804
Solyc03g117720.2 Solanum lycopersicum Solyc03g117720.2 I 0.846
Solyc06g066390.1 Solanum lycopersicum Solyc06g066390.1 N 0.869
Solyc06g068570.2 Solanum lycopersicum Solyc06g068570.2 I 0.840
Solyc12g010490.1 Solanum lycopersicum Solyc12g010490.1 N 0.788
TCM_011797 Theobroma cacao TCM_011797 N 0.801
TCM_018386 Theobroma cacao TCM_018386 N 0.883
TCM_027569 Theobroma cacao TCM_027569 I 0.840
TCM_038442 Theobroma cacao TCM_038442 N 0.813
TCM_044588 Theobroma cacao TCM_044588 I 0.835
Thhalv10008118m.g Eutrema salsugineum Thhalv10008118m.g I 0.849
Thhalv10010394m.g Eutrema salsugineum Thhalv10010394m.g N 0.807
Thhalv10018877m.g Eutrema salsugineum Thhalv10018877m.g N 0.785
Traes_1BL_3EFA4A82D Triticum aestivum Traes_1BL_3EFA4A82D N 0.829
Traes_1DL_633B39E24 Triticum aestivum Traes_1DL_633B39E24 N 0.700
Traes_4AL_C863DCEDC Triticum aestivum Traes_4AL_C863DCEDC N 0.900
Traes_5AL_F8DEBE8E7 Triticum aestivum Traes_5AL_F8DEBE8E7 I 0.802
Traes_5BL_B6C71B544 Triticum aestivum Traes_5BL_B6C71B544 I 0.856
Traes_5DL_2CF55DD05 Triticum aestivum Traes_5DL_2CF55DD05 I 0.802
Traes_7AS_A70A185F1 Triticum aestivum Traes_7AS_A70A185F1 N 0.928
TRIUR3_01982 Triticum urartu TRIUR3_01982 I 0.877
TRIUR3_04644 Triticum urartu TRIUR3_04644 N 0.740
TRIUR3_24036 Triticum urartu TRIUR3_24036 N 0.775
VIT_01s0026g01690 Vitis vinifera VIT_01s0026g01690 N 0.830
VIT_09s0018g01650 Vitis vinifera VIT_09s0018g01650 I 0.840
VIT_11s0037g00870 Vitis vinifera VIT_11s0037g00870 N 0.801
WRI1 Vitis vinifera VIT_13s0047g00340 N 0.742
VIT_14s0108g00050 Vitis vinifera VIT_14s0108g00050 N 0.829