Cmyd_10021475 (Chelonia mydas)
ARID/BRIGHT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01388 (ARID) IPR001606 Cmyd_10021475 T015891_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Arid5b
M01661_2.00 		Mus musculus
NDATWHNN
NNDWATHN		 PBM
Weirauch et al.(2014)
pTH4426 		0.785 1.000
ARID5B
M08707_2.00 		Homo sapiens
DNBKDRTATTSKD
HMSAATAYHMVNH		 Misc
Kulakovskiy et al.(2013)
ARI5B_HUMAN.H11MO.0.C 		0.785 1.000
Arid5b
M08708_2.00 		Mus musculus
DNBKDRTATTSKD
HMSAATAYHMVNH		 Misc
Kulakovskiy et al.(2013)
ARI5B_MOUSE.H11MO.0.C 		0.785 1.000
ARID5B
M09767_2.00 		Homo sapiens
KBDGTATTGTRSWB
VWSYACAATACHVM		 Transfac
Matys et al.(2006)
V$MRF2_01 		0.785 1.000
Arid5a
M00116_2.00 		Mus musculus
NHAATATTDNN
NNHAATATTDN		 PBM
Badis et al.(2009)
Arid5a_3770 		0.632 0.744
Arid5a
M01663_2.00 		Rattus norvegicus
NNNRWATHNN
NNDATWYNNN		 PBM
Weirauch et al.(2014)
pTH5121 		0.632 0.744
arid6
M01657_2.00 		Danio rerio
NNRWATYN
NRATWYNN		 PBM
Weirauch et al.(2014)
pTH5120 		0.605 0.605
e_gw.4.260.1_CONSTRUCT
M01668_2.00 		PBM CONSTRUCTS
NNNDATHNNN
NNNDATHNNN		 PBM
Weirauch et al.(2014)
pTH5122 		0.482 0.593
For this family, TFs with SR scores > 0.422 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10021475 ARID/BRIGHT 78 164

Links

Other ARID/BRIGHT family TFs
Other Chelonia mydas TFs

149 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29635.m000461 Ricinus communis 29635.m000461 I 0.000
29813.m001543 Ricinus communis 29813.m001543 I 0.000
30068.m002623 Ricinus communis 30068.m002623 I 0.000
30084.m000185 Ricinus communis 30084.m000185 I 0.000
30174.m008961 Ricinus communis 30174.m008961 I 0.000
30174.m009031 Ricinus communis 30174.m009031 I 0.000
AMTR_s00003p00165930 Amborella trichopoda AMTR_s00003p00165930 I 0.000
AMTR_s00006p00266920 Amborella trichopoda AMTR_s00006p00266920 I 0.000
AMTR_s00058p00066390 Amborella trichopoda AMTR_s00058p00066390 I 0.000
AMTR_s00068p00102110 Amborella trichopoda AMTR_s00068p00102110 I 0.000
AMTR_s00069p00132820 Amborella trichopoda AMTR_s00069p00132820 I 0.000
Aquca_002_00706 Aquilegia coerulea Aquca_002_00706 I 0.000
Aquca_004_00669 Aquilegia coerulea Aquca_004_00669 I 0.000
Aquca_013_00424 Aquilegia coerulea Aquca_013_00424 I 0.000
Aquca_026_00181 Aquilegia coerulea Aquca_026_00181 I 0.000
RAP2-11 Arabidopsis thaliana AT5G19790 D 0.000
BGIOSGA025360 Oryza indica BGIOSGA025360 I 0.000
BGIOSGA031114 Oryza indica BGIOSGA031114 I 0.000
BGIOSGA037681 Oryza indica BGIOSGA037681 I 0.000
Bo2g018360 Brassica oleracea Bo2g018360 I 0.000
Bo3g013830 Brassica oleracea Bo3g013830 I 0.000
Bo9g152440 Brassica oleracea Bo9g152440 I 0.000
Bostr.26527s0221 Boechera stricta Bostr.26527s0221 I 0.000
Bra002262 Brassica rapa Bra002262 I 0.000
Bra006518 Brassica rapa Bra006518 I 0.000
Bra020063 Brassica rapa Bra020063 I 0.000
BRADI1G54450 Brachypodium distachyon BRADI1G54450 I 0.000
Cagra.1268s0022 Capsella grandiflora Cagra.1268s0022 I 0.000
Carubv10002733m.g Capsella rubella Carubv10002733m.g I 0.000
cassava1773.valid.m1 Manihot esculenta cassava1773.valid.m1 I 0.000
cassava23953.valid.m1 Manihot esculenta cassava23953.valid.m1 I 0.000
cassava28630.m1 Manihot esculenta cassava28630.m1 I 0.000
cassava40212.m1 Manihot esculenta cassava40212.m1 I 0.000
cassava4119.m1 Manihot esculenta cassava4119.m1 I 0.000
cassava4189.m1 Manihot esculenta cassava4189.m1 I 0.000
cassava47343.m1 Manihot esculenta cassava47343.m1 N 0.000
cassava4942.m1 Manihot esculenta cassava4942.m1 I 0.000
cassava9290.m1 Manihot esculenta cassava9290.m1 I 0.000
cassava9303.m1 Manihot esculenta cassava9303.m1 I 0.000
Ca_00417 Cicer arietinum Ca_00417 I 0.000
Ca_08232 Cicer arietinum Ca_08232 I 0.000
Ca_10494 Cicer arietinum Ca_10494 I 0.000
Ca_16397 Cicer arietinum Ca_16397 I 0.000
Ca_25424 Cicer arietinum Ca_25424 I 0.000
chr1.CM0284.80.nd Lotus japonicus chr1.CM0284.80.nd N 0.000
chr1.CM0371.120.nc Lotus japonicus chr1.CM0371.120.nc I 0.000
Ciclev10013796m.g Citrus clementina Ciclev10013796m.g I 0.000
Ciclev10021611m.g Citrus clementina Ciclev10021611m.g I 0.000
Ciclev10023360m.g Citrus clementina Ciclev10023360m.g I 0.000
Ciclev10023764m.g Citrus clementina Ciclev10023764m.g I 0.000
Ciclev10033847m.g Citrus clementina Ciclev10033847m.g I 0.000
Cla005054 Citrullus lanatus Cla005054 N 0.000
Cla010474 Citrullus lanatus Cla010474 I 0.000
Cla012318 Citrullus lanatus Cla012318 I 0.000
Cucsa.152770 Cucumis sativus Cucsa.152770 I 0.000
Cucsa.158080 Cucumis sativus Cucsa.158080 I 0.000
Cucsa.193280 Cucumis sativus Cucsa.193280 N 0.000
Cucsa.258020 Cucumis sativus Cucsa.258020 I 0.000
Cucsa.334870 Cucumis sativus Cucsa.334870 I 0.000
Eucgr.A02109 Eucalyptus grandis Eucgr.A02109 I 0.000
Eucgr.B03605 Eucalyptus grandis Eucgr.B03605 I 0.000
Eucgr.I02007 Eucalyptus grandis Eucgr.I02007 I 0.000
Eucgr.J01042 Eucalyptus grandis Eucgr.J01042 N 0.000
evm.TU.supercontig_14.126 Carica papaya evm.TU.supercontig_14.126 I 0.000
evm.TU.supercontig_18.194 Carica papaya evm.TU.supercontig_18.194 I 0.000
evm.TU.supercontig_51.136 Carica papaya evm.TU.supercontig_51.136 I 0.000
evm.TU.supercontig_62.63 Carica papaya evm.TU.supercontig_62.63 I 0.000
F775_02727 Aegilops tauschii F775_02727 I 0.000
F775_04303 Aegilops tauschii F775_04303 I 0.000
gene01844-v1.0-hybrid Fragaria vesca gene01844-v1.0-hybrid N 0.000
gene04400-v1.0-hybrid Fragaria vesca gene04400-v1.0-hybrid I 0.000
gene16598-v1.0-hybrid Fragaria vesca gene16598-v1.0-hybrid I 0.000
gene16905-v1.0-hybrid Fragaria vesca gene16905-v1.0-hybrid I 0.000
gene24824-v1.0-hybrid Fragaria vesca gene24824-v1.0-hybrid I 0.000
GLYMA03G01931 Glycine max GLYMA03G01931 I 0.000
GLYMA07G08542 Glycine max GLYMA07G08542 I 0.000
GLYMA13G05690 Glycine max GLYMA13G05690 I 0.000
GLYMA13G29920 Glycine max GLYMA13G29920 N 0.000
GLYMA15G09190 Glycine max GLYMA15G09190 N 0.000
GLYMA16G04410 Glycine max GLYMA16G04410 I 0.000
GLYMA18G49761 Glycine max GLYMA18G49761 I 0.000
GLYMA19G03120 Glycine max GLYMA19G03120 I 0.000
GLYMA19G03165 Glycine max GLYMA19G03165 I 0.000
GLYMA19G29000 Glycine max GLYMA19G29000 I 0.000
Gorai.004G127900 Gossypium raimondii Gorai.004G127900 N 0.000
Gorai.006G013600 Gossypium raimondii Gorai.006G013600 I 0.000
Gorai.007G260900 Gossypium raimondii Gorai.007G260900 I 0.000
Gorai.008G116800 Gossypium raimondii Gorai.008G116800 I 0.000
Gorai.008G178900 Gossypium raimondii Gorai.008G178900 I 0.000
Gorai.008G261800 Gossypium raimondii Gorai.008G261800 I 0.000
Gorai.013G115000 Gossypium raimondii Gorai.013G115000 I 0.000
Gorai.013G244500 Gossypium raimondii Gorai.013G244500 I 0.000
GRMZM2G010100 Zea mays GRMZM2G010100 I 0.000
GRMZM2G018138 Zea mays GRMZM2G018138 I 0.000
GRMZM2G039112 Zea mays GRMZM2G039112 I 0.000
GSMUA_Achr3G12350_001 Musa acuminata GSMUA_Achr3G12350_001 I 0.000
GSMUA_Achr4G28070_001 Musa acuminata GSMUA_Achr4G28070_001 I 0.000
GSMUA_Achr4G28640_001 Musa acuminata GSMUA_Achr4G28640_001 I 0.000
LjT06B04.30.nd Lotus japonicus LjT06B04.30.nd N 0.000
LPERR07G05890 Leersia perrieri LPERR07G05890 I 0.000
LPERR09G12960 Leersia perrieri LPERR09G12960 I 0.000
LPERR12G14340 Leersia perrieri LPERR12G14340 I 0.000
Lus10001298.g Linum usitatissimum Lus10001298.g I 0.000
Lus10008291.g Linum usitatissimum Lus10008291.g N 0.000
Lus10010652.g Linum usitatissimum Lus10010652.g I 0.000
Lus10012703.g Linum usitatissimum Lus10012703.g I 0.000
Lus10013764.g Linum usitatissimum Lus10013764.g I 0.000
Lus10030430.g Linum usitatissimum Lus10030430.g I 0.000
Lus10036556.g Linum usitatissimum Lus10036556.g I 0.000
Lus10036793.g Linum usitatissimum Lus10036793.g I 0.000
Lus10037137.g Linum usitatissimum Lus10037137.g I 0.000
Lus10039171.g Linum usitatissimum Lus10039171.g I 0.000
Lus10041372.g Linum usitatissimum Lus10041372.g I 0.000
MDP0000127123 Malus domestica MDP0000127123 N 0.000
MDP0000128326 Malus domestica MDP0000128326 I 0.000
MDP0000133476 Malus domestica MDP0000133476 I 0.000
MDP0000138669 Malus domestica MDP0000138669 I 0.000
MDP0000157628 Malus domestica MDP0000157628 I 0.000
MDP0000177547 Malus domestica MDP0000177547 I 0.000
MDP0000197375 Malus domestica MDP0000197375 I 0.000
MDP0000276536 Malus domestica MDP0000276536 I 0.000
MDP0000316843 Malus domestica MDP0000316843 N 0.000
MDP0000525933 Malus domestica MDP0000525933 I 0.000
MDP0000551969 Malus domestica MDP0000551969 I 0.000
mgf018851m Mimulus guttatus mgf018851m I 0.000
mgf022665m Mimulus guttatus mgf022665m I 0.000
mgf022810m Mimulus guttatus mgf022810m I 0.000
mgf023693m Mimulus guttatus mgf023693m I 0.000
MLOC_18783 Hordeum vulgare MLOC_18783 I 0.000
MLOC_7255 Hordeum vulgare MLOC_7255 I 0.000
MTR_2g016730 Medicago truncatula MTR_2g016730 N 0.000
MTR_4g082345 Medicago truncatula MTR_4g082345 I 0.000
MTR_6g012970 Medicago truncatula MTR_6g012970 I 0.000
MTR_6g029180 Medicago truncatula MTR_6g029180 I 0.000
MTR_7g011630 Medicago truncatula MTR_7g011630 I 0.000
MTR_7g085810 Medicago truncatula MTR_7g085810 I 0.000
MTR_8g032610 Medicago truncatula MTR_8g032610 I 0.000
OB07G15030 Oryza brachyantha OB07G15030 I 0.000
OB09G23520 Oryza brachyantha OB09G23520 I 0.000
OBART07G06690 Oryza barthii OBART07G06690 I 0.000
OBART12G17080 Oryza barthii OBART12G17080 I 0.000
OGLUM07G06400 Oryza glumaepatula OGLUM07G06400 I 0.000
OGLUM09G17450 Oryza glumaepatula OGLUM09G17450 I 0.000
OGLUM12G18720 Oryza glumaepatula OGLUM12G18720 I 0.000
OLONG_022569 Oryza longistaminata OLONG_022569 I 0.000
OMERI09G12500 Oryza meridionalis OMERI09G12500 I 0.000
OMERI11G15200 Oryza meridionalis OMERI11G15200 I 0.000
ONIVA01G29960 Oryza nivara ONIVA01G29960 I 0.000
ONIVA09G17920 Oryza nivara ONIVA09G17920 I 0.000
ONIVA12G15550 Oryza nivara ONIVA12G15550 I 0.000
OPUNC07G06390 Oryza punctata OPUNC07G06390 I 0.000
OPUNC09G15300 Oryza punctata OPUNC09G15300 I 0.000
OPUNC12G15550 Oryza punctata OPUNC12G15550 I 0.000
orange1.1g016393m.g Citrus sinensis orange1.1g016393m.g I 0.000
orange1.1g023169m.g Citrus sinensis orange1.1g023169m.g I 0.000
orange1.1g037119m.g Citrus sinensis orange1.1g037119m.g I 0.000
orange1.1g043751m.g Citrus sinensis orange1.1g043751m.g I 0.000
orange1.1g046190m.g Citrus sinensis orange1.1g046190m.g I 0.000
orange1.1g046337m.g Citrus sinensis orange1.1g046337m.g I 0.000
ORGLA07G0057000 Oryza glaberrima ORGLA07G0057000 I 0.000
ORGLA12G0200400 Oryza glaberrima ORGLA12G0200400 I 0.000
ORUFI07G06610 Oryza rufipogon ORUFI07G06610 I 0.000
ORUFI09G18220 Oryza rufipogon ORUFI09G18220 I 0.000
ORUFI12G19000 Oryza rufipogon ORUFI12G19000 I 0.000
OS07G0204000 Oryza sativa OS07G0204000 I 0.000
OS12G0582900 Oryza sativa OS12G0582900 I 0.000
Pavir.Ba01277 Panicum virgatum Pavir.Ba01277 I 0.000
Pavir.Ba03636 Panicum virgatum Pavir.Ba03636 I 0.000
Pavir.Bb00676 Panicum virgatum Pavir.Bb00676 I 0.000
Pavir.Cb00448 Panicum virgatum Pavir.Cb00448 I 0.000
Pavir.Ia01300 Panicum virgatum Pavir.Ia01300 I 0.000
Pavir.Ib03934 Panicum virgatum Pavir.Ib03934 I 0.000
Pavir.J28133 Panicum virgatum Pavir.J28133 I 0.000
Pavir.J28151 Panicum virgatum Pavir.J28151 I 0.000
PGSC0003DMG400001343 Solanum tuberosum PGSC0003DMG400001343 I 0.000
PGSC0003DMG400005621 Solanum tuberosum PGSC0003DMG400005621 N 0.000
PGSC0003DMG400017051 Solanum tuberosum PGSC0003DMG400017051 I 0.000
PGSC0003DMG400023701 Solanum tuberosum PGSC0003DMG400023701 I 0.000
PGSC0003DMG400025151 Solanum tuberosum PGSC0003DMG400025151 I 0.000
PK13330.1 Cannabis sativa PK13330.1 I 0.000
PK25269.1 Cannabis sativa PK25269.1 I 0.000
PK28640.1 Cannabis sativa PK28640.1 I 0.000
Pm000004 Prunus mume Pm000004 I 0.000
Pm008788 Prunus mume Pm008788 I 0.000
Pm015931 Prunus mume Pm015931 I 0.000
Pm025326 Prunus mume Pm025326 I 0.000
Pm030235 Prunus mume Pm030235 I 0.000
POPTR_0001s04190 Populus trichocarpa POPTR_0001s04190 I 0.000
POPTR_0001s45740 Populus trichocarpa POPTR_0001s45740 N 0.000
POPTR_0002s15480 Populus trichocarpa POPTR_0002s15480 N 0.000
POPTR_0003s21090 Populus trichocarpa POPTR_0003s21090 I 0.000
POPTR_0008s09080 Populus trichocarpa POPTR_0008s09080 I 0.000
POPTR_0010s17110 Populus trichocarpa POPTR_0010s17110 I 0.000
POPTR_0014s07280 Populus trichocarpa POPTR_0014s07280 I 0.000
POPTR_0017s12370 Populus trichocarpa POPTR_0017s12370 I 0.000
PRUPE_ppa016109mg Prunus persica PRUPE_ppa016109mg I 0.000
PRUPE_ppa018710mg Prunus persica PRUPE_ppa018710mg I 0.000
PRUPE_ppa019500mg Prunus persica PRUPE_ppa019500mg N 0.000
PRUPE_ppa022202mg Prunus persica PRUPE_ppa022202mg I 0.000
PRUPE_ppa025010mg Prunus persica PRUPE_ppa025010mg I 0.000
PRUPE_ppa025828mg Prunus persica PRUPE_ppa025828mg I 0.000
SapurV1A.0081s0430 Salix purpurea SapurV1A.0081s0430 I 0.000
SapurV1A.0322s0110 Salix purpurea SapurV1A.0322s0110 I 0.000
SapurV1A.0918s0170 Salix purpurea SapurV1A.0918s0170 I 0.000
SapurV1A.1886s0020 Salix purpurea SapurV1A.1886s0020 I 0.000
SapurV1A.2432s0010 Salix purpurea SapurV1A.2432s0010 I 0.000
Sb01g014810 Sorghum bicolor Sb01g014810 I 0.000
Sb02g006023 Sorghum bicolor Sb02g006023 I 0.000
Sb02g030350 Sorghum bicolor Sb02g030350 I 0.000
Sb08g019530 Sorghum bicolor Sb08g019530 I 0.000
RAP2.11 Arabidopsis lyrata scaffold_602074.1 I 0.000
SELMODRAFT_73140 Selaginella moellendorffii SELMODRAFT_73140 I 0.000
SELMODRAFT_73145 Selaginella moellendorffii SELMODRAFT_73145 I 0.000
Si024417m.g Setaria italica Si024417m.g I 0.000
Si027288m.g Setaria italica Si027288m.g I 0.000
Si032213m.g Setaria italica Si032213m.g I 0.000
Si033237m.g Setaria italica Si033237m.g I 0.000
Si038848m.g Setaria italica Si038848m.g I 0.000
Solyc01g005630.1 Solanum lycopersicum Solyc01g005630.1 I 0.000
Solyc01g091760.2 Solanum lycopersicum Solyc01g091760.2 I 0.000
Solyc02g067020.1 Solanum lycopersicum Solyc02g067020.1 I 0.000
Solyc03g119800.1 Solanum lycopersicum Solyc03g119800.1 N 0.000
Solyc10g080650.1 Solanum lycopersicum Solyc10g080650.1 I 0.000
TCM_005425 Theobroma cacao TCM_005425 I 0.000
TCM_011632 Theobroma cacao TCM_011632 I 0.000
TCM_014471 Theobroma cacao TCM_014471 I 0.000
TCM_015579 Theobroma cacao TCM_015579 I 0.000
TCM_018659 Theobroma cacao TCM_018659 I 0.000
TCM_025913 Theobroma cacao TCM_025913 I 0.000
TCM_040015 Theobroma cacao TCM_040015 I 0.000
Thhalv10015715m.g Eutrema salsugineum Thhalv10015715m.g I 0.000
Traes_5DS_1BDB9837E Triticum aestivum Traes_5DS_1BDB9837E I 0.000
VIT_02s0025g03170 Vitis vinifera VIT_02s0025g03170 N 0.000
VIT_06s0004g00490 Vitis vinifera VIT_06s0004g00490 I 0.000
RAP2.11 Vitis vinifera VIT_08s0007g07250 I 0.000
VIT_14s0108g01220 Vitis vinifera VIT_14s0108g01220 I 0.000
VIT_17s0000g04480 Vitis vinifera VIT_17s0000g04480 I 0.000