Gfo_R009655 (Geospiza fortis)
BED ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02892 (zf-BED) IPR003656 Gfo_R009655 T028001_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZBED1
M02771_2.00 		Homo sapiens
HTRTCGCGACATR
YATGTCGCGAYAD		 SELEX
Jolma et al.(2013)
ZBED1_1 		1.000 1.000
ZBED1
M04056_2.00 		Homo sapiens
VTRTCGCGAYAT
ATRTCGCGAYAB		 SELEX
Yin et al.(2017)
ZBED1_eDBD_HT-SELEX 		1.000 1.000
ZBED1
M09776_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$DREF_01 		1.000 1.000
ZBED1
M04057_2.00 		Homo sapiens
MTRTCGCGAYAK
MTRTCGCGAYAK		 SELEX
Yin et al.(2017)
ZBED1_eDBD_Methyl-HT-SELEX 		1.000 1.000
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R009655 BED ZF 23 72

Links

Other BED ZF family TFs
Other Geospiza fortis TFs

35 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_009_00954 Aquilegia coerulea Aquca_009_00954 N
BGIOSGA010017 Oryza indica BGIOSGA010017 N
BRADI4G43680 Brachypodium distachyon BRADI4G43680 N
cassava2361.valid.m1 Manihot esculenta cassava2361.valid.m1 N
cassava31335.valid.m1 Manihot esculenta cassava31335.valid.m1 N
Ciclev10011141m.g Citrus clementina Ciclev10011141m.g N
Ciclev10030787m.g Citrus clementina Ciclev10030787m.g N
F775_08186 Aegilops tauschii F775_08186 N
gene18433-v1.0-hybrid Fragaria vesca gene18433-v1.0-hybrid N
Gorai.011G266200 Gossypium raimondii Gorai.011G266200 N
GRMZM2G049159 Zea mays GRMZM2G049159 N
GRMZM2G098784 Zea mays GRMZM2G098784 N
LPERR03G24920 Leersia perrieri LPERR03G24920 N
mgf011165m Mimulus guttatus mgf011165m N
MLOC_73193 Hordeum vulgare MLOC_73193 N
OB03G37330 Oryza brachyantha OB03G37330 N
OBART03G30260 Oryza barthii OBART03G30260 N
OGLUM03G30480 Oryza glumaepatula OGLUM03G30480 N
OLONG_013585 Oryza longistaminata OLONG_013585 N
OMERI03G26460 Oryza meridionalis OMERI03G26460 N
ONIVA03G31510 Oryza nivara ONIVA03G31510 N
OPUNC03G27510 Oryza punctata OPUNC03G27510 N
orange1.1g004488m.g Citrus sinensis orange1.1g004488m.g N
orange1.1g004514m.g Citrus sinensis orange1.1g004514m.g N
ORGLA03G0287000 Oryza glaberrima ORGLA03G0287000 N
ORUFI03G31480 Oryza rufipogon ORUFI03G31480 N
OS03G0690600 Oryza sativa OS03G0690600 N
Pavir.Ia03770 Panicum virgatum Pavir.Ia03770 N
Pavir.J32327 Panicum virgatum Pavir.J32327 N
PGSC0003DMG400008904 Solanum tuberosum PGSC0003DMG400008904 N
PGSC0003DMG400019200 Solanum tuberosum PGSC0003DMG400019200 N
Pm002685 Prunus mume Pm002685 N
POPTR_0006s08690 Populus trichocarpa POPTR_0006s08690 N
PRUPE_ppa001883mg Prunus persica PRUPE_ppa001883mg N
SapurV1A.0001s1700 Salix purpurea SapurV1A.0001s1700 N
Sb01g039670 Sorghum bicolor Sb01g039670 N
Si034417m.g Setaria italica Si034417m.g N
Solyc09g010920.1 Solanum lycopersicum Solyc09g010920.1 N
Solyc10g086530.1 Solanum lycopersicum Solyc10g086530.1 N
TCM_021920 Theobroma cacao TCM_021920 N
Traes_4DS_050789E2A Triticum aestivum Traes_4DS_050789E2A N
Traes_5BL_C8BEC527F Triticum aestivum Traes_5BL_C8BEC527F N
Traes_5DL_8FD0CF6B9 Triticum aestivum Traes_5DL_8FD0CF6B9 N
Traes_5DL_E275797CE Triticum aestivum Traes_5DL_E275797CE N
VIT_08s0007g00510 Vitis vinifera VIT_08s0007g00510 N