Gfo_R012065 (Geospiza fortis)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Gfo_R012065 T047348_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Twist2
M01718_2.00 		Mus musculus
NACATATGKN
NMCATATGTN		 PBM
Weirauch et al.(2014)
pTH5033 		0.914 1.000
TWIST1
M08052_2.00 		Homo sapiens
NNNCCAGATGTNN
NNACATCTGGNNN		 ChIP-seq
Mathelier et al.(2014)
MA1123.1 		0.914 0.962
TWIST1
M08722_2.00 		Homo sapiens
WAATBRRWWMCAGATGB
VCATCTGKWWYYVATTW		 Misc
Kulakovskiy et al.(2013)
TWST1_HUMAN.H11MO.0.A 		0.914 0.962
Twist1
M08766_2.00 		Mus musculus
WAATNRRWWMCAKMTGB
VCAKMTGKWWYYNATTW		 Misc
Kulakovskiy et al.(2013)
TWST1_MOUSE.H11MO.0.B 		0.914 0.962
TWIST1
M09831_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TWIST_Q6_01 		0.914 0.962
TWIST1
M09832_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TWIST_Q6 		0.914 0.962
twi
M03605_2.00 		Drosophila melanogaster
MACACRTGKB
VMCAYGTGTK		 SELEX
Nitta et al.(2015)
twi_1 		0.859 0.827
twi
M03606_2.00 		Drosophila melanogaster
MNDCMYRHCGVD
HBCGDYRKGHNK		 SELEX
Nitta et al.(2015)
twi_2 		0.859 0.827
twi
M05955_2.00 		Drosophila melanogaster
VCCAGATGTB
VACATCTGGB		 B1H
Zhu et al.(2011)
twi_da_SANGER_5_FBgn0003900 		0.859 0.827
twi
M05956_2.00 		Drosophila melanogaster
NAACAYRTGSNV
BNSCAYRTGTTN		 B1H
Zhu et al.(2011)
twi_FlyReg_FBgn0003900 		0.859 0.827
twi
M07538_2.00 		Drosophila melanogaster
NAACAYRTGSNV
BNSCAYRTGTTN		 DNaseI footprinting
Mathelier et al.(2014)
MA0249.1 		0.859 0.827
twi
M09657_2.00 		Drosophila melanogaster
AACAKVTGBBVD
HBVVCABMTGTT		 Misc
Kulakovskiy et al.(2009)
twi 		0.859 0.827
twi
M09892_2.00 		Drosophila melanogaster Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
I$TWI_Q6 		0.859 0.827
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R012065 bHLH 67 118

Links

Other bHLH family TFs
Other Geospiza fortis TFs

236 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R002277 Calypte anna Aan_R002277 I
Aan_R005866 Calypte anna Aan_R005866 I
Aan_R007025 Calypte anna Aan_R007025 I
Afo_R003680 Aptenodytes forsteri Afo_R003680 I
Afo_R008930 Aptenodytes forsteri Afo_R008930 I
Alligator_sinensis_CCG010967.1 Alligator sinensis Alligator_sinensis_CCG010967.1 I
Brh_R006709 Buceros rhinoceros Brh_R006709 I
Cmyd_10009744 Chelonia mydas Cmyd_10009744 I
LIN28B Anolis carolinensis ENSACAG00000003957 I
ENSACAG00000017764 Anolis carolinensis ENSACAG00000017764 I
ENSAMEG00000010582 Ailuropoda melanoleuca ENSAMEG00000010582 I
ENSAMEG00000011453 Ailuropoda melanoleuca ENSAMEG00000011453 I
ENSAMXG00000001433 Astyanax mexicanus ENSAMXG00000001433 I
ENSAMXG00000001573 Astyanax mexicanus ENSAMXG00000001573 I
ENSAMXG00000001888 Astyanax mexicanus ENSAMXG00000001888 I
ENSAMXG00000016813 Astyanax mexicanus ENSAMXG00000016813 I
ENSAPLG00000014264 Anas platyrhynchos ENSAPLG00000014264 I
ENSBTAG00000040497 Bos taurus ENSBTAG00000040497 I
LIN28B Bos taurus ENSBTAG00000043973 I
ENSBTAG00000048256 Bos taurus ENSBTAG00000048256 I
ENSBTAP00000004196-D2 Bos grunniens ENSBTAP00000004196-D2 I
ENSBTAP00000053651-D1 Bos grunniens ENSBTAP00000053651-D1 I
LIN28B Canis familiaris ENSCAFG00000003598 I
LIN28A Canis familiaris ENSCAFG00000012488 I
LIN28B Choloepus hoffmanni ENSCHOG00000001682 I
LIN28A Choloepus hoffmanni ENSCHOG00000002073 I
LIN28B Callithrix jacchus ENSCJAG00000001671 I
LIN28A Callithrix jacchus ENSCJAG00000009796 I
ENSCJAG00000016916 Callithrix jacchus ENSCJAG00000016916 I
ENSCJAG00000021979 Callithrix jacchus ENSCJAG00000021979 I
ENSCJAG00000022770 Callithrix jacchus ENSCJAG00000022770 I
LIN28B Cavia porcellus ENSCPOG00000006178 I
ENSCPOG00000024027 Cavia porcellus ENSCPOG00000024027 I
ENSCSAG00000000975 Chlorocebus sabaeus ENSCSAG00000000975 I
ENSCSAG00000014708 Chlorocebus sabaeus ENSCSAG00000014708 I
LIN28A Danio rerio ENSDARG00000004328 I
lin28a Danio rerio ENSDARG00000016999 I
lin28b Danio rerio ENSDARG00000052511 I
LIN28A Dasypus novemcinctus ENSDNOG00000010710 I
LIN28B Dasypus novemcinctus ENSDNOG00000015300 I
LIN28A Equus caballus ENSECAG00000020267 I
LIN28B Equus caballus ENSECAG00000020994 I
LIN28B Erinaceus europaeus ENSEEUG00000003632 I
LIN28A Erinaceus europaeus ENSEEUG00000012085 I
LIN28B Echinops telfairi ENSETEG00000015340 I
ENSFALG00000000374 Ficedula albicollis ENSFALG00000000374 I
ENSFALG00000011574 Ficedula albicollis ENSFALG00000011574 I
LIN28B Felis catus ENSFCAG00000005058 I
LIN28A Felis catus ENSFCAG00000012810 I
LIN28A Homo sapiens ENSG00000131914 I
LIN28B Homo sapiens ENSG00000187772 D
lin28a Gasterosteus aculeatus ENSGACG00000007826 I
LIN28B Gasterosteus aculeatus ENSGACG00000009428 I
si:ch1073-284b18.2 Gasterosteus aculeatus ENSGACG00000013893 I
ENSGALG00000000388 Gallus gallus ENSGALG00000000388 I
LIN28B Gallus gallus ENSGALG00000026761 I
LIN28B Gorilla gorilla ENSGGOG00000015437 I
LIN28A Gorilla gorilla ENSGGOG00000024918 I
ENSGMOG00000010704 Gadus morhua ENSGMOG00000010704 I
ENSGMOG00000015523 Gadus morhua ENSGMOG00000015523 I
ENSGMOG00000015660 Gadus morhua ENSGMOG00000015660 I
ENSLACG00000002747 Latimeria chalumnae ENSLACG00000002747 I
ENSLACG00000004053 Latimeria chalumnae ENSLACG00000004053 I
LIN28A Loxodonta africana ENSLAFG00000017525 I
LIN28B Loxodonta africana ENSLAFG00000017788 I
ENSLOCG00000003353 Lepisosteus oculatus ENSLOCG00000003353 I
ENSLOCG00000016539 Lepisosteus oculatus ENSLOCG00000016539 I
ENSMEUG00000008743 Macropus eugenii ENSMEUG00000008743 I
LIN28A Meleagris gallopavo ENSMGAG00000009456 I
ENSMICG00000002297 Microcebus murinus ENSMICG00000002297 I
LIN28B Myotis lucifugus ENSMLUG00000006883 I
ENSMLUG00000010158 Myotis lucifugus ENSMLUG00000010158 I
LIN28B Macaca mulatta ENSMMUG00000014470 I
ENSMMUP00000018998 Macaca fascicularis ENSMMUP00000018998 I
LIN28A Monodelphis domestica ENSMODG00000014236 I
LIN28B Monodelphis domestica ENSMODG00000018035 I
ENSMPUG00000009489 Mustela putorius furo ENSMPUG00000009489 I
ENSMPUG00000015724 Mustela putorius furo ENSMPUG00000015724 I
Lin28a Mus musculus ENSMUSG00000050966 I
Lin28b Mus musculus ENSMUSG00000063804 I
ENSNLEG00000009294 Nomascus leucogenys ENSNLEG00000009294 I
ENSNLEG00000014146 Nomascus leucogenys ENSNLEG00000014146 I
LIN28B Ornithorhynchus anatinus ENSOANG00000010299 I
ENSOARG00000003913 Ovis aries ENSOARG00000003913 I
ENSOARG00000004614 Ovis aries ENSOARG00000004614 I
ENSOARG00000011404 Ovis aries ENSOARG00000011404 I
ENSOCUG00000000299 Oryctolagus cuniculus ENSOCUG00000000299 I
ENSOCUG00000011640 Oryctolagus cuniculus ENSOCUG00000011640 I
LIN28B Oryctolagus cuniculus ENSOCUG00000017850 I
ENSOCUG00000027473 Oryctolagus cuniculus ENSOCUG00000027473 I
ENSOCUG00000027786 Oryctolagus cuniculus ENSOCUG00000027786 I
LIN28A Otolemur garnettii ENSOGAG00000003971 I
LIN28B Otolemur garnettii ENSOGAG00000011042 I
ENSONIG00000014706 Oreochromis niloticus ENSONIG00000014706 I
ENSONIG00000016204 Oreochromis niloticus ENSONIG00000016204 I
LIN28A Ochotona princeps ENSOPRG00000001591 I
LIN28B Oryzias latipes ENSORLG00000012891 I
si:ch1073-284b18.2 Oryzias latipes ENSORLG00000014369 I
ENSP00000254231 Macaca fascicularis ENSP00000254231 I
ENSPANG00000005196 Papio anubis ENSPANG00000005196 I
ENSPANG00000009841 Papio anubis ENSPANG00000009841 I
ENSPFOG00000014054 Poecilia formosa ENSPFOG00000014054 I
ENSPFOG00000019352 Poecilia formosa ENSPFOG00000019352 I
ENSPPYG00000001684 Pongo abelii ENSPPYG00000001684 I
ENSPPYG00000016875 Pongo abelii ENSPPYG00000016875 I
ENSPSIG00000002635 Pelodiscus sinensis ENSPSIG00000002635 I
LIN28A Pan troglodytes ENSPTRG00000000384 I
LIN28B Pan troglodytes ENSPTRG00000018453 I
LIN28B Pteropus vampyrus ENSPVAG00000008797 I
LIN28A Pteropus vampyrus ENSPVAG00000017267 I
Lin28b Rattus norvegicus ENSRNOG00000025938 I
Lin28a Rattus norvegicus ENSRNOG00000060320 I
LIN28B Sorex araneus ENSSARG00000008374 I
ENSSHAG00000012434 Sarcophilus harrisii ENSSHAG00000012434 I
LIN28A Sus scrofa ENSSSCG00000003557 I
ENSSSCG00000004365 Sus scrofa ENSSSCG00000004365 I
ENSSTOG00000002692 Ictidomys tridecemlineatus ENSSTOG00000002692 I
ENSSTOG00000004329 Ictidomys tridecemlineatus ENSSTOG00000004329 I
ENSTGUG00000001037 Taeniopygia guttata ENSTGUG00000001037 I
LIN28B Taeniopygia guttata ENSTGUG00000012225 I
lin28a Tetraodon nigroviridis ENSTNIG00000009802 I
LIN28B Tetraodon nigroviridis ENSTNIG00000012302 I
si:ch1073-284b18.2 Takifugu rubripes ENSTRUG00000006069 I
LIN28B Takifugu rubripes ENSTRUG00000008428 I
lin28a Takifugu rubripes ENSTRUG00000009454 I
ENSTSYG00000006480 Tarsius syrichta ENSTSYG00000006480 I
ENSTSYG00000011513 Tarsius syrichta ENSTSYG00000011513 I
LIN28A Tursiops truncatus ENSTTRG00000005678 I
LIN28B Tursiops truncatus ENSTTRG00000014919 I
ENSVPAG00000008073 Vicugna pacos ENSVPAG00000008073 I
ENSXMAG00000003450 Xiphophorus maculatus ENSXMAG00000003450 I
ENSXMAG00000014593 Xiphophorus maculatus ENSXMAG00000014593 I
Gfo_R011576 Geospiza fortis Gfo_R011576 I
Gfo_R012200 Geospiza fortis Gfo_R012200 I
Myotis_brandtii_Lin28a_10029661 Myotis brandtii Myotis_brandtii_Lin28a_10029661 I
Myotis_brandtii_LIN28B_10034705 Myotis brandtii Myotis_brandtii_LIN28B_10034705 I
Ogr09706 Ophisaurus gracilis Ogr09706 I
Pvit_09294 Pogona vitticeps Pvit_09294 I
Pvit_17184 Pogona vitticeps Pvit_17184 I
lin28b Xenopus tropicalis XB-GENE-1218969 I
lin28b.S Xenopus laevis XB-GENE-1218973 I
lin28a Xenopus tropicalis XB-GENE-491384 I
lin28a.S Xenopus laevis XB-GENE-866059 I
yakG040859 Bos grunniens yakG040859 I