tcf3 (Xenopus tropicalis)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 XB-GENE-478265 T051780_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Tcf4
M01750_2.00 		Mus musculus
VCAGVTGBN
NVCABCTGB		 PBM
Weirauch et al.(2014)
pTH5101 		0.858 0.808
TCF4
M02807_2.00 		Homo sapiens
HRCACCTGBN
NVCAGGTGYD		 SELEX
Jolma et al.(2013)
TCF4_1 		0.858 0.808
TCF4
M02808_2.00 		Homo sapiens
NVCACCTBBN
NVVAGGTGBN		 SELEX
Jolma et al.(2013)
TCF4_2 		0.858 0.808
TCF4
M02728_2.00 		Homo sapiens
RCACCTG
CAGGTGY		 SELEX
Jolma et al.(2010)
TCF4_dimer 		0.858 0.808
TCF4
M04214_2.00 		Homo sapiens
VCACCTGB
VCAGGTGB		 SELEX
Yin et al.(2017)
TCF4_eDBD_HT-SELEX 		0.858 0.808
Tcf4
M08775_2.00 		Mus musculus
HRCACCTGB
VCAGGTGYD		 Misc
Kulakovskiy et al.(2013)
ITF2_MOUSE.H11MO.0.B 		0.858 0.808
TCF4
M09461_2.00 		Homo sapiens
ASWTCAAAGRVN
NBYCTTTGAWST		 Misc
Heinz et al.(2010)
Hct116-Tcf4_SRA012054 		0.858 0.808
TCF4
M04215_2.00 		Homo sapiens
VCACCTGN
NCAGGTGB		 SELEX
Yin et al.(2017)
TCF4_eDBD_Methyl-HT-SELEX 		0.858 0.808
Tcf3
M00753_2.00 		Mus musculus
VCACCTGBN
NVCAGGTGB		 PBM
Weirauch et al.(2013)
pTH3866 		0.855 0.827
Tcf3
M01723_2.00 		Mus musculus
NNVCACSTGB
VCASGTGBNN		 PBM
Weirauch et al.(2014)
pTH4580 		0.855 0.827
Tcf3
M00118_2.00 		Mus musculus
VCAYCTGB
VCAGRTGB		 PBM
Badis et al.(2009)
Tcfe2a_3865 		0.855 0.827
Tcf12
M01740_2.00 		Mus musculus
NVCAYCTGB
VCAGRTGBN		 PBM
Weirauch et al.(2014)
pTH5071 		0.855 0.769
TCF12
M04137_2.00 		Homo sapiens
VCACSTGB
VCASGTGB		 SELEX
Yin et al.(2017)
TCF12_eDBD_HT-SELEX 		0.855 0.769
Tcf12
M08062_2.00 		Mus musculus
RRCAGCTGNNN
NNNCAGCTGYY		 ChIP-seq
Mathelier et al.(2014)
MA0521.1 		0.855 0.769
TCF12
M07805_2.00 		Homo sapiens
NVDSCAGSTGB
VCASCTGSHBN		 ChIP-seq
Gerstein et al.(2012)
GM12878_TCF12_HudsonAlpha 		0.855 0.769
TCF12
M07806_2.00 		Homo sapiens
VCASCTGB
VCAGSTGB		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_TCF12_HudsonAlpha 		0.855 0.769
TCF12
M08731_2.00 		Homo sapiens
CMCASCTGSH
DSCAGSTGKG		 Misc
Kulakovskiy et al.(2013)
HTF4_HUMAN.H11MO.0.A 		0.855 0.769
Tcf12
M08762_2.00 		Mus musculus
VMCASCTGSH
DSCAGSTGKB		 Misc
Kulakovskiy et al.(2013)
HTF4_MOUSE.H11MO.0.A 		0.855 0.769
TCF12
M09458_2.00 		Homo sapiens
NNVCAGCTGB
VCAGCTGBNN		 Misc
Heinz et al.(2010)
GM12878-Tcf12_GSE32465 		0.855 0.769
TCF12
M09858_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HEB_Q6 		0.855 0.769
TCF12
M09859_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HTF4_Q2 		0.855 0.769
TCF12
M09860_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_01 		0.855 0.769
TCF12
M09861_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_03 		0.855 0.769
TCF12
M09862_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_05 		0.855 0.769
TCF12
M04138_2.00 		Homo sapiens
NCAYCTGN
NCAGRTGN		 SELEX
Yin et al.(2017)
TCF12_eDBD_Methyl-HT-SELEX 		0.855 0.769
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AAI36071 bHLH 553 606

Links

Other bHLH family TFs
Other Xenopus tropicalis TFs

160 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30190.m010807 Ricinus communis 30190.m010807 I
Aquca_013_00142 Aquilegia coerulea Aquca_013_00142 I
HMGB13 Arabidopsis thaliana AT4G11080 D
HMGB6 Arabidopsis thaliana AT4G23800 I
Bo1g037180 Brassica oleracea Bo1g037180 I
Bostr.25463s0218 Boechera stricta Bostr.25463s0218 I
Bostr.7867s0182 Boechera stricta Bostr.7867s0182 I
Bra013731 Brassica rapa Bra013731 I
Bra035256 Brassica rapa Bra035256 I
BRADI3G09690 Brachypodium distachyon BRADI3G09690 I
Cagra.1226s0043 Capsella grandiflora Cagra.1226s0043 I
Carubv10000930m.g Capsella rubella Carubv10000930m.g I
Carubv10007590m.g Capsella rubella Carubv10007590m.g I
Ca_05811 Cicer arietinum Ca_05811 I
chr4.CM0025.190.nd Lotus japonicus chr4.CM0025.190.nd I
Cla011101 Citrullus lanatus Cla011101 I
Cucsa.107270 Cucumis sativus Cucsa.107270 I
Eucgr.E00847 Eucalyptus grandis Eucgr.E00847 I
evm.TU.supercontig_122.41 Carica papaya evm.TU.supercontig_122.41 I
fgenesh2_kg.6__3081__AT4G11080.1 Arabidopsis lyrata fgenesh2_kg.6__3081__AT4G11080.1 I
gene32050-v1.0-hybrid Fragaria vesca gene32050-v1.0-hybrid I
GLYMA05G37010 Glycine max GLYMA05G37010 I
GLYMA08G02550 Glycine max GLYMA08G02550 N
Gorai.007G025500 Gossypium raimondii Gorai.007G025500 I
GSMUA_Achr6G14260_001 Musa acuminata GSMUA_Achr6G14260_001 I
Lus10001909.g Linum usitatissimum Lus10001909.g I
Lus10003904.g Linum usitatissimum Lus10003904.g I
mgf015439m Mimulus guttatus mgf015439m I
MTR_8g099305 Medicago truncatula MTR_8g099305 I
Pavir.J07596 Panicum virgatum Pavir.J07596 I
PGSC0003DMG400012298 Solanum tuberosum PGSC0003DMG400012298 I
PK10992.1 Cannabis sativa PK10992.1 I
Pm024077 Prunus mume Pm024077 I
POPTR_0001s10410 Populus trichocarpa POPTR_0001s10410 I
POPTR_0003s13780 Populus trichocarpa POPTR_0003s13780 I
PRUPE_ppa004611mg Prunus persica PRUPE_ppa004611mg I
SapurV1A.0035s0680 Salix purpurea SapurV1A.0035s0680 I
Sb04g009610 Sorghum bicolor Sb04g009610 I
Si017040m.g Setaria italica Si017040m.g I
Solyc08g082070.2 Solanum lycopersicum Solyc08g082070.2 I
TCM_016416 Theobroma cacao TCM_016416 I
Thhalv10025168m.g Eutrema salsugineum Thhalv10025168m.g I
VIT_02s0025g01220 Vitis vinifera VIT_02s0025g01220 I