WIP3 (Arabidopsis lyrata)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 fgenesh1_pg.C_scaffold_1000684 T117339_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.C_scaffold_1000684 C2H2 ZF 258 279
fgenesh1_pg.C_scaffold_1000684 C2H2 ZF 278 304

Links

Other C2H2 ZF family TFs
Other Arabidopsis lyrata TFs

131 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29908.m006047 Ricinus communis 29908.m006047 N 0.773
30055.m001542 Ricinus communis 30055.m001542 N 0.785
30061.m000294 Ricinus communis 30061.m000294 N 0.759
Aquca_004_00109 Aquilegia coerulea Aquca_004_00109 N 0.803
Aquca_006_00227 Aquilegia coerulea Aquca_006_00227 N 0.803
Aquca_040_00077 Aquilegia coerulea Aquca_040_00077 N 0.803
WIP3 Arabidopsis thaliana AT1G08290 N 0.827
BGIOSGA031001 Oryza indica BGIOSGA031001 N 0.769
Bo5g008880 Brassica oleracea Bo5g008880 N 0.817
Bo8g112550 Brassica oleracea Bo8g112550 N 0.817
Bostr.1040s0072 Boechera stricta Bostr.1040s0072 N 0.790
Bostr.25219s0116 Boechera stricta Bostr.25219s0116 N 0.821
Bra018638 Brassica rapa Bra018638 N 0.817
Bra031621 Brassica rapa Bra031621 N 0.817
BRADI3G39820 Brachypodium distachyon BRADI3G39820 N 0.769
BRADI4G33557 Brachypodium distachyon BRADI4G33557 N 0.763
Cagra.0764s0003 Capsella grandiflora Cagra.0764s0003 N 0.790
Cagra.4395s0018 Capsella grandiflora Cagra.4395s0018 N 0.827
Carubv10009617m.g Capsella rubella Carubv10009617m.g N 0.827
Carubv10012266m.g Capsella rubella Carubv10012266m.g N 0.790
cassava13451.valid.m1 Manihot esculenta cassava13451.valid.m1 N 0.785
cassava16214.m1 Manihot esculenta cassava16214.m1 N 0.779
cassava39829.m1 Manihot esculenta cassava39829.m1 N 0.759
cassava44390.m1 Manihot esculenta cassava44390.m1 N 0.773
Ca_07051 Cicer arietinum Ca_07051 N 0.785
Ca_16482 Cicer arietinum Ca_16482 N 0.785
Ca_27078 Cicer arietinum Ca_27078 N 0.773
chr3.CM1144.10.nc Lotus japonicus chr3.CM1144.10.nc N 0.779
Ciclev10003648m.g Citrus clementina Ciclev10003648m.g N 0.773
Ciclev10028757m.g Citrus clementina Ciclev10028757m.g N 0.785
Cla000184 Citrullus lanatus Cla000184 N 0.792
Cla002714 Citrullus lanatus Cla002714 N 0.763
Cla015481 Citrullus lanatus Cla015481 N 0.759
Cucsa.050260 Cucumis sativus Cucsa.050260 N 0.759
Cucsa.065460 Cucumis sativus Cucsa.065460 N 0.765
Cucsa.199850 Cucumis sativus Cucsa.199850 N 0.792
Cucsa.248320 Cucumis sativus Cucsa.248320 N 0.763
Eucgr.B03870 Eucalyptus grandis Eucgr.B03870 N 0.785
Eucgr.F00336 Eucalyptus grandis Eucgr.F00336 N 0.782
evm.TU.contig_31438 Carica papaya evm.TU.contig_31438 N 0.769
evm.TU.contig_35924 Carica papaya evm.TU.contig_35924 N 0.785
evm.TU.supercontig_1.215 Carica papaya evm.TU.supercontig_1.215 N 0.763
F775_14972 Aegilops tauschii F775_14972 N 0.763
TT1 Arabidopsis lyrata fgenesh2_kg.1__3606__AT1G34790.1 N 0.790
gene22042-v1.0-hybrid Fragaria vesca gene22042-v1.0-hybrid N 0.779
GLYMA08G16390 Glycine max GLYMA08G16390 N 0.759
GLYMA11G19060 Glycine max GLYMA11G19060 N 0.785
GLYMA12G09400 Glycine max GLYMA12G09400 N 0.785
GLYMA12G30930 Glycine max GLYMA12G30930 N 0.785
GLYMA12G36660 Glycine max GLYMA12G36660 N 0.759
GLYMA13G01720 Glycine max GLYMA13G01720 N 0.773
GLYMA13G27371 Glycine max GLYMA13G27371 N 0.759
GLYMA13G39370 Glycine max GLYMA13G39370 N 0.785
GLYMA14G35140 Glycine max GLYMA14G35140 N 0.773
GLYMA15G42870 Glycine max GLYMA15G42870 N 0.759
Gorai.001G121700 Gossypium raimondii Gorai.001G121700 N 0.785
Gorai.004G037000 Gossypium raimondii Gorai.004G037000 N 0.759
Gorai.004G065400 Gossypium raimondii Gorai.004G065400 N 0.759
Gorai.006G111400 Gossypium raimondii Gorai.006G111400 N 0.785
Gorai.007G177300 Gossypium raimondii Gorai.007G177300 N 0.759
Gorai.010G039600 Gossypium raimondii Gorai.010G039600 N 0.773
GRMZM2G071101 Zea mays GRMZM2G071101 N 0.769
GRMZM2G084014 Zea mays GRMZM2G084014 N 0.763
GRMZM2G445684 Zea mays GRMZM2G445684 N 0.769
GSMUA_Achr3G03850_001 Musa acuminata GSMUA_Achr3G03850_001 N 0.759
GSMUA_Achr4G01560_001 Musa acuminata GSMUA_Achr4G01560_001 N 0.769
GSMUA_Achr9G12600_001 Musa acuminata GSMUA_Achr9G12600_001 N 0.759
LjSGA_032817.1 Lotus japonicus LjSGA_032817.1 N 0.773
LPERR08G16620 Leersia perrieri LPERR08G16620 N 0.769
LPERR09G10700 Leersia perrieri LPERR09G10700 N 0.769
Lus10004887.g Linum usitatissimum Lus10004887.g N 0.809
Lus10020597.g Linum usitatissimum Lus10020597.g N 0.809
Lus10029525.g Linum usitatissimum Lus10029525.g N 0.769
Lus10033454.g Linum usitatissimum Lus10033454.g N 0.773
Lus10039613.g Linum usitatissimum Lus10039613.g N 0.769
MDP0000131949 Malus domestica MDP0000131949 N 0.785
MDP0000300013 Malus domestica MDP0000300013 N 0.785
MDP0000573922 Malus domestica MDP0000573922 N 0.770
mgf022319m Mimulus guttatus mgf022319m N 0.759
mgf022981m Mimulus guttatus mgf022981m N 0.806
MLOC_2787 Hordeum vulgare MLOC_2787 N 0.763
OB08G26650 Oryza brachyantha OB08G26650 N 0.769
OBART08G19670 Oryza barthii OBART08G19670 N 0.769
OGLUM08G20830 Oryza glumaepatula OGLUM08G20830 N 0.769
OGLUM09G15150 Oryza glumaepatula OGLUM09G15150 N 0.769
OMERI08G16450 Oryza meridionalis OMERI08G16450 N 0.769
OMERI09G11270 Oryza meridionalis OMERI09G11270 N 0.769
ONIVA08G21960 Oryza nivara ONIVA08G21960 N 0.769
ONIVA09G15100 Oryza nivara ONIVA09G15100 N 0.769
OPUNC08G17810 Oryza punctata OPUNC08G17810 N 0.769
OPUNC09G12930 Oryza punctata OPUNC09G12930 N 0.769
orange1.1g037179m.g Citrus sinensis orange1.1g037179m.g N 0.773
orange1.1g039549m.g Citrus sinensis orange1.1g039549m.g N 0.785
ORGLA08G0173000 Oryza glaberrima ORGLA08G0173000 N 0.769
ORGLA09G0111700 Oryza glaberrima ORGLA09G0111700 N 0.769
ORUFI09G15680 Oryza rufipogon ORUFI09G15680 N 0.769
OS08G0504000 Oryza sativa OS08G0504000 N 0.769
OS09G0485600 Oryza sativa OS09G0485600 N 0.769
Pavir.Ba01731 Panicum virgatum Pavir.Ba01731 N 0.763
Pavir.Fa00506 Panicum virgatum Pavir.Fa00506 N 0.769
Pavir.Fb01879 Panicum virgatum Pavir.Fb01879 N 0.769
PGSC0003DMG400006808 Solanum tuberosum PGSC0003DMG400006808 N 0.769
PGSC0003DMG400007112 Solanum tuberosum PGSC0003DMG400007112 N 0.803
PGSC0003DMG400030803 Solanum tuberosum PGSC0003DMG400030803 N 0.782
PK05257.1 Cannabis sativa PK05257.1 N 0.779
Pm001374 Prunus mume Pm001374 N 0.785
POPTR_0001s27490 Populus trichocarpa POPTR_0001s27490 N 0.759
POPTR_0002s09840 Populus trichocarpa POPTR_0002s09840 N 0.782
POPTR_0004s19460 Populus trichocarpa POPTR_0004s19460 N 0.785
POPTR_0009s06700 Populus trichocarpa POPTR_0009s06700 N 0.759
POPTR_0009s14590 Populus trichocarpa POPTR_0009s14590 N 0.785
PRUPE_ppa023619mg Prunus persica PRUPE_ppa023619mg N 0.785
SapurV1A.0080s0360 Salix purpurea SapurV1A.0080s0360 N 0.785
SapurV1A.0219s0040 Salix purpurea SapurV1A.0219s0040 N 0.785
Sb02g028220 Sorghum bicolor Sb02g028220 N 0.763
Sb07g028010 Sorghum bicolor Sb07g028010 N 0.769
Si013819m.g Setaria italica Si013819m.g N 0.769
Si029897m.g Setaria italica Si029897m.g N 0.763
Solyc01g087050.2 Solanum lycopersicum Solyc01g087050.2 N 0.769
Solyc04g074320.1 Solanum lycopersicum Solyc04g074320.1 N 0.782
TCM_005892 Theobroma cacao TCM_005892 N 0.759
TCM_034881 Theobroma cacao TCM_034881 N 0.773
TCM_041441 Theobroma cacao TCM_041441 N 0.785
Thhalv10008125m.g Eutrema salsugineum Thhalv10008125m.g N 0.827
Traes_5BL_6888AE9CB Triticum aestivum Traes_5BL_6888AE9CB N 0.763
Traes_5DL_51643AC9F Triticum aestivum Traes_5DL_51643AC9F N 0.763
Traes_7AS_8054DC45D Triticum aestivum Traes_7AS_8054DC45D N 0.763
TRIUR3_30490 Triticum urartu TRIUR3_30490 N 0.763
DOT5 Vitis vinifera VIT_01s0011g03100 N 0.763
WIP3 Vitis vinifera VIT_06s0080g00270 N 0.785
TT1 Vitis vinifera VIT_18s0001g05860 N 0.773