cassava12169.valid.m1 (Manihot esculenta)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 cassava12169.valid.m1 T196005_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA28
M01996_2.00 		Arabidopsis thaliana
NNGATNN
NNATCNN		 PBM
Weirauch et al.(2014)
pTH7505 		0.843 0.806
GATA28
M06883_2.00 		Arabidopsis thaliana
GATGATGATGATGATGATG
CATCATCATCATCATCATC		 Dap-seq
OMalley et al.(2016)
ZML2_col_a 		0.843 0.806
GATA24
M01941_2.00 		Arabidopsis thaliana
HGATBNN
NNVATCD		 PBM
Weirauch et al.(2014)
pTH7661 		0.842 0.861
OS06G0698900
M02015_2.00 		Oryza sativa
NNNNAHBNN
NNVDTNNNN		 PBM
Weirauch et al.(2014)
pTH8641 		0.832 0.806
ZIM
M06892_2.00 		Arabidopsis thaliana
AWYSRACGGYYVWGA
TCWBRRCCGTYSRWT		 Dap-seq
OMalley et al.(2016)
ZIM_col_a 		0.810 0.861
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava12169.valid.m1 GATA 199 236

Links

Other GATA family TFs
Other Manihot esculenta TFs

114 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29838.m001724 Ricinus communis 29838.m001724 I 0.862
Aquca_007_00522 Aquilegia coerulea Aquca_007_00522 I 0.848
Aquca_010_00250 Aquilegia coerulea Aquca_010_00250 I 0.852
Aquca_018_00034 Aquilegia coerulea Aquca_018_00034 I 0.837
GATA28 Arabidopsis thaliana AT1G51600 D 0.843
GATA24 Arabidopsis thaliana AT3G21175 D 0.842
ZIM Arabidopsis thaliana AT4G24470 D 0.810
BGIOSGA007539 Oryza indica BGIOSGA007539 I 0.837
BGIOSGA020596 Oryza indica BGIOSGA020596 I 0.831
Bo1g039000 Brassica oleracea Bo1g039000 I 0.810
Bo1g108240 Brassica oleracea Bo1g108240 I 0.842
Bo3g181450 Brassica oleracea Bo3g181450 I 0.832
Bo5g103560 Brassica oleracea Bo5g103560 I 0.842
Bostr.26675s0048 Boechera stricta Bostr.26675s0048 I 0.832
Bostr.7867s0254 Boechera stricta Bostr.7867s0254 I 0.810
Bra013805 Brassica rapa Bra013805 I 0.810
Bra014292 Brassica rapa Bra014292 I 0.831
Bra023900 Brassica rapa Bra023900 I 0.842
Bra031258 Brassica rapa Bra031258 I 0.842
BRADI1G33980 Brachypodium distachyon BRADI1G33980 I 0.832
BRADI3G03800 Brachypodium distachyon BRADI3G03800 I 0.823
Cagra.1757s0004 Capsella grandiflora Cagra.1757s0004 I 0.842
Cagra.2171s0014 Capsella grandiflora Cagra.2171s0014 I 0.810
Cagra.2346s0015 Capsella grandiflora Cagra.2346s0015 I 0.837
Carubv10006355m.g Capsella rubella Carubv10006355m.g I 0.810
Carubv10009866m.g Capsella rubella Carubv10009866m.g I 0.837
Carubv10016131m.g Capsella rubella Carubv10016131m.g I 0.842
cassava6876.valid.m1 Manihot esculenta cassava6876.valid.m1 I 0.867
Ca_01471 Cicer arietinum Ca_01471 I 0.815
Ca_17522 Cicer arietinum Ca_17522 I 0.837
Ciclev10027306m.g Citrus clementina Ciclev10027306m.g I 0.837
Cla013127 Citrullus lanatus Cla013127 I 0.865
Cla015736 Citrullus lanatus Cla015736 I 0.836
Cucsa.218190 Cucumis sativus Cucsa.218190 I 0.867
Cucsa.359570 Cucumis sativus Cucsa.359570 I 0.837
Eucgr.J03166 Eucalyptus grandis Eucgr.J03166 I 0.837
evm.TU.supercontig_155.28 Carica papaya evm.TU.supercontig_155.28 I 0.836
e_gw1.226.30.1 Physcomitrella patens e_gw1.226.30.1 I 0.843
F775_08559 Aegilops tauschii F775_08559 I 0.837
fgenesh1_pm.scaffold_69000012 Physcomitrella patens fgenesh1_pm.scaffold_69000012 I 0.843
ZML1 Arabidopsis lyrata fgenesh2_kg.3__2338__AT3G21175.1 I 0.837
TIFY1 Arabidopsis lyrata fgenesh2_kg.7__1832__AT4G24470.2 I 0.810
fgenesh2_pm.scaffold_111000001 Physcomitrella patens fgenesh2_pm.scaffold_111000001 I 0.843
GLYMA08G23720 Glycine max GLYMA08G23720 I 0.837
Gorai.008G017800 Gossypium raimondii Gorai.008G017800 I 0.862
GRMZM2G058479 Zea mays GRMZM2G058479 I 0.837
GRMZM2G080509 Zea mays GRMZM2G080509 I 0.832
GSMUA_Achr10G06260_001 Musa acuminata GSMUA_Achr10G06260_001 I 0.837
GSMUA_Achr2G04520_001 Musa acuminata GSMUA_Achr2G04520_001 I 0.832
GSMUA_Achr3G05620_001 Musa acuminata GSMUA_Achr3G05620_001 I 0.832
GSMUA_Achr7G08720_001 Musa acuminata GSMUA_Achr7G08720_001 I 0.837
GSMUA_Achr9G13870_001 Musa acuminata GSMUA_Achr9G13870_001 I 0.837
gw1.68.123.1 Physcomitrella patens gw1.68.123.1 I 0.843
LjSGA_067759.1 Lotus japonicus LjSGA_067759.1 I 0.814
LPERR02G03330 Leersia perrieri LPERR02G03330 I 0.837
LPERR06G21800 Leersia perrieri LPERR06G21800 I 0.837
LPERR11G14110 Leersia perrieri LPERR11G14110 I 0.836
mgf016112m Mimulus guttatus mgf016112m I 0.851
MLOC_17061 Hordeum vulgare MLOC_17061 I 0.837
MLOC_3107 Hordeum vulgare MLOC_3107 I 0.837
MTR_3g100050 Medicago truncatula MTR_3g100050 I 0.810
MTR_4g008070 Medicago truncatula MTR_4g008070 I 0.805
OB02G13220 Oryza brachyantha OB02G13220 I 0.832
OB06G33840 Oryza brachyantha OB06G33840 I 0.837
OBART02G03780 Oryza barthii OBART02G03780 I 0.837
OBART06G26250 Oryza barthii OBART06G26250 I 0.832
OGLUM02G03560 Oryza glumaepatula OGLUM02G03560 I 0.837
OGLUM06G27650 Oryza glumaepatula OGLUM06G27650 I 0.832
OLONG_015069 Oryza longistaminata OLONG_015069 I 0.832
OMERI02G04610 Oryza meridionalis OMERI02G04610 I 0.837
OMERI06G26410 Oryza meridionalis OMERI06G26410 I 0.831
ONIVA02G03810 Oryza nivara ONIVA02G03810 I 0.837
ONIVA06G28780 Oryza nivara ONIVA06G28780 I 0.832
OPUNC02G02970 Oryza punctata OPUNC02G02970 I 0.832
OPUNC06G23830 Oryza punctata OPUNC06G23830 I 0.832
orange1.1g022728m.g Citrus sinensis orange1.1g022728m.g I 0.837
ORGLA02G0035000 Oryza glaberrima ORGLA02G0035000 I 0.837
ORGLA06G0219100 Oryza glaberrima ORGLA06G0219100 I 0.832
ORUFI02G03830 Oryza rufipogon ORUFI02G03830 I 0.837
ORUFI06G28170 Oryza rufipogon ORUFI06G28170 I 0.832
GATA17 Oryza sativa OS02G0148500 I 0.837
OS06G0698900 Oryza sativa OS06G0698900 D 0.832
Pavir.Da00166 Panicum virgatum Pavir.Da00166 I 0.842
Pavir.Db00254 Panicum virgatum Pavir.Db00254 I 0.842
PDK_20s1340921g001 Phoenix dactylifera PDK_20s1340921g001 I 0.837
PDK_20s1879741g001 Phoenix dactylifera PDK_20s1879741g001 I 0.842
PK11000.1 Cannabis sativa PK11000.1 I 0.836
Pm013048 Prunus mume Pm013048 I 0.832
Pm022163 Prunus mume Pm022163 I 0.862
POPTR_0007s03130 Populus trichocarpa POPTR_0007s03130 I 0.851
POPTR_0010s25810 Populus trichocarpa POPTR_0010s25810 I 0.837
POPTR_0017s06980 Populus trichocarpa POPTR_0017s06980 I 0.856
PRUPE_ppa009401mg Prunus persica PRUPE_ppa009401mg I 0.862
PRUPE_ppa009709mg Prunus persica PRUPE_ppa009709mg I 0.832
SapurV1A.0036s1170 Salix purpurea SapurV1A.0036s1170 I 0.837
SapurV1A.0187s0150 Salix purpurea SapurV1A.0187s0150 I 0.851
Sb10g028750 Sorghum bicolor Sb10g028750 I 0.837
ZML2 Arabidopsis lyrata scaffold_104929.1 I 0.843
SELMODRAFT_177195 Selaginella moellendorffii SELMODRAFT_177195 I 0.837
SELMODRAFT_423855 Selaginella moellendorffii SELMODRAFT_423855 I 0.837
Si006750m.g Setaria italica Si006750m.g I 0.842
TCM_007360 Theobroma cacao TCM_007360 I 0.851
TCM_027858 Theobroma cacao TCM_027858 I 0.837
Thhalv10011695m.g Eutrema salsugineum Thhalv10011695m.g I 0.832
Thhalv10020970m.g Eutrema salsugineum Thhalv10020970m.g I 0.837
Thhalv10025795m.g Eutrema salsugineum Thhalv10025795m.g I 0.810
Traes_6AS_4106E8E28 Triticum aestivum Traes_6AS_4106E8E28 I 0.837
Traes_6BS_AB5909D02 Triticum aestivum Traes_6BS_AB5909D02 I 0.837
Traes_6DS_6268D31AE Triticum aestivum Traes_6DS_6268D31AE I 0.837
Traes_7AL_EA6F4FFDE Triticum aestivum Traes_7AL_EA6F4FFDE I 0.837
Traes_7DL_A5ECEDA95 Triticum aestivum Traes_7DL_A5ECEDA95 I 0.837
TRIUR3_11107 Triticum urartu TRIUR3_11107 I 0.837
TRIUR3_32095 Triticum urartu TRIUR3_32095 I 0.837
VIT_09s0054g00440 Vitis vinifera VIT_09s0054g00440 I 0.837