CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
28650.m000187
(
Ricinus communis
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03514 (GRAS)
IPR005202
28650.m000187
T201997_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
28650.m000187
GRAS
313
684
LSTLLAQCAQSVSISDHRTATELLRQIRQHSSPYGDGNQRLAHYFANALETRLAGTGTPAYSPLLSSKTPVSDILKAYQVYVKACPFKRMSNFFANQTIFKLAEKATRLHIIDFGVLYGFQWPCLIQRLSQRPGGPPKLRITGIELPQPGFRPAERVEETGRRLQRYCERFNVPFKYHAVAQKWETIKYEDLNIDRGEMTVVNCLYRLRNLPDDTVVANSARDAVLKLIRKIRPDIFIHGVINGTYNAPFFVTRFREALFYYSALFDMFEINVPREDDQRMLYEKAIFGRDIMNVIACEGAERVERPETYKQWQVRNLRAGFRQLSLDQEILKKVRCTVRSEYHKDFVVDENGRWMLQGWKGRVISALSVWK
Links
Other
GRAS
family TFs
Other
Ricinus communis
TFs
27 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
28650.m000186
Ricinus communis
28650.m000186
N
0.705
cassava34368.m1
Manihot esculenta
cassava34368.m1
N
0.735
cassava34369.m1
Manihot esculenta
cassava34369.m1
N
0.873
Ciclev10027926m.g
Citrus clementina
Ciclev10027926m.g
N
0.700
Cucsa.117770
Cucumis sativus
Cucsa.117770
N
0.711
Eucgr.B02328
Eucalyptus grandis
Eucgr.B02328
N
0.705
evm.TU.supercontig_81.122
Carica papaya
evm.TU.supercontig_81.122
N
0.747
Gorai.003G130400
Gossypium raimondii
Gorai.003G130400
N
0.708
Gorai.009G098100
Gossypium raimondii
Gorai.009G098100
N
0.714
Lus10040787.g
Linum usitatissimum
Lus10040787.g
N
0.735
orange1.1g045051m.g
Citrus sinensis
orange1.1g045051m.g
N
0.703
Pm000712
Prunus mume
Pm000712
N
0.725
Pm000713
Prunus mume
Pm000713
N
0.703
Pm000717
Prunus mume
Pm000717
N
0.711
POPTR_0001s24890
Populus trichocarpa
POPTR_0001s24890
N
0.776
POPTR_0009s03850
Populus trichocarpa
POPTR_0009s03850
N
0.770
PRUPE_ppa002166mg
Prunus persica
PRUPE_ppa002166mg
N
0.711
PRUPE_ppa002472mg
Prunus persica
PRUPE_ppa002472mg
N
0.700
PRUPE_ppa019574mg
Prunus persica
PRUPE_ppa019574mg
N
0.711
PRUPE_ppa021807mg
Prunus persica
PRUPE_ppa021807mg
N
0.727
PRUPE_ppa026849mg
Prunus persica
PRUPE_ppa026849mg
N
0.714
SapurV1A.0040s0520
Salix purpurea
SapurV1A.0040s0520
N
0.806
SapurV1A.0041s0200
Salix purpurea
SapurV1A.0041s0200
N
0.759
TCM_041810
Theobroma cacao
TCM_041810
N
0.735
Traes_4DS_050789E2A
Triticum aestivum
Traes_4DS_050789E2A
N
0.725
Traes_5AL_9AE0ED26A
Triticum aestivum
Traes_5AL_9AE0ED26A
N
0.743
VIT_06s0004g04980
Vitis vinifera
VIT_06s0004g04980
N
0.705