fgenesh1_pg.scaffold_31000121 (Physcomitrella patens)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 fgenesh1_pg.scaffold_31000121 T227483_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.scaffold_31000121 Homeodomain 557 617

Links

Other Homeodomain family TFs
Other Physcomitrella patens TFs

2 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29646.m001078 Ricinus communis 29646.m001078 N
29737.m001209 Ricinus communis 29737.m001209 I
29738.m001043 Ricinus communis 29738.m001043 I
AMTR_s00002p00019320 Amborella trichopoda AMTR_s00002p00019320 I
AMTR_s00007p00170710 Amborella trichopoda AMTR_s00007p00170710 I
AMTR_s00010p00144270 Amborella trichopoda AMTR_s00010p00144270 I
AMTR_s00065p00184910 Amborella trichopoda AMTR_s00065p00184910 I
AMTR_s00101p00150740 Amborella trichopoda AMTR_s00101p00150740 I
Aquca_002_01095 Aquilegia coerulea Aquca_002_01095 I
Aquca_004_00748 Aquilegia coerulea Aquca_004_00748 I
Aquca_007_00571 Aquilegia coerulea Aquca_007_00571 N
Aquca_016_00200 Aquilegia coerulea Aquca_016_00200 I
Aquca_081_00012 Aquilegia coerulea Aquca_081_00012 I
BHLH30 Arabidopsis thaliana AT1G68810 I
BHLH66 Arabidopsis thaliana AT2G24260 I
BHLH32 Arabidopsis thaliana AT3G25710 I
LRL2 Arabidopsis thaliana AT4G30980 D
BHLH82 Arabidopsis thaliana AT5G58010 I
BGIOSGA021777 Oryza indica BGIOSGA021777 I
BGIOSGA026937 Oryza indica BGIOSGA026937 I
BGIOSGA029759 Oryza indica BGIOSGA029759 I
BGIOSGA029777 Oryza indica BGIOSGA029777 I
Bo1g011740 Brassica oleracea Bo1g011740 I
Bo2g028920 Brassica oleracea Bo2g028920 I
Bo2g138630 Brassica oleracea Bo2g138630 I
Bo3g018990 Brassica oleracea Bo3g018990 I
Bo4g154370 Brassica oleracea Bo4g154370 I
Bo6g095860 Brassica oleracea Bo6g095860 I
Bo6g108270 Brassica oleracea Bo6g108270 I
Bo7g081980 Brassica oleracea Bo7g081980 I
Bo8g099910 Brassica oleracea Bo8g099910 I
Bo9g133640 Brassica oleracea Bo9g133640 I
Bostr.0556s0241 Boechera stricta Bostr.0556s0241 I
Bostr.26833s0448 Boechera stricta Bostr.26833s0448 I
Bostr.26959s0001 Boechera stricta Bostr.26959s0001 I
Bostr.27895s0056 Boechera stricta Bostr.27895s0056 I
Bostr.7867s0954 Boechera stricta Bostr.7867s0954 I
Bra002679 Brassica rapa Bra002679 I
Bra004015 Brassica rapa Bra004015 I
Bra004338 Brassica rapa Bra004338 I
Bra006788 Brassica rapa Bra006788 I
Bra007863 Brassica rapa Bra007863 I
Bra011237 Brassica rapa Bra011237 I
Bra020398 Brassica rapa Bra020398 I
Bra025158 Brassica rapa Bra025158 I
Bra026510 Brassica rapa Bra026510 I
Bra032111 Brassica rapa Bra032111 I
BRADI1G47350 Brachypodium distachyon BRADI1G47350 I
BRADI1G67500 Brachypodium distachyon BRADI1G67500 I
BRADI3G36610 Brachypodium distachyon BRADI3G36610 N
BRADI4G29990 Brachypodium distachyon BRADI4G29990 N
Cagra.0380s0028 Capsella grandiflora Cagra.0380s0028 I
Cagra.0417s0002 Capsella grandiflora Cagra.0417s0002 I
Cagra.1157s0003 Capsella grandiflora Cagra.1157s0003 I
Cagra.2848s0086 Capsella grandiflora Cagra.2848s0086 I
Cagra.4091s0032 Capsella grandiflora Cagra.4091s0032 I
Carubv10005248m.g Capsella rubella Carubv10005248m.g I
Carubv10017470m.g Capsella rubella Carubv10017470m.g I
Carubv10020515m.g Capsella rubella Carubv10020515m.g I
Carubv10023532m.g Capsella rubella Carubv10023532m.g I
Carubv10028492m.g Capsella rubella Carubv10028492m.g I
cassava16550.m1 Manihot esculenta cassava16550.m1 I
cassava18812.valid.m1 Manihot esculenta cassava18812.valid.m1 I
cassava22164.valid.m1 Manihot esculenta cassava22164.valid.m1 I
cassava22165.valid.m1 Manihot esculenta cassava22165.valid.m1 I
cassava32077.m1 Manihot esculenta cassava32077.m1 I
cassava34286.m1 Manihot esculenta cassava34286.m1 N
cassava46299.m1 Manihot esculenta cassava46299.m1 I
Ca_02482 Cicer arietinum Ca_02482 N
Ca_03340 Cicer arietinum Ca_03340 I
Ca_08440 Cicer arietinum Ca_08440 I
Ca_14981 Cicer arietinum Ca_14981 N
Ca_18110 Cicer arietinum Ca_18110 N
Ca_19863 Cicer arietinum Ca_19863 N
Ca_24775 Cicer arietinum Ca_24775 I
chr2.CM0749.390.nc Lotus japonicus chr2.CM0749.390.nc I
chr6.CM0037.770.nc Lotus japonicus chr6.CM0037.770.nc I
Ciclev10008192m.g Citrus clementina Ciclev10008192m.g I
Ciclev10016289m.g Citrus clementina Ciclev10016289m.g I
Ciclev10020323m.g Citrus clementina Ciclev10020323m.g I
Ciclev10031900m.g Citrus clementina Ciclev10031900m.g I
Cla000223 Citrullus lanatus Cla000223 I
Cla013823 Citrullus lanatus Cla013823 I
Cla019007 Citrullus lanatus Cla019007 I
Cla020671 Citrullus lanatus Cla020671 I
Cucsa.132830 Cucumis sativus Cucsa.132830 I
Cucsa.283920 Cucumis sativus Cucsa.283920 I
Cucsa.350940 Cucumis sativus Cucsa.350940 I
Eucgr.C00360 Eucalyptus grandis Eucgr.C00360 I
Eucgr.C02592 Eucalyptus grandis Eucgr.C02592 I
Eucgr.G02351 Eucalyptus grandis Eucgr.G02351 I
evm.TU.contig_30708.1 Carica papaya evm.TU.contig_30708.1 I
evm.TU.supercontig_53.118 Carica papaya evm.TU.supercontig_53.118 I
evm.TU.supercontig_55.51 Carica papaya evm.TU.supercontig_55.51 N
evm.TU.supercontig_7.53 Carica papaya evm.TU.supercontig_7.53 I
e_gw1.173.38.1 Physcomitrella patens e_gw1.173.38.1 I
e_gw1.209.40.1 Physcomitrella patens e_gw1.209.40.1 D
F775_10096 Aegilops tauschii F775_10096 I
LRL3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8001435 I
fgenesh2_kg.2__1138__AT1G68810.1 Arabidopsis lyrata fgenesh2_kg.2__1138__AT1G68810.1 I
LRL1 Arabidopsis lyrata fgenesh2_kg.4__341__AT2G24260.1 I
BHLH32 Arabidopsis lyrata fgenesh2_kg.5__324__AT3G25710.1 I
LRL2 Arabidopsis lyrata fgenesh2_kg.7__1084__AT4G30980.1 I
gene10062-v1.0-hybrid Fragaria vesca gene10062-v1.0-hybrid I
gene29828-v1.0-hybrid Fragaria vesca gene29828-v1.0-hybrid I
GLYMA01G02930 Glycine max GLYMA01G02930 N
GLYMA01G22530 Glycine max GLYMA01G22530 I
GLYMA02G11190 Glycine max GLYMA02G11190 I
GLYMA02G36380 Glycine max GLYMA02G36380 I
GLYMA06G43560 Glycine max GLYMA06G43560 N
GLYMA07G32690 Glycine max GLYMA07G32690 I
GLYMA09G14380 Glycine max GLYMA09G14380 I
GLYMA10G34910 Glycine max GLYMA10G34910 I
GLYMA12G14400 Glycine max GLYMA12G14400 N
GLYMA15G33020 Glycine max GLYMA15G33020 I
GLYMA17G08300 Glycine max GLYMA17G08300 I
GLYMA17G19570 Glycine max GLYMA17G19570 I
GLYMA20G32660 Glycine max GLYMA20G32660 I
Gorai.008G186700 Gossypium raimondii Gorai.008G186700 I
Gorai.009G055200 Gossypium raimondii Gorai.009G055200 I
Gorai.009G163400 Gossypium raimondii Gorai.009G163400 I
Gorai.009G230000 Gossypium raimondii Gorai.009G230000 N
Gorai.012G124100 Gossypium raimondii Gorai.012G124100 N
Gorai.013G079600 Gossypium raimondii Gorai.013G079600 I
GRMZM2G016039 Zea mays GRMZM2G016039 I
GRMZM2G027563 Zea mays GRMZM2G027563 I
GRMZM2G043854 Zea mays GRMZM2G043854 I
GRMZM2G067654 Zea mays GRMZM2G067654 I
GRMZM2G107276 Zea mays GRMZM2G107276 I
GRMZM2G166642 Zea mays GRMZM2G166642 I
GRMZM2G176141 Zea mays GRMZM2G176141 N
GRMZM2G350165 Zea mays GRMZM2G350165 I
GRMZM2G526668 Zea mays GRMZM2G526668 I
GSMUA_Achr10G24090_001 Musa acuminata GSMUA_Achr10G24090_001 I
GSMUA_Achr10G30710_001 Musa acuminata GSMUA_Achr10G30710_001 I
GSMUA_Achr11G13440_001 Musa acuminata GSMUA_Achr11G13440_001 I
GSMUA_Achr1G21280_001 Musa acuminata GSMUA_Achr1G21280_001 I
GSMUA_Achr3G04630_001 Musa acuminata GSMUA_Achr3G04630_001 I
GSMUA_Achr4G01910_001 Musa acuminata GSMUA_Achr4G01910_001 I
GSMUA_Achr5G29390_001 Musa acuminata GSMUA_Achr5G29390_001 N
GSMUA_Achr6G30610_001 Musa acuminata GSMUA_Achr6G30610_001 I
GSMUA_Achr7G07280_001 Musa acuminata GSMUA_Achr7G07280_001 I
LjT46P06.140.nd Lotus japonicus LjT46P06.140.nd N
LPERR02G29460 Leersia perrieri LPERR02G29460 I
LPERR03G10060 Leersia perrieri LPERR03G10060 I
LPERR08G12910 Leersia perrieri LPERR08G12910 I
LPERR09G06880 Leersia perrieri LPERR09G06880 I
LPERR09G07210 Leersia perrieri LPERR09G07210 I
Lus10001885.g Linum usitatissimum Lus10001885.g I
Lus10013917.g Linum usitatissimum Lus10013917.g I
Lus10021711.g Linum usitatissimum Lus10021711.g I
Lus10021846.g Linum usitatissimum Lus10021846.g I
Lus10034271.g Linum usitatissimum Lus10034271.g I
Lus10035056.g Linum usitatissimum Lus10035056.g I
Lus10041493.g Linum usitatissimum Lus10041493.g I
MDP0000121522 Malus domestica MDP0000121522 I
MDP0000271420 Malus domestica MDP0000271420 I
MDP0000319726 Malus domestica MDP0000319726 I
MDP0000534784 Malus domestica MDP0000534784 I
MDP0000562627 Malus domestica MDP0000562627 N
MDP0000606021 Malus domestica MDP0000606021 I
mg025182m Mimulus guttatus mg025182m I
mgf001459m Mimulus guttatus mgf001459m I
mgf009435m Mimulus guttatus mgf009435m I
mgf014585m Mimulus guttatus mgf014585m I
mgf017635m Mimulus guttatus mgf017635m I
MLOC_12832 Hordeum vulgare MLOC_12832 N
MLOC_38567 Hordeum vulgare MLOC_38567 I
MLOC_64390 Hordeum vulgare MLOC_64390 I
MLOC_66385 Hordeum vulgare MLOC_66385 I
MTR_1g093750 Medicago truncatula MTR_1g093750 I
MTR_4g131160 Medicago truncatula MTR_4g131160 I
MTR_5g066080 Medicago truncatula MTR_5g066080 N
OB03G21490 Oryza brachyantha OB03G21490 I
OB06G14990 Oryza brachyantha OB06G14990 I
OBART03G11320 Oryza barthii OBART03G11320 I
OBART06G05420 Oryza barthii OBART06G05420 I
OBART08G15650 Oryza barthii OBART08G15650 I
OGLUM02G37030 Oryza glumaepatula OGLUM02G37030 I
OGLUM03G11280 Oryza glumaepatula OGLUM03G11280 I
OGLUM06G05610 Oryza glumaepatula OGLUM06G05610 I
OGLUM08G16400 Oryza glumaepatula OGLUM08G16400 I
OGLUM09G10750 Oryza glumaepatula OGLUM09G10750 I
OLONG_004075 Oryza longistaminata OLONG_004075 I
OLONG_011765 Oryza longistaminata OLONG_011765 N
OMERI02G33790 Oryza meridionalis OMERI02G33790 I
OMERI08G12930 Oryza meridionalis OMERI08G12930 I
OMERI09G07780 Oryza meridionalis OMERI09G07780 I
ONIVA02G37880 Oryza nivara ONIVA02G37880 I
ONIVA03G12280 Oryza nivara ONIVA03G12280 I
ONIVA06G06250 Oryza nivara ONIVA06G06250 I
ONIVA08G16750 Oryza nivara ONIVA08G16750 I
ONIVA09G09550 Oryza nivara ONIVA09G09550 I
ONIVA09G10010 Oryza nivara ONIVA09G10010 I
OPUNC08G13730 Oryza punctata OPUNC08G13730 I
orange1.1g012156m.g Citrus sinensis orange1.1g012156m.g I
orange1.1g022782m.g Citrus sinensis orange1.1g022782m.g I
orange1.1g024670m.g Citrus sinensis orange1.1g024670m.g I
orange1.1g026943m.g Citrus sinensis orange1.1g026943m.g I
orange1.1g037785m.g Citrus sinensis orange1.1g037785m.g I
ORGLA02G0311000 Oryza glaberrima ORGLA02G0311000 I
ORGLA08G0137400 Oryza glaberrima ORGLA08G0137400 I
ORUFI02G37320 Oryza rufipogon ORUFI02G37320 I
ORUFI03G11650 Oryza rufipogon ORUFI03G11650 I
ORUFI06G05560 Oryza rufipogon ORUFI06G05560 I
ORUFI08G17560 Oryza rufipogon ORUFI08G17560 I
ORUFI09G10670 Oryza rufipogon ORUFI09G10670 I
OS03G0260600 Oryza sativa OS03G0260600 I
OS06G0184000 Oryza sativa OS06G0184000 I
OS08G0432800 Oryza sativa OS08G0432800 I
OS09G0410700 Oryza sativa OS09G0410700 I
Pavir.Aa00205 Panicum virgatum Pavir.Aa00205 I
Pavir.Ab03158 Panicum virgatum Pavir.Ab03158 I
Pavir.Ba01821 Panicum virgatum Pavir.Ba01821 N
Pavir.Ba01914 Panicum virgatum Pavir.Ba01914 I
Pavir.Bb02117 Panicum virgatum Pavir.Bb02117 I
Pavir.Bb02155 Panicum virgatum Pavir.Bb02155 N
Pavir.Da02078 Panicum virgatum Pavir.Da02078 I
Pavir.Ea00157 Panicum virgatum Pavir.Ea00157 I
Pavir.Eb00095 Panicum virgatum Pavir.Eb00095 I
Pavir.Ib01099 Panicum virgatum Pavir.Ib01099 I
Pavir.J04712 Panicum virgatum Pavir.J04712 I
PDK_20s1551661g004 Phoenix dactylifera PDK_20s1551661g004 N
PGSC0003DMG400000824 Solanum tuberosum PGSC0003DMG400000824 I
PGSC0003DMG400007457 Solanum tuberosum PGSC0003DMG400007457 I
PGSC0003DMG400007827 Solanum tuberosum PGSC0003DMG400007827 I
PGSC0003DMG400011133 Solanum tuberosum PGSC0003DMG400011133 I
PGSC0003DMG400023577 Solanum tuberosum PGSC0003DMG400023577 N
PK01498.1 Cannabis sativa PK01498.1 N
PK07858.1 Cannabis sativa PK07858.1 D
PK14040.1 Cannabis sativa PK14040.1 I
PK20225.1 Cannabis sativa PK20225.1 D
Pm027715 Prunus mume Pm027715 I
Pm029004 Prunus mume Pm029004 I
POPTR_0008s11490 Populus trichocarpa POPTR_0008s11490 I
POPTR_0010s14010 Populus trichocarpa POPTR_0010s14010 I
POPTR_0013s12190 Populus trichocarpa POPTR_0013s12190 N
POPTR_0018s11800 Populus trichocarpa POPTR_0018s11800 I
POPTR_0019s11870 Populus trichocarpa POPTR_0019s11870 N
PRUPE_ppa005254mg Prunus persica PRUPE_ppa005254mg I
PRUPE_ppa019406mg Prunus persica PRUPE_ppa019406mg I
SapurV1A.0079s0530 Salix purpurea SapurV1A.0079s0530 I
SapurV1A.0100s0120 Salix purpurea SapurV1A.0100s0120 I
SapurV1A.0304s0070 Salix purpurea SapurV1A.0304s0070 I
SapurV1A.0347s0080 Salix purpurea SapurV1A.0347s0080 I
SapurV1A.0958s0180 Salix purpurea SapurV1A.0958s0180 N
SapurV1A.3056s0010 Salix purpurea SapurV1A.3056s0010 I
Sb01g040450 Sorghum bicolor Sb01g040450 I
Sb02g024460 Sorghum bicolor Sb02g024460 N
Sb02g024750 Sorghum bicolor Sb02g024750 I
Sb03g001730 Sorghum bicolor Sb03g001730 I
Sb04g035890 Sorghum bicolor Sb04g035890 I
Sb07g021170 Sorghum bicolor Sb07g021170 I
Sb10g005650 Sorghum bicolor Sb10g005650 I
SELMODRAFT_24890 Selaginella moellendorffii SELMODRAFT_24890 I
SELMODRAFT_24892 Selaginella moellendorffii SELMODRAFT_24892 I
SELMODRAFT_412681 Selaginella moellendorffii SELMODRAFT_412681 I
SELMODRAFT_417246 Selaginella moellendorffii SELMODRAFT_417246 I
SELMODRAFT_422025 Selaginella moellendorffii SELMODRAFT_422025 I
SELMODRAFT_444782 Selaginella moellendorffii SELMODRAFT_444782 I
SELMODRAFT_46532 Selaginella moellendorffii SELMODRAFT_46532 I
SELMODRAFT_56610 Selaginella moellendorffii SELMODRAFT_56610 I
Si013911m.g Setaria italica Si013911m.g I
Si017553m.g Setaria italica Si017553m.g I
Si029708m.g Setaria italica Si029708m.g I
Si030496m.g Setaria italica Si030496m.g N
Si039730m.g Setaria italica Si039730m.g I
Solyc04g006990.2 Solanum lycopersicum Solyc04g006990.2 I
Solyc04g014360.2 Solanum lycopersicum Solyc04g014360.2 N
Solyc04g078690.2 Solanum lycopersicum Solyc04g078690.2 I
Solyc05g009880.2 Solanum lycopersicum Solyc05g009880.2 I
Solyc07g005400.2 Solanum lycopersicum Solyc07g005400.2 I
Solyc12g010170.1 Solanum lycopersicum Solyc12g010170.1 I
TCM_000997 Theobroma cacao TCM_000997 N
TCM_011873 Theobroma cacao TCM_011873 I
TCM_029711 Theobroma cacao TCM_029711 I
TCM_037077 Theobroma cacao TCM_037077 I
Thhalv10000220m.g Eutrema salsugineum Thhalv10000220m.g I
Thhalv10004524m.g Eutrema salsugineum Thhalv10004524m.g I
Thhalv10014212m.g Eutrema salsugineum Thhalv10014212m.g I
Thhalv10018758m.g Eutrema salsugineum Thhalv10018758m.g I
Thhalv10025656m.g Eutrema salsugineum Thhalv10025656m.g I
TRAES3BF011300020CFD_g Triticum aestivum TRAES3BF011300020CFD_g I
Traes_4AS_DD16F89E7 Triticum aestivum Traes_4AS_DD16F89E7 I
Traes_4BL_A2B32FCEE Triticum aestivum Traes_4BL_A2B32FCEE I
Traes_4DL_7BD3165FB Triticum aestivum Traes_4DL_7BD3165FB I
Traes_5BL_CF90A7CAE Triticum aestivum Traes_5BL_CF90A7CAE N
Traes_6AL_FD6EC5EA9 Triticum aestivum Traes_6AL_FD6EC5EA9 I
TRIUR3_31897 Triticum urartu TRIUR3_31897 I
TRIUR3_33768 Triticum urartu TRIUR3_33768 I
VIT_01s0011g02940 Vitis vinifera VIT_01s0011g02940 I
VIT_08s0040g01240 Vitis vinifera VIT_08s0040g01240 I
VIT_11s0037g00040 Vitis vinifera VIT_11s0037g00040 I
VIT_14s0068g01580 Vitis vinifera VIT_14s0068g01580 I
VIT_18s0001g07410 Vitis vinifera VIT_18s0001g07410 N