SNAPOd2T00015974001 (Oikopleura dioica)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 SNAPOd2T00015974001 T230364_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VAX1
M03168_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX1_1 		0.711 0.500
VAX1
M05182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX 		0.711 0.500
VAX1
M05183_2.00 		Homo sapiens
BTMATKRN
NYMATKAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX 		0.711 0.500
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.682 0.348
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.682 0.348
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.682 0.348
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.682 0.348
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.682 0.348
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.682 0.348
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.682 0.348
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.682 0.348
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.682 0.348
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SNAPOd2T00015974001 Homeodomain 47 92

Links

Other Homeodomain family TFs
Other Oikopleura dioica TFs

1203 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGLB013830 Biomphalaria glabrata BGLB013830 N 0.000
D917_01243 Trichinella nativa D917_01243 N 0.000
D917_08464 Trichinella nativa D917_08464 N 0.000
DILT_0001977801 Diphyllobothrium latum DILT_0001977801 N 0.000
EFA77534.1 Polysphondylium pallidum EFA77534.1 N 0.000
GLYMA20G01570 Glycine max GLYMA20G01570 N 0.000
Gorai.002G115100 Gossypium raimondii Gorai.002G115100 I 0.000
GPLIN_000239300 Globodera pallida GPLIN_000239300 N 0.000
gw1.88.46.1 Fragilariopsis cylindrus gw1.88.46.1 N 0.000
HelroG167700 Helobdella robusta HelroG167700 N 0.000
LCUP018488 Lucilia cuprina LCUP018488 N 0.000
MCINX003696 Melitaea cinxia MCINX003696 N 0.000
MDP0000242568 Malus domestica MDP0000242568 I 0.000
MLOC_68913 Hordeum vulgare MLOC_68913 N 0.000
orange1.1g031906m.g Citrus sinensis orange1.1g031906m.g I 0.000
PDK_20s1781681g001 Phoenix dactylifera PDK_20s1781681g001 N 0.000
SVUK_0000827101 Strongylus vulgaris SVUK_0000827101 N 0.000
Traes_3DL_21C50DDF5 Triticum aestivum Traes_3DL_21C50DDF5 N 0.000
Traes_7AL_364A6E96F Triticum aestivum Traes_7AL_364A6E96F N 0.000
Traes_7BL_F45C15FA2 Triticum aestivum Traes_7BL_F45C15FA2 N 0.000
Traes_7DL_0CEFCB39D Triticum aestivum Traes_7DL_0CEFCB39D N 0.000
TRIUR3_17277 Triticum urartu TRIUR3_17277 N 0.000
TTAC_0000838901 Hydatigera taeniaeformis TTAC_0000838901 N 0.000