BXY_0668200 (Bursaphelenchus xylophilus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 BXY_0668200 T233271_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Pbx3
M09205_2.00 		Mus musculus
BBBTGATTGRYNDN
NHNRYCAATCAVVV		 Misc
Kulakovskiy et al.(2013)
PBX3_MOUSE.H11MO.0.A 		0.846 0.860
Pbx1
M00513_2.00 		Mus musculus
NNDKANNNN
NNNNTMHNN		 PBM
Berger et al.(2008)
Pbx1_3203 		0.846 0.842
PBX1
M05362_2.00 		Homo sapiens
NTGATKGAYR
YRTCMATCAN		 SELEX
Yin et al.(2017)
PBX1_eDBD_HT-SELEX 		0.846 0.842
PBX1
M05364_2.00 		Homo sapiens
DTGMTKGRYN
NRYCMAKCAH		 SELEX
Yin et al.(2017)
PBX1_FL_HT-SELEX 		0.846 0.842
PBX1
M02685_2.00 		Homo sapiens
WWTGATTGATND
HNATCAATCAWW		 SELEX
Mathelier et al.(2014)
MA0070.1 		0.846 0.842
PBX2
M08134_2.00 		Homo sapiens
NWGAKTGACABN
NVTGTCAMTCWN		 ChIP-seq
Mathelier et al.(2014)
MA1113.1 		0.846 0.842
PBX1
M09164_2.00 		Homo sapiens
DGABTGRCRG
CYGYCAVTCH		 Misc
Kulakovskiy et al.(2013)
PBX1_HUMAN.H11MO.0.A 		0.846 0.842
PBX2
M09165_2.00 		Homo sapiens
KRVHKTGATTGAWKN
NMWTCAATCAMDBYM		 Misc
Kulakovskiy et al.(2013)
PBX2_HUMAN.H11MO.0.C 		0.846 0.842
Pbx2
M09199_2.00 		Mus musculus
KRVHKTGATTGAWKN
NMWTCAATCAMDBYM		 Misc
Kulakovskiy et al.(2013)
PBX2_MOUSE.H11MO.0.C 		0.846 0.842
PBX1
M09561_2.00 		Homo sapiens
TGABTGACAGSC
GSCTGTCAVTCA		 Misc
Heinz et al.(2010)
MCF7-PBX1_GSE28007 		0.846 0.842
PBX1
M10748_2.00 		Homo sapiens
WTKATTRDT
AHYAATMAW		 Transfac
Matys et al.(2006)
V$PBX1_01 		0.846 0.842
PBX1
M10749_2.00 		Homo sapiens
DNHTTGATTGATKDB
VHMATCAATCAADNH		 Transfac
Matys et al.(2006)
V$PBX1_02 		0.846 0.842
PBX1
M10750_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_03 		0.846 0.842
PBX1
M10751_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_05 		0.846 0.842
PBX1
M10752_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_10 		0.846 0.842
PBX1
M10753_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_Q3 		0.846 0.842
PBX1
M05363_2.00 		Homo sapiens
DTGAKKGAYG
CRTCMMTCAH		 SELEX
Yin et al.(2017)
PBX1_eDBD_Methyl-HT-SELEX 		0.846 0.842
PBX1
M05365_2.00 		Homo sapiens
MRTCAATCMH
DKGATTGAYK		 SELEX
Yin et al.(2017)
PBX1_FL_Methyl-HT-SELEX 		0.846 0.842
pbx4
M02110_2.00 		Tetraodon nigroviridis
TTGAYGDV
BHCRTCAA		 PBM
Weirauch et al.(2014)
pTH6425 		0.846 0.825
exd
M06487_2.00 		Drosophila melanogaster
YRTCAAAN
NTTTGAYR		 B1H
Mathelier et al.(2014)
MA0222.1 		0.801 0.860
exd
M06243_2.00 		Drosophila melanogaster
YRTCAAAN
NTTTGAYR		 B1H
Zhu et al.(2011)
Exd_Cell_FBgn0000611 		0.801 0.860
exd
M06244_2.00 		Drosophila melanogaster
NWRNWYNAAA
TTTNRWNYWN		 B1H
Zhu et al.(2011)
exd_FlyReg_FBgn0000611 		0.801 0.860
exd
M06245_2.00 		Drosophila melanogaster
NDTGAYRW
WYRTCAHN		 B1H
Zhu et al.(2011)
exd_SOLEXA_2_FBgn0000611 		0.801 0.860
exd
M06246_2.00 		Drosophila melanogaster
NNDTGAYR
YRTCAHNN		 B1H
Zhu et al.(2011)
Exd_SOLEXA_FBgn0000611 		0.801 0.860
PBX4
M00277_2.00 		Homo sapiens
NNDDWHDNNN
NNNHDWHHNN		 PBM
Barrera et al.(2016)
PBX4_REF 		0.799 0.807
PBX4
M10649_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX4_01 		0.799 0.807
CBG10835
M01243_2.00 		Caenorhabditis briggsae
NNTKAYDNN
NNHRTMANN		 PBM
Lambert et al.(2019)
pTH11444 		0.703 0.596
PBX4
M00276_2.00 		Homo sapiens
NYTAATTADNN
NNHTAATTARN		 PBM
Barrera et al.(2016)
PBX4_R215Q 		0.661 0.789
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
BXY_0668200.1 Homeodomain 246 305

Links

Other Homeodomain family TFs
Other Bursaphelenchus xylophilus TFs

435 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29686.m000890 Ricinus communis 29686.m000890 I
29785.m000932 Ricinus communis 29785.m000932 I
29823.m000215 Ricinus communis 29823.m000215 I
AMTR_s00037p00177500 Amborella trichopoda AMTR_s00037p00177500 I
AMTR_s00038p00150140 Amborella trichopoda AMTR_s00038p00150140 I
Aquca_005_00025 Aquilegia coerulea Aquca_005_00025 I
Aquca_014_00928 Aquilegia coerulea Aquca_014_00928 I
MYB101 Arabidopsis thaliana AT2G32460 D
MYB97 Arabidopsis thaliana AT4G26930 I
ATMYB120 Arabidopsis thaliana AT5G55020 I
GAM1 Oryza indica BGIOSGA004670 I
BGIOSGA016822 Oryza indica BGIOSGA016822 I
BGIOSGA017818 Oryza indica BGIOSGA017818 I
Bo1g141040 Brassica oleracea Bo1g141040 I
Bo3g021790 Brassica oleracea Bo3g021790 I
Bo3g026690 Brassica oleracea Bo3g026690 I
Bo4g046000 Brassica oleracea Bo4g046000 I
Bo4g076940 Brassica oleracea Bo4g076940 I
Bo4g178040 Brassica oleracea Bo4g178040 I
Bo9g119060 Brassica oleracea Bo9g119060 I
Bostr.13129s0364 Boechera stricta Bostr.13129s0364 I
Bostr.23794s0867 Boechera stricta Bostr.23794s0867 I
Bostr.26833s0761 Boechera stricta Bostr.26833s0761 I
Bra002042 Brassica rapa Bra002042 I
Bra002938 Brassica rapa Bra002938 I
Bra005597 Brassica rapa Bra005597 I
Bra012038 Brassica rapa Bra012038 I
Bra021791 Brassica rapa Bra021791 I
Bra022888 Brassica rapa Bra022888 I
Bra028997 Brassica rapa Bra028997 I
Bra035547 Brassica rapa Bra035547 I
BRADI2G53010 Brachypodium distachyon BRADI2G53010 I
BRADI5G16707 Brachypodium distachyon BRADI5G16707 I
Cagra.0352s0034 Capsella grandiflora Cagra.0352s0034 I
Cagra.1629s0073 Capsella grandiflora Cagra.1629s0073 I
Cagra.2117s0052 Capsella grandiflora Cagra.2117s0052 I
Carubv10000715m.g Capsella rubella Carubv10000715m.g I
Carubv10025227m.g Capsella rubella Carubv10025227m.g I
Carubv10026070m.g Capsella rubella Carubv10026070m.g I
cassava11031.m1 Manihot esculenta cassava11031.m1 I
cassava1461.valid.m1 Manihot esculenta cassava1461.valid.m1 I
cassava30977.valid.m1 Manihot esculenta cassava30977.valid.m1 I
cassava40302.m1 Manihot esculenta cassava40302.m1 I
cassava44767.m1 Manihot esculenta cassava44767.m1 I
Ca_07119 Cicer arietinum Ca_07119 I
Ca_20081 Cicer arietinum Ca_20081 I
Ca_21739 Cicer arietinum Ca_21739 I
Ca_25013 Cicer arietinum Ca_25013 I
chr3.CM0005.370.nc Lotus japonicus chr3.CM0005.370.nc I
Ciclev10000756m.g Citrus clementina Ciclev10000756m.g I
Ciclev10010620m.g Citrus clementina Ciclev10010620m.g I
Ciclev10014958m.g Citrus clementina Ciclev10014958m.g I
Cla005406 Citrullus lanatus Cla005406 I
Cla007782 Citrullus lanatus Cla007782 I
Cla013880 Citrullus lanatus Cla013880 I
Cucsa.060080 Cucumis sativus Cucsa.060080 I
Cucsa.148580 Cucumis sativus Cucsa.148580 I
Cucsa.364400 Cucumis sativus Cucsa.364400 I
Eucgr.A01122 Eucalyptus grandis Eucgr.A01122 I
Eucgr.G03183 Eucalyptus grandis Eucgr.G03183 I
evm.TU.supercontig_33.151 Carica papaya evm.TU.supercontig_33.151 I
evm.TU.supercontig_34.210 Carica papaya evm.TU.supercontig_34.210 I
F775_08967 Aegilops tauschii F775_08967 I
F775_28392 Aegilops tauschii F775_28392 I
MYB101 Arabidopsis lyrata fgenesh2_kg.4__1233__AT2G32460.2 I
MYB33 Arabidopsis lyrata fgenesh2_kg.6__546__AT5G06100.3 I
MYB97 Arabidopsis lyrata fgenesh2_kg.7__1539__AT4G26930.1 I
GAM1_ORYSI Oryza sativa GAM1_ORYSI D
gene00431-v1.0-hybrid Fragaria vesca gene00431-v1.0-hybrid I
gene03321-v1.0-hybrid Fragaria vesca gene03321-v1.0-hybrid I
gene03323-v1.0-hybrid Fragaria vesca gene03323-v1.0-hybrid I
gene23946-v1.0-hybrid Fragaria vesca gene23946-v1.0-hybrid I
GLYMA04G15150 Glycine max GLYMA04G15150 I
GLYMA06G47000 Glycine max GLYMA06G47000 I
GLYMA08G42920 Glycine max GLYMA08G42920 I
GLYMA08G42955 Glycine max GLYMA08G42955 I
GLYMA12G31950 Glycine max GLYMA12G31950 I
GLYMA13G25716 Glycine max GLYMA13G25716 I
GLYMA13G38521 Glycine max GLYMA13G38521 I
GLYMA15G35860 Glycine max GLYMA15G35860 I
GLYMA18G10921 Glycine max GLYMA18G10921 I
Gorai.002G089900 Gossypium raimondii Gorai.002G089900 I
Gorai.006G121900 Gossypium raimondii Gorai.006G121900 I
Gorai.007G312700 Gossypium raimondii Gorai.007G312700 I
Gorai.009G301100 Gossypium raimondii Gorai.009G301100 I
Gorai.010G212500 Gossypium raimondii Gorai.010G212500 I
Gorai.012G022000 Gossypium raimondii Gorai.012G022000 I
Gorai.013G159200 Gossypium raimondii Gorai.013G159200 I
GRMZM2G139688 Zea mays GRMZM2G139688 I
GSMUA_Achr1G17150_001 Musa acuminata GSMUA_Achr1G17150_001 I
GSMUA_Achr4G23690_001 Musa acuminata GSMUA_Achr4G23690_001 I
GSMUA_AchrUn_randomG15100_001 Musa acuminata GSMUA_AchrUn_randomG15100_001 I
gw1.238.44.1 Physcomitrella patens gw1.238.44.1 I
gw1.66.160.1 Physcomitrella patens gw1.66.160.1 I
LjSGA_010688.1 Lotus japonicus LjSGA_010688.1 I
LjSGA_026914.2 Lotus japonicus LjSGA_026914.2 I
LjSGA_057622.2 Lotus japonicus LjSGA_057622.2 I
LjT02G13.10.nc Lotus japonicus LjT02G13.10.nc I
LPERR05G16930 Leersia perrieri LPERR05G16930 I
LPERR06G17110 Leersia perrieri LPERR06G17110 N
Lus10008685.g Linum usitatissimum Lus10008685.g I
Lus10021539.g Linum usitatissimum Lus10021539.g I
Lus10026142.g Linum usitatissimum Lus10026142.g I
Lus10026787.g Linum usitatissimum Lus10026787.g I
Lus10027189.g Linum usitatissimum Lus10027189.g I
Lus10035275.g Linum usitatissimum Lus10035275.g I
Lus10036103.g Linum usitatissimum Lus10036103.g I
Lus10040063.g Linum usitatissimum Lus10040063.g I
MDP0000147309 Malus domestica MDP0000147309 I
MDP0000151688 Malus domestica MDP0000151688 I
MDP0000175835 Malus domestica MDP0000175835 I
MDP0000176798 Malus domestica MDP0000176798 I
MDP0000179306 Malus domestica MDP0000179306 I
MDP0000308617 Malus domestica MDP0000308617 I
mgf002965m Mimulus guttatus mgf002965m I
mgf010934m Mimulus guttatus mgf010934m I
mgf019173m Mimulus guttatus mgf019173m I
mgf020500m Mimulus guttatus mgf020500m I
mgf025568m Mimulus guttatus mgf025568m I
MLOC_68698 Hordeum vulgare MLOC_68698 I
MTR_1g021230 Medicago truncatula MTR_1g021230 I
MTR_2g088170 Medicago truncatula MTR_2g088170 I
MTR_3g011610 Medicago truncatula MTR_3g011610 I
MTR_3g052430 Medicago truncatula MTR_3g052430 I
MTR_3g052450 Medicago truncatula MTR_3g052450 I
MTR_8g042410 Medicago truncatula MTR_8g042410 I
OB01G43550 Oryza brachyantha OB01G43550 I
OB04G26860 Oryza brachyantha OB04G26860 I
OBART01G34660 Oryza barthii OBART01G34660 I
OBART05G21120 Oryza barthii OBART05G21120 I
OBART06G20450 Oryza barthii OBART06G20450 I
OGLUM01G20920 Oryza glumaepatula OGLUM01G20920 I
OGLUM05G22330 Oryza glumaepatula OGLUM05G22330 I
OGLUM06G21530 Oryza glumaepatula OGLUM06G21530 I
OLONG_019401 Oryza longistaminata OLONG_019401 I
OLONG_020610 Oryza longistaminata OLONG_020610 I
OMERI01G31990 Oryza meridionalis OMERI01G31990 I
OMERI06G21070 Oryza meridionalis OMERI06G21070 I
ONIVA04G17990 Oryza nivara ONIVA04G17990 I
ONIVA06G24230 Oryza nivara ONIVA06G24230 I
OPUNC05G18800 Oryza punctata OPUNC05G18800 I
OPUNC06G18670 Oryza punctata OPUNC06G18670 I
orange1.1g011938m.g Citrus sinensis orange1.1g011938m.g I
orange1.1g039708m.g Citrus sinensis orange1.1g039708m.g I
orange1.1g046419m.g Citrus sinensis orange1.1g046419m.g I
ORGLA04G0169000 Oryza glaberrima ORGLA04G0169000 I
ORGLA06G0168900 Oryza glaberrima ORGLA06G0168900 I
ORUFI04G21320 Oryza rufipogon ORUFI04G21320 I
ORUFI05G22370 Oryza rufipogon ORUFI05G22370 I
ORUFI06G21880 Oryza rufipogon ORUFI06G21880 I
GAMYB Oryza sativa OS01G0812000 I
OS05G0490600 Oryza sativa OS05G0490600 I
OS06G0605750 Oryza sativa OS06G0605750 N
Pavir.Da00077 Panicum virgatum Pavir.Da00077 I
Pavir.Da00534 Panicum virgatum Pavir.Da00534 I
Pavir.Db00593 Panicum virgatum Pavir.Db00593 I
Pavir.Ea03206 Panicum virgatum Pavir.Ea03206 I
Pavir.Eb03517 Panicum virgatum Pavir.Eb03517 I
PDK_20s1831811g001 Phoenix dactylifera PDK_20s1831811g001 I
PGSC0003DMG400005918 Solanum tuberosum PGSC0003DMG400005918 I
PGSC0003DMG400013897 Solanum tuberosum PGSC0003DMG400013897 I
PGSC0003DMG400022689 Solanum tuberosum PGSC0003DMG400022689 I
PGSC0003DMG400028949 Solanum tuberosum PGSC0003DMG400028949 I
PK15478.1 Cannabis sativa PK15478.1 I
Pm011812 Prunus mume Pm011812 I
Pm015094 Prunus mume Pm015094 I
Pm016605 Prunus mume Pm016605 I
POPTR_0001s07330 Populus trichocarpa POPTR_0001s07330 I
MYB101 Populus trichocarpa POPTR_0002s21300 I
POPTR_0003s18900 Populus trichocarpa POPTR_0003s18900 I
POPTR_0009s02380 Populus trichocarpa POPTR_0009s02380 I
PRUPE_ppa003628mg Prunus persica PRUPE_ppa003628mg I
PRUPE_ppa017451mg Prunus persica PRUPE_ppa017451mg I
PRUPE_ppa019943mg Prunus persica PRUPE_ppa019943mg I
PRUPE_ppa022465mg Prunus persica PRUPE_ppa022465mg I
myb.Ph3 Petunia x hybrida Q02994_PETHY D
Gam1 Hordeum vulgare Q96464_HORVU D
Q9FR42_TOBAC Nicotiana tabacum Q9FR42_TOBAC D
SapurV1A.0008s0050 Salix purpurea SapurV1A.0008s0050 I
SapurV1A.0014s1240 Salix purpurea SapurV1A.0014s1240 I
SapurV1A.0369s0230 Salix purpurea SapurV1A.0369s0230 I
SapurV1A.0537s0200 Salix purpurea SapurV1A.0537s0200 I
SapurV1A.1897s0070 Salix purpurea SapurV1A.1897s0070 I
SapurV1A.1951s0020 Salix purpurea SapurV1A.1951s0020 I
SapurV1A.2567s0040 Salix purpurea SapurV1A.2567s0040 I
Sb03g037680 Sorghum bicolor Sb03g037680 I
Sb06g023620 Sorghum bicolor Sb06g023620 I
Sb10g023665 Sorghum bicolor Sb10g023665 I
Sb10g027280 Sorghum bicolor Sb10g027280 I
SELMODRAFT_117411 Selaginella moellendorffii SELMODRAFT_117411 I
SELMODRAFT_128781 Selaginella moellendorffii SELMODRAFT_128781 I
SELMODRAFT_81112 Selaginella moellendorffii SELMODRAFT_81112 I
SELMODRAFT_84369 Selaginella moellendorffii SELMODRAFT_84369 I
Si000907m.g Setaria italica Si000907m.g I
Si006555m.g Setaria italica Si006555m.g I
Si007070m.g Setaria italica Si007070m.g I
Solyc01g009070.2 Solanum lycopersicum Solyc01g009070.2 I
Solyc06g073640.2 Solanum lycopersicum Solyc06g073640.2 I
Solyc07g052300.2 Solanum lycopersicum Solyc07g052300.2 I
TCM_011907 Theobroma cacao TCM_011907 I
TCM_030853 Theobroma cacao TCM_030853 I
TCM_041010 Theobroma cacao TCM_041010 I
TCM_044611 Theobroma cacao TCM_044611 I
Thhalv10013018m.g Eutrema salsugineum Thhalv10013018m.g I
Thhalv10013329m.g Eutrema salsugineum Thhalv10013329m.g I
Thhalv10016567m.g Eutrema salsugineum Thhalv10016567m.g I
Thhalv10025350m.g Eutrema salsugineum Thhalv10025350m.g I
TRAES3BF027700010CFD_g Triticum aestivum TRAES3BF027700010CFD_g I
Traes_1BL_CF98E922B Triticum aestivum Traes_1BL_CF98E922B I
Traes_2AL_41B71F83C Triticum aestivum Traes_2AL_41B71F83C I
Traes_2BL_79F1B50DF Triticum aestivum Traes_2BL_79F1B50DF I
Traes_2DL_5A0300CE0 Triticum aestivum Traes_2DL_5A0300CE0 I
TRIUR3_15006 Triticum urartu TRIUR3_15006 I
TRIUR3_17275 Triticum urartu TRIUR3_17275 I
TRIUR3_27104 Triticum urartu TRIUR3_27104 I
VIT_06s0009g02480 Vitis vinifera VIT_06s0009g02480 I
MYB101 Vitis vinifera VIT_12s0059g00700 I
VIT_13s0067g01630 Vitis vinifera VIT_13s0067g01630 I
VIT_19s0090g00590 Vitis vinifera VIT_19s0090g00590 I