MhA1_Contig1493.frz3.gene10 (Meloidogyne hapla)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 MhA1_Contig1493.frz3.gene10 T235123_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Six2
M00425_2.00 		Mus musculus
NNAYMYNN
NNRKRTNN		 PBM
Berger et al.(2008)
Six2_2307 		0.732 0.519
Six1
M00512_2.00 		Mus musculus
NNDATMYNNN
NNNRKATHNN		 PBM
Berger et al.(2008)
Six1_0935 		0.732 0.519
SIX1
M05094_2.00 		Homo sapiens
NNYGATACVB
VBGTATCRNN		 SELEX
Yin et al.(2017)
SIX1_eDBD_HT-SELEX 		0.732 0.519
SIX1
M05096_2.00 		Homo sapiens
NNYGATAYVB
VBRTATCRNN		 SELEX
Yin et al.(2017)
SIX1_FL_HT-SELEX 		0.732 0.519
SIX2
M05285_2.00 		Homo sapiens
NNYGATACSB
VSGTATCRNN		 SELEX
Yin et al.(2017)
SIX2_eDBD_HT-SELEX 		0.732 0.519
SIX2
M05287_2.00 		Homo sapiens
NSGTRWCRYN
NRYGWYACSN		 SELEX
Yin et al.(2017)
SIX2_FL_HT-SELEX 		0.732 0.519
SIX1
M08130_2.00 		Homo sapiens
GWAACCTGANM
KNTCAGGTTWC		 ChIP-seq
Mathelier et al.(2014)
MA1118.1 		0.732 0.519
SIX2
M08133_2.00 		Homo sapiens
NNNTGWAACCTGAKMH
DKMTCAGGTTWCANNN		 ChIP-seq
Mathelier et al.(2014)
MA1119.1 		0.732 0.519
SIX1
M09142_2.00 		Homo sapiens
DGWAAYHTGABMYN
NRKVTCADRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX1_HUMAN.H11MO.0.A 		0.732 0.519
SIX2
M09157_2.00 		Homo sapiens
DGWAAYHHGABMH
DKVTCDDRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX2_HUMAN.H11MO.0.A 		0.732 0.519
Six2
M09185_2.00 		Mus musculus
DGWAAYHYRABMYB
VRKVTYRDRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX2_MOUSE.H11MO.0.A 		0.732 0.519
Six1
M09579_2.00 		Mus musculus
GWAAYHTGABMH
DKVTCADRTTWC		 Misc
Heinz et al.(2010)
Myoblast-Six1_GSE20150 		0.732 0.519
SIX1
M10684_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX1_Q3_01 		0.732 0.519
SIX1
M10685_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX1_Q3 		0.732 0.519
SIX1
M05095_2.00 		Homo sapiens
NNYGATABNB
VNVTATCRNN		 SELEX
Yin et al.(2017)
SIX1_eDBD_Methyl-HT-SELEX 		0.732 0.519
SIX1
M05097_2.00 		Homo sapiens
NNYGATAYSB
VSRTATCRNN		 SELEX
Yin et al.(2017)
SIX1_FL_Methyl-HT-SELEX 		0.732 0.519
SIX2
M05286_2.00 		Homo sapiens
NBRTATCRNN
NNYGATAYVN		 SELEX
Yin et al.(2017)
SIX2_eDBD_Methyl-HT-SELEX 		0.732 0.519
SIX2
M05288_2.00 		Homo sapiens
VBRTAWCRNN
NNYGWTAYVB		 SELEX
Yin et al.(2017)
SIX2_FL_Methyl-HT-SELEX 		0.732 0.519
so
M02117_2.00 		Drosophila melanogaster
NDATMYNNN
NNNRKATHN		 PBM
Weirauch et al.(2014)
pTH5690 		0.732 0.500
so
M03800_2.00 		Drosophila melanogaster
NYGATAYB
VRTATCRN		 SELEX
Nitta et al.(2015)
so_1 		0.732 0.500
so
M03801_2.00 		Drosophila melanogaster
YKATAYNNNYGATAY
RTATCRNNNRTATMR		 SELEX
Nitta et al.(2015)
so_2 		0.732 0.500
so
M03802_2.00 		Drosophila melanogaster
YGATACGTATCR
YGATACGTATCR		 SELEX
Nitta et al.(2015)
so_3 		0.732 0.500
so
M03803_2.00 		Drosophila melanogaster
RTATCRYGATAC
GTATCRYGATAY		 SELEX
Nitta et al.(2015)
so_4 		0.732 0.500
so
M06497_2.00 		Drosophila melanogaster
TGATAC
GTATCA		 B1H
Mathelier et al.(2014)
MA0246.1 		0.732 0.500
so
M06268_2.00 		Drosophila melanogaster
NRTGATA
TATCAYN		 B1H
Zhu et al.(2011)
So_Cell_FBgn0003460 		0.732 0.500
so
M06269_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
So_SOLEXA_FBgn0003460 		0.732 0.500
Six4
M00461_2.00 		Mus musculus
NNKABMHNN
NNDKVTMNN		 PBM
Berger et al.(2008)
Six4_2860 		0.657 0.556
SIX4
M04939_2.00 		Homo sapiens
NVYGATACVB
VBGTATCRBN		 SELEX
Yin et al.(2017)
SIX4_eDBD_HT-SELEX 		0.657 0.556
Six4
M09198_2.00 		Mus musculus
DGDAABHNSASNNN
NNNSTSNDVTTHCH		 Misc
Kulakovskiy et al.(2013)
SIX4_MOUSE.H11MO.0.C 		0.657 0.556
SIX4
M10646_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX4_Q3 		0.657 0.556
SIX4
M04940_2.00 		Homo sapiens
NBGTAWCRHN
NDYGWTACVN		 SELEX
Yin et al.(2017)
SIX4_eDBD_Methyl-HT-SELEX 		0.657 0.556
Six4
M00563_2.00 		Drosophila melanogaster
NNDANMHNN
NNDKNTHNN		 PBM
Busser et al.(2012a)
Six4 		0.656 0.519
Six4
M06530_2.00 		Drosophila melanogaster
TGABAC
GTVTCA		 B1H
Mathelier et al.(2014)
MA0204.1 		0.656 0.519
Six4
M06334_2.00 		Drosophila melanogaster
WDDTGABAC
GTVTCAHHW		 B1H
Zhu et al.(2011)
Six4_Cell_FBgn0027364 		0.656 0.519
Six4
M06335_2.00 		Drosophila melanogaster
NTGAKACB
VGTMTCAN		 B1H
Zhu et al.(2011)
Six4_SOLEXA_2_FBgn0027364 		0.656 0.519
Six4
M06336_2.00 		Drosophila melanogaster
NNNTGABA
TVTCANNN		 B1H
Zhu et al.(2011)
Six4_SOLEXA_FBgn0027364 		0.656 0.519
SIX5
M08208_2.00 		Homo sapiens
GARWTGTAGT
ACTACAWYTC		 ChIP-seq
Contrino et al.(2012)
Mv121 		0.656 0.500
SIX5
M08209_2.00 		Homo sapiens
GGAGTTGT
ACAACTCC		 ChIP-seq
Contrino et al.(2012)
Mv123 		0.656 0.500
SIX5
M10738_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX5_01 		0.656 0.500
SIX5
M10739_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX5_02 		0.656 0.500
ceh-34
M00672_2.00 		Caenorhabditis elegans
NNNRDAWNNN
NNNWTHYNNN		 PBM
Narasimhan et al.(2015)
pTH9708 		0.630 0.556
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MhA1_Contig1493.frz3.gene10 Homeodomain 161 214

Links

Other Homeodomain family TFs
Other Meloidogyne hapla TFs

532 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29790.m000843 Ricinus communis 29790.m000843 I
30138.m003913 Ricinus communis 30138.m003913 I
AMTR_s00006p00250310 Amborella trichopoda AMTR_s00006p00250310 I
Aquca_002_00952 Aquilegia coerulea Aquca_002_00952 I
Aquca_006_00387 Aquilegia coerulea Aquca_006_00387 I
BIM2 Arabidopsis thaliana AT1G69010 D
BIM1 Arabidopsis thaliana AT5G08130 D
ALC Arabidopsis thaliana AT5G67110 I
BGIOSGA005697 Oryza indica BGIOSGA005697 I
BGIOSGA022375 Oryza indica BGIOSGA022375 I
BGIOSGA028888 Oryza indica BGIOSGA028888 I
BGIOSGA030958 Oryza indica BGIOSGA030958 I
Bo2g062560 Brassica oleracea Bo2g062560 I
Bo2g161110 Brassica oleracea Bo2g161110 I
Bo3g004690 Brassica oleracea Bo3g004690 I
Bo5g020460 Brassica oleracea Bo5g020460 I
Bo6g108530 Brassica oleracea Bo6g108530 I
Bo9g174770 Brassica oleracea Bo9g174770 I
Bostr.0568s0133 Boechera stricta Bostr.0568s0133 I
Bostr.10273s0468 Boechera stricta Bostr.10273s0468 I
Bostr.13129s0152 Boechera stricta Bostr.13129s0152 I
Bra004355 Brassica rapa Bra004355 I
Bra005969 Brassica rapa Bra005969 I
Bra009322 Brassica rapa Bra009322 I
Bra012133 Brassica rapa Bra012133 I
Bra029354 Brassica rapa Bra029354 I
Bra038332 Brassica rapa Bra038332 I
BRADI3G38970 Brachypodium distachyon BRADI3G38970 I
BRADI4G32967 Brachypodium distachyon BRADI4G32967 I
Cagra.1157s0023 Capsella grandiflora Cagra.1157s0023 I
Cagra.1365s0019 Capsella grandiflora Cagra.1365s0019 I
Carubv10000655m.g Capsella rubella Carubv10000655m.g I
Carubv10020679m.g Capsella rubella Carubv10020679m.g I
Carubv10028570m.g Capsella rubella Carubv10028570m.g I
cassava14.valid.m1 Manihot esculenta cassava14.valid.m1 I
cassava15.valid.m1 Manihot esculenta cassava15.valid.m1 I
cassava29314.valid.m1 Manihot esculenta cassava29314.valid.m1 I
cassava29318.valid.m1 Manihot esculenta cassava29318.valid.m1 I
cassava43370.valid.m1 Manihot esculenta cassava43370.valid.m1 I
cassava43379.valid.m1 Manihot esculenta cassava43379.valid.m1 I
Ca_19269 Cicer arietinum Ca_19269 I
Ca_22043 Cicer arietinum Ca_22043 I
Ciclev10012135m.g Citrus clementina Ciclev10012135m.g I
Ciclev10020248m.g Citrus clementina Ciclev10020248m.g I
Ciclev10032020m.g Citrus clementina Ciclev10032020m.g I
Cla018818 Citrullus lanatus Cla018818 I
Cla022382 Citrullus lanatus Cla022382 I
Cucsa.113490 Cucumis sativus Cucsa.113490 I
Cucsa.174600 Cucumis sativus Cucsa.174600 I
Cucsa.198520 Cucumis sativus Cucsa.198520 I
Cucsa.328060 Cucumis sativus Cucsa.328060 I
estExt_fgenesh1_pg.C_2110039 Physcomitrella patens estExt_fgenesh1_pg.C_2110039 I
Eucgr.B00645 Eucalyptus grandis Eucgr.B00645 I
Eucgr.B03113 Eucalyptus grandis Eucgr.B03113 I
Eucgr.I02069 Eucalyptus grandis Eucgr.I02069 I
evm.TU.supercontig_289.6 Carica papaya evm.TU.supercontig_289.6 I
evm.TU.supercontig_3.225 Carica papaya evm.TU.supercontig_3.225 I
F775_23096 Aegilops tauschii F775_23096 I
fgenesh1_pg.scaffold_37000071 Physcomitrella patens fgenesh1_pg.scaffold_37000071 D
BIM2 Arabidopsis lyrata fgenesh2_kg.2__1159__AT1G69010.1 I
ALC Arabidopsis lyrata fgenesh2_kg.8__2705__AT5G67110.1 I
gene04534-v1.0-hybrid Fragaria vesca gene04534-v1.0-hybrid I
gene09125-v1.0-hybrid Fragaria vesca gene09125-v1.0-hybrid I
gene26139-v1.0-hybrid Fragaria vesca gene26139-v1.0-hybrid I
GLYMA01G09010 Glycine max GLYMA01G09010 I
GLYMA02G13670 Glycine max GLYMA02G13670 I
GLYMA05G07490 Glycine max GLYMA05G07490 I
GLYMA08G28010 Glycine max GLYMA08G28010 I
GLYMA17G08980 Glycine max GLYMA17G08980 I
GLYMA18G51080 Glycine max GLYMA18G51080 I
Gorai.001G197500 Gossypium raimondii Gorai.001G197500 I
Gorai.006G269200 Gossypium raimondii Gorai.006G269200 I
Gorai.007G040600 Gossypium raimondii Gorai.007G040600 I
Gorai.009G327300 Gossypium raimondii Gorai.009G327300 I
Gorai.013G098000 Gossypium raimondii Gorai.013G098000 I
GRMZM2G009478 Zea mays GRMZM2G009478 I
GRMZM2G017349 Zea mays GRMZM2G017349 I
GRMZM2G089501 Zea mays GRMZM2G089501 I
GRMZM2G172795 Zea mays GRMZM2G172795 I
GRMZM2G317450 Zea mays GRMZM2G317450 I
GSMUA_Achr2G05450_001 Musa acuminata GSMUA_Achr2G05450_001 I
GSMUA_Achr3G10640_001 Musa acuminata GSMUA_Achr3G10640_001 I
GSMUA_Achr4G19530_001 Musa acuminata GSMUA_Achr4G19530_001 I
GSMUA_Achr9G19110_001 Musa acuminata GSMUA_Achr9G19110_001 I
GSMUA_Achr9G28050_001 Musa acuminata GSMUA_Achr9G28050_001 I
gw1.90.123.1 Physcomitrella patens gw1.90.123.1 I
LPERR04G17400 Leersia perrieri LPERR04G17400 I
LPERR06G03910 Leersia perrieri LPERR06G03910 I
LPERR08G15680 Leersia perrieri LPERR08G15680 I
LPERR09G10080 Leersia perrieri LPERR09G10080 I
Lus10004630.g Linum usitatissimum Lus10004630.g I
Lus10007974.g Linum usitatissimum Lus10007974.g I
Lus10013502.g Linum usitatissimum Lus10013502.g I
Lus10026684.g Linum usitatissimum Lus10026684.g I
Lus10034358.g Linum usitatissimum Lus10034358.g I
MDP0000261293 Malus domestica MDP0000261293 I
mgf001137m Mimulus guttatus mgf001137m I
mgf005849m Mimulus guttatus mgf005849m I
mgf011829m Mimulus guttatus mgf011829m I
mgf013208m Mimulus guttatus mgf013208m I
MTR_1g019240 Medicago truncatula MTR_1g019240 I
MTR_4g110040 Medicago truncatula MTR_4g110040 I
MTR_5g048350 Medicago truncatula MTR_5g048350 I
MTR_7g017320 Medicago truncatula MTR_7g017320 I
OB02G38020 Oryza brachyantha OB02G38020 I
OB08G25940 Oryza brachyantha OB08G25940 I
OBART06G04330 Oryza barthii OBART06G04330 I
OBART09G13850 Oryza barthii OBART09G13850 I
OGLUM06G04430 Oryza glumaepatula OGLUM06G04430 I
OGLUM08G19830 Oryza glumaepatula OGLUM08G19830 I
OGLUM09G14430 Oryza glumaepatula OGLUM09G14430 I
OLONG_003583 Oryza longistaminata OLONG_003583 I
OLONG_020060 Oryza longistaminata OLONG_020060 I
OMERI06G05430 Oryza meridionalis OMERI06G05430 I
OMERI09G10560 Oryza meridionalis OMERI09G10560 I
ONIVA06G05510 Oryza nivara ONIVA06G05510 I
ONIVA08G20800 Oryza nivara ONIVA08G20800 I
ONIVA09G14370 Oryza nivara ONIVA09G14370 I
OPUNC08G16820 Oryza punctata OPUNC08G16820 I
OPUNC09G12310 Oryza punctata OPUNC09G12310 I
orange1.1g019485m.g Citrus sinensis orange1.1g019485m.g I
orange1.1g019960m.g Citrus sinensis orange1.1g019960m.g I
orange1.1g038451m.g Citrus sinensis orange1.1g038451m.g I
ORGLA02G0264700 Oryza glaberrima ORGLA02G0264700 I
ORGLA06G0039900 Oryza glaberrima ORGLA06G0039900 I
ORGLA06G0286200 Oryza glaberrima ORGLA06G0286200 I
ORGLA08G0164200 Oryza glaberrima ORGLA08G0164200 I
ORGLA09G0105800 Oryza glaberrima ORGLA09G0105800 I
ORUFI06G04330 Oryza rufipogon ORUFI06G04330 I
ORUFI08G21030 Oryza rufipogon ORUFI08G21030 I
ORUFI09G14830 Oryza rufipogon ORUFI09G14830 I
OS02G0726700 Oryza sativa OS02G0726700 I
OS08G0490000 Oryza sativa OS08G0490000 I
OS09G0475400 Oryza sativa OS09G0475400 I
Pavir.Aa00700 Panicum virgatum Pavir.Aa00700 I
Pavir.Ab03017 Panicum virgatum Pavir.Ab03017 I
Pavir.Fb01833 Panicum virgatum Pavir.Fb01833 I
Pavir.J04606 Panicum virgatum Pavir.J04606 I
Pavir.J15575 Panicum virgatum Pavir.J15575 I
Pavir.J38250 Panicum virgatum Pavir.J38250 I
Pavir.J38910 Panicum virgatum Pavir.J38910 I
PGSC0003DMG400001919 Solanum tuberosum PGSC0003DMG400001919 I
PGSC0003DMG400019654 Solanum tuberosum PGSC0003DMG400019654 I
PGSC0003DMG401007955 Solanum tuberosum PGSC0003DMG401007955 I
PK00238.1 Cannabis sativa PK00238.1 I
PK01364.1 Cannabis sativa PK01364.1 I
PK10562.1 Cannabis sativa PK10562.1 I
POPTR_0004s11180 Populus trichocarpa POPTR_0004s11180 I
POPTR_0008s11120 Populus trichocarpa POPTR_0008s11120 I
POPTR_0010s14740 Populus trichocarpa POPTR_0010s14740 I
POPTR_0012s06650 Populus trichocarpa POPTR_0012s06650 I
POPTR_0015s03550 Populus trichocarpa POPTR_0015s03550 I
POPTR_0017s13610 Populus trichocarpa POPTR_0017s13610 I
PRUPE_ppa003436mg Prunus persica PRUPE_ppa003436mg I
PRUPE_ppa008387mg Prunus persica PRUPE_ppa008387mg I
PRUPE_ppa008856mg Prunus persica PRUPE_ppa008856mg I
SapurV1A.0060s0510 Salix purpurea SapurV1A.0060s0510 I
SapurV1A.0084s0570 Salix purpurea SapurV1A.0084s0570 I
SapurV1A.0178s0150 Salix purpurea SapurV1A.0178s0150 I
SapurV1A.0274s0040 Salix purpurea SapurV1A.0274s0040 I
SapurV1A.0868s0010 Salix purpurea SapurV1A.0868s0010 I
SapurV1A.2517s0020 Salix purpurea SapurV1A.2517s0020 I
Sb02g027460 Sorghum bicolor Sb02g027460 I
Sb04g029270 Sorghum bicolor Sb04g029270 I
Sb06g025040 Sorghum bicolor Sb06g025040 I
Sb06g025060 Sorghum bicolor Sb06g025060 I
Sb07g028860 Sorghum bicolor Sb07g028860 I
Sb10g004500 Sorghum bicolor Sb10g004500 I
BIM1 Arabidopsis lyrata scaffold_600819.1 I
SELMODRAFT_451475 Selaginella moellendorffii SELMODRAFT_451475 I
SELMODRAFT_451477 Selaginella moellendorffii SELMODRAFT_451477 I
Si000845m.g Setaria italica Si000845m.g I
Si012401m.g Setaria italica Si012401m.g I
Si013622m.g Setaria italica Si013622m.g I
Si016505m.g Setaria italica Si016505m.g I
Si029604m.g Setaria italica Si029604m.g I
Solyc03g114720.2 Solanum lycopersicum Solyc03g114720.2 I
Solyc04g005280.2 Solanum lycopersicum Solyc04g005280.2 I
Solyc05g011810.2 Solanum lycopersicum Solyc05g011810.2 I
Solyc06g069370.2 Solanum lycopersicum Solyc06g069370.2 I
TCM_011433 Theobroma cacao TCM_011433 I
TCM_014392 Theobroma cacao TCM_014392 I
TCM_019015 Theobroma cacao TCM_019015 I
Thhalv10004889m.g Eutrema salsugineum Thhalv10004889m.g I
Thhalv10013181m.g Eutrema salsugineum Thhalv10013181m.g I
Thhalv10018889m.g Eutrema salsugineum Thhalv10018889m.g I
Thhalv10027863m.g Eutrema salsugineum Thhalv10027863m.g I
Traes_5AL_0D4BDDDCD Triticum aestivum Traes_5AL_0D4BDDDCD I
Traes_5BL_AAC9C7238 Triticum aestivum Traes_5BL_AAC9C7238 I
Traes_5DL_E96693018 Triticum aestivum Traes_5DL_E96693018 I
BIM2 Vitis vinifera VIT_01s0010g00540 I
BIM3 Vitis vinifera VIT_14s0083g00930 I
BIM1 Vitis vinifera VIT_17s0000g04790 I