scaffold405-EXSNAP2012.17 (Pristionchus exspectatus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 scaffold405-EXSNAP2012.17 T235984_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Pbx1
M00513_2.00 		Mus musculus
NNDKANNNN
NNNNTMHNN		 PBM
Berger et al.(2008)
Pbx1_3203 		0.848 0.789
PBX1
M05362_2.00 		Homo sapiens
NTGATKGAYR
YRTCMATCAN		 SELEX
Yin et al.(2017)
PBX1_eDBD_HT-SELEX 		0.848 0.789
PBX1
M05364_2.00 		Homo sapiens
DTGMTKGRYN
NRYCMAKCAH		 SELEX
Yin et al.(2017)
PBX1_FL_HT-SELEX 		0.848 0.789
PBX1
M02685_2.00 		Homo sapiens
WWTGATTGATND
HNATCAATCAWW		 SELEX
Mathelier et al.(2014)
MA0070.1 		0.848 0.789
PBX1
M09164_2.00 		Homo sapiens
DGABTGRCRG
CYGYCAVTCH		 Misc
Kulakovskiy et al.(2013)
PBX1_HUMAN.H11MO.0.A 		0.848 0.789
Pbx3
M09205_2.00 		Mus musculus
BBBTGATTGRYNDN
NHNRYCAATCAVVV		 Misc
Kulakovskiy et al.(2013)
PBX3_MOUSE.H11MO.0.A 		0.848 0.789
PBX1
M09561_2.00 		Homo sapiens
TGABTGACAGSC
GSCTGTCAVTCA		 Misc
Heinz et al.(2010)
MCF7-PBX1_GSE28007 		0.848 0.789
PBX1
M10748_2.00 		Homo sapiens
WTKATTRDT
AHYAATMAW		 Transfac
Matys et al.(2006)
V$PBX1_01 		0.848 0.789
PBX1
M10749_2.00 		Homo sapiens
DNHTTGATTGATKDB
VHMATCAATCAADNH		 Transfac
Matys et al.(2006)
V$PBX1_02 		0.848 0.789
PBX1
M10750_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_03 		0.848 0.789
PBX1
M10751_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_05 		0.848 0.789
PBX1
M10752_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_10 		0.848 0.789
PBX1
M10753_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX1_Q3 		0.848 0.789
PBX1
M05363_2.00 		Homo sapiens
DTGAKKGAYG
CRTCMMTCAH		 SELEX
Yin et al.(2017)
PBX1_eDBD_Methyl-HT-SELEX 		0.848 0.789
PBX1
M05365_2.00 		Homo sapiens
MRTCAATCMH
DKGATTGAYK		 SELEX
Yin et al.(2017)
PBX1_FL_Methyl-HT-SELEX 		0.848 0.789
pbx4
M02110_2.00 		Tetraodon nigroviridis
TTGAYGDV
BHCRTCAA		 PBM
Weirauch et al.(2014)
pTH6425 		0.848 0.772
PBX2
M08134_2.00 		Homo sapiens
NWGAKTGACABN
NVTGTCAMTCWN		 ChIP-seq
Mathelier et al.(2014)
MA1113.1 		0.848 0.772
PBX2
M09165_2.00 		Homo sapiens
KRVHKTGATTGAWKN
NMWTCAATCAMDBYM		 Misc
Kulakovskiy et al.(2013)
PBX2_HUMAN.H11MO.0.C 		0.848 0.772
Pbx2
M09199_2.00 		Mus musculus
KRVHKTGATTGAWKN
NMWTCAATCAMDBYM		 Misc
Kulakovskiy et al.(2013)
PBX2_MOUSE.H11MO.0.C 		0.848 0.772
exd
M06487_2.00 		Drosophila melanogaster
YRTCAAAN
NTTTGAYR		 B1H
Mathelier et al.(2014)
MA0222.1 		0.803 0.789
exd
M06243_2.00 		Drosophila melanogaster
YRTCAAAN
NTTTGAYR		 B1H
Zhu et al.(2011)
Exd_Cell_FBgn0000611 		0.803 0.789
exd
M06244_2.00 		Drosophila melanogaster
NWRNWYNAAA
TTTNRWNYWN		 B1H
Zhu et al.(2011)
exd_FlyReg_FBgn0000611 		0.803 0.789
exd
M06245_2.00 		Drosophila melanogaster
NDTGAYRW
WYRTCAHN		 B1H
Zhu et al.(2011)
exd_SOLEXA_2_FBgn0000611 		0.803 0.789
exd
M06246_2.00 		Drosophila melanogaster
NNDTGAYR
YRTCAHNN		 B1H
Zhu et al.(2011)
Exd_SOLEXA_FBgn0000611 		0.803 0.789
PBX4
M00277_2.00 		Homo sapiens
NNDDWHDNNN
NNNHDWHHNN		 PBM
Barrera et al.(2016)
PBX4_REF 		0.801 0.737
PBX4
M10649_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PBX4_01 		0.801 0.737
CBG10835
M01243_2.00 		Caenorhabditis briggsae
NNTKAYDNN
NNHRTMANN		 PBM
Lambert et al.(2019)
pTH11444 		0.705 0.561
PBX4
M00276_2.00 		Homo sapiens
NYTAATTADNN
NNHTAATTARN		 PBM
Barrera et al.(2016)
PBX4_R215Q 		0.662 0.719
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
scaffold405-EXSNAP2012.17 Homeodomain 185 244

Links

Other Homeodomain family TFs
Other Pristionchus exspectatus TFs

435 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30099.m001672 Ricinus communis 30099.m001672 N
AGL61 Arabidopsis lyrata Al_scaffold_0004_541 N
AGL61 Arabidopsis thaliana AT2G24840 N
Bo5g113750 Brassica oleracea Bo5g113750 N
Bo8g099550 Brassica oleracea Bo8g099550 N
Bostr.8705s0016 Boechera stricta Bostr.8705s0016 N
Bra007829 Brassica rapa Bra007829 N
Cagra.1004s0007 Capsella grandiflora Cagra.1004s0007 N
Carubv10024914m.g Capsella rubella Carubv10024914m.g N
Ciclev10013802m.g Citrus clementina Ciclev10013802m.g N
evm.TU.contig_24748.4 Carica papaya evm.TU.contig_24748.4 N
evm.TU.contig_26687.1 Carica papaya evm.TU.contig_26687.1 N
evm.TU.contig_26687.3 Carica papaya evm.TU.contig_26687.3 N
evm.TU.contig_27313 Carica papaya evm.TU.contig_27313 N
evm.TU.contig_27553.5 Carica papaya evm.TU.contig_27553.5 N
evm.TU.contig_28241.1 Carica papaya evm.TU.contig_28241.1 N
evm.TU.contig_28241.3 Carica papaya evm.TU.contig_28241.3 N
evm.TU.contig_30005.1 Carica papaya evm.TU.contig_30005.1 N
evm.TU.contig_30689 Carica papaya evm.TU.contig_30689 N
evm.TU.contig_30908.1 Carica papaya evm.TU.contig_30908.1 N
evm.TU.contig_31285.2 Carica papaya evm.TU.contig_31285.2 N
evm.TU.contig_31965.2 Carica papaya evm.TU.contig_31965.2 N
evm.TU.contig_33038 Carica papaya evm.TU.contig_33038 N
evm.TU.contig_34259 Carica papaya evm.TU.contig_34259 N
evm.TU.contig_34792.1 Carica papaya evm.TU.contig_34792.1 N
evm.TU.contig_35176.1 Carica papaya evm.TU.contig_35176.1 N
evm.TU.contig_35751 Carica papaya evm.TU.contig_35751 N
evm.TU.contig_37047 Carica papaya evm.TU.contig_37047 N
evm.TU.contig_37271 Carica papaya evm.TU.contig_37271 N
evm.TU.contig_38122.1 Carica papaya evm.TU.contig_38122.1 N
evm.TU.contig_38329 Carica papaya evm.TU.contig_38329 N
evm.TU.contig_41894.2 Carica papaya evm.TU.contig_41894.2 N
evm.TU.contig_43014 Carica papaya evm.TU.contig_43014 N
evm.TU.contig_47064.2 Carica papaya evm.TU.contig_47064.2 N
evm.TU.supercontig_1259.1 Carica papaya evm.TU.supercontig_1259.1 N
evm.TU.supercontig_1455.2 Carica papaya evm.TU.supercontig_1455.2 N
evm.TU.supercontig_2423.2 Carica papaya evm.TU.supercontig_2423.2 N
evm.TU.supercontig_347.11 Carica papaya evm.TU.supercontig_347.11 N
evm.TU.supercontig_347.4 Carica papaya evm.TU.supercontig_347.4 N
evm.TU.supercontig_347.7 Carica papaya evm.TU.supercontig_347.7 N
evm.TU.supercontig_348.3 Carica papaya evm.TU.supercontig_348.3 N
evm.TU.supercontig_348.4 Carica papaya evm.TU.supercontig_348.4 N
evm.TU.supercontig_348.8 Carica papaya evm.TU.supercontig_348.8 N
evm.TU.supercontig_439.1 Carica papaya evm.TU.supercontig_439.1 N
evm.TU.supercontig_439.3 Carica papaya evm.TU.supercontig_439.3 N
evm.TU.supercontig_625.2 Carica papaya evm.TU.supercontig_625.2 N
evm.TU.supercontig_625.4 Carica papaya evm.TU.supercontig_625.4 N
evm.TU.supercontig_654.4 Carica papaya evm.TU.supercontig_654.4 N
evm.TU.supercontig_654.6 Carica papaya evm.TU.supercontig_654.6 N
evm.TU.supercontig_758.4 Carica papaya evm.TU.supercontig_758.4 N
Gorai.006G127800 Gossypium raimondii Gorai.006G127800 N
orange1.1g045481m.g Citrus sinensis orange1.1g045481m.g N
PGSC0003DMG400036160 Solanum tuberosum PGSC0003DMG400036160 N
PGSC0003DMG400041035 Solanum tuberosum PGSC0003DMG400041035 N
POPTR_0007s03430 Populus trichocarpa POPTR_0007s03430 N
SapurV1A.0019s0690 Salix purpurea SapurV1A.0019s0690 N
Solyc01g106730.1 Solanum lycopersicum Solyc01g106730.1 N
TCM_006323 Theobroma cacao TCM_006323 N
Thhalv10000479m.g Eutrema salsugineum Thhalv10000479m.g N
Thhalv10003338m.g Eutrema salsugineum Thhalv10003338m.g N
VIT_01s0010g01530 Vitis vinifera VIT_01s0010g01530 N