SROB_0000927801 (Schistosoma rodhaini)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 SROB_0000927801 T236401_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.696 0.283
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.696 0.283
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.696 0.283
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.696 0.283
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.696 0.283
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.696 0.283
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.696 0.283
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.696 0.283
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.696 0.283
VAX1
M03168_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX1_1 		0.676 0.370
VAX1
M05182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX 		0.676 0.370
VAX1
M05183_2.00 		Homo sapiens
BTMATKRN
NYMATKAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX 		0.676 0.370
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SROB_0000927801-mRNA-1 Homeodomain 649 694

Links

Other Homeodomain family TFs
Other Schistosoma rodhaini TFs

1223 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
30209.m001510 Ricinus communis 30209.m001510 N 0.000
AMTR_s00011p00262800 Amborella trichopoda AMTR_s00011p00262800 N 0.000
Aquca_052_00043 Aquilegia coerulea Aquca_052_00043 N 0.000
AT3G18380 Arabidopsis thaliana AT3G18380 N 0.000
BGIOSGA021223 Oryza indica BGIOSGA021223 N 0.000
Bo1g117640 Brassica oleracea Bo1g117640 N 0.000
Bo5g118650 Brassica oleracea Bo5g118650 N 0.000
Bostr.19424s0824 Boechera stricta Bostr.19424s0824 N 0.000
Bra022316 Brassica rapa Bra022316 N 0.000
Bra037587 Brassica rapa Bra037587 N 0.000
BRADI1G42040 Brachypodium distachyon BRADI1G42040 N 0.000
Cagra.1681s0007 Capsella grandiflora Cagra.1681s0007 N 0.000
Carubv10014092m.g Capsella rubella Carubv10014092m.g N 0.000
chr3.CM0282.620.nc Lotus japonicus chr3.CM0282.620.nc N 0.000
chr3.CM0282.640.nc Lotus japonicus chr3.CM0282.640.nc N 0.000
Ciclev10008640m.g Citrus clementina Ciclev10008640m.g N 0.000
Cucsa.032420 Cucumis sativus Cucsa.032420 N 0.000
Eucgr.F01181 Eucalyptus grandis Eucgr.F01181 N 0.000
evm.TU.supercontig_80.16 Carica papaya evm.TU.supercontig_80.16 N 0.000
fgenesh2_kg.3__2039__AT3G18380.2 Arabidopsis lyrata fgenesh2_kg.3__2039__AT3G18380.2 N 0.000
gene27205-v1.0-hybrid Fragaria vesca gene27205-v1.0-hybrid N 0.000
GLYMA06G35561 Glycine max GLYMA06G35561 N 0.000
GLYMA12G18490 Glycine max GLYMA12G18490 N 0.000
Gorai.002G065900 Gossypium raimondii Gorai.002G065900 N 0.000
Gorai.013G172000 Gossypium raimondii Gorai.013G172000 N 0.000
GRMZM2G111204 Zea mays GRMZM2G111204 N 0.000
GRMZM2G126170 Zea mays GRMZM2G126170 N 0.000
GSMUA_Achr4G18450_001 Musa acuminata GSMUA_Achr4G18450_001 N 0.000
LPERR06G11990 Leersia perrieri LPERR06G11990 N 0.000
Lus10013684.g Linum usitatissimum Lus10013684.g N 0.000
Lus10017944.g Linum usitatissimum Lus10017944.g N 0.000
MDP0000268133 Malus domestica MDP0000268133 N 0.000
MDP0000315095 Malus domestica MDP0000315095 N 0.000
mgf014854m Mimulus guttatus mgf014854m N 0.000
MLOC_61712 Hordeum vulgare MLOC_61712 N 0.000
MTR_8g061040 Medicago truncatula MTR_8g061040 N 0.000
OBART06G15310 Oryza barthii OBART06G15310 N 0.000
OLONG_009306 Oryza longistaminata OLONG_009306 N 0.000
OMERI06G16500 Oryza meridionalis OMERI06G16500 N 0.000
OPUNC06G13990 Oryza punctata OPUNC06G13990 N 0.000
orange1.1g016887m.g Citrus sinensis orange1.1g016887m.g N 0.000
ORUFI06G16210 Oryza rufipogon ORUFI06G16210 N 0.000
OS06G0485100 Oryza sativa OS06G0485100 N 0.000
Pavir.Ba02980 Panicum virgatum Pavir.Ba02980 N 0.000
Pavir.Bb01334 Panicum virgatum Pavir.Bb01334 N 0.000
PK03811.1 Cannabis sativa PK03811.1 N 0.000
Pm011344 Prunus mume Pm011344 N 0.000
POPTR_0011s09970 Populus trichocarpa POPTR_0011s09970 N 0.000
POPTR_0174s00240 Populus trichocarpa POPTR_0174s00240 N 0.000
PRUPE_ppa007389mg Prunus persica PRUPE_ppa007389mg N 0.000
SapurV1A.0083s0320 Salix purpurea SapurV1A.0083s0320 N 0.000
SapurV1A.0303s0100 Salix purpurea SapurV1A.0303s0100 N 0.000
Sb02g020940 Sorghum bicolor Sb02g020940 N 0.000
Si030167m.g Setaria italica Si030167m.g N 0.000
Solyc10g007130.2 Solanum lycopersicum Solyc10g007130.2 N 0.000
TCM_046875 Theobroma cacao TCM_046875 N 0.000
Traes_7DS_197A95728 Triticum aestivum Traes_7DS_197A95728 N 0.000
TRIUR3_19251 Triticum urartu TRIUR3_19251 N 0.000
TRIUR3_26093 Triticum urartu TRIUR3_26093 N 0.000
VIT_19s0014g01880 Vitis vinifera VIT_19s0014g01880 N 0.000