Pvit_14327 (Pogona vitticeps)
IRF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00605 (IRF) IPR001346 Pvit_14327 T244577_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
IRF5
M03332_2.00 		Homo sapiens
YCGAAACCGAAMCY
RGKTTCGGTTTCGR		 SELEX
Jolma et al.(2013)
IRF5_1 		0.838 0.838
IRF5
M03333_2.00 		Homo sapiens
HACCGAAACYV
BRGTTTCGGTD		 SELEX
Jolma et al.(2013)
IRF5_2 		0.838 0.838
IRF5
M05535_2.00 		Homo sapiens
NCGAAACCGAWACH
DGTWTCGGTTTCGN		 SELEX
Yin et al.(2017)
IRF5_eDBD_HT-SELEX 		0.838 0.838
IRF5
M05537_2.00 		Homo sapiens
NCGAAACCGAAACY
RGTTTCGGTTTCGN		 SELEX
Yin et al.(2017)
IRF5_FL_HT-SELEX 		0.838 0.838
IRF5
M10884_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$IRF5_Q3 		0.838 0.838
IRF5
M05536_2.00 		Homo sapiens
NYGAWACYGAWACH
DGTWTCRGTWTCRN		 SELEX
Yin et al.(2017)
IRF5_eDBD_Methyl-HT-SELEX 		0.838 0.838
IRF5
M05538_2.00 		Homo sapiens
NYGAAACCGAWACY
RGTWTCGGTTTCRN		 SELEX
Yin et al.(2017)
IRF5_FL_Methyl-HT-SELEX 		0.838 0.838
Irf5
M00177_2.00 		Mus musculus
NNNHGADASH
DSTHTCDNNN		 PBM
Badis et al.(2009)
Irf5_3874 		0.819 0.819
IRF5
M02256_2.00 		Oryctolagus cuniculus
NHCGAAACYN
NRGTTTCGDN		 PBM
Weirauch et al.(2014)
pTH9272 		0.819 0.819
irf5.L
M02260_2.00 		Xenopus laevis
VNCGADACHN
NDGTHTCGNB		 PBM
Weirauch et al.(2014)
pTH9367 		0.819 0.819
IRF6
M02254_2.00 		Meleagris gallopavo
NRNCGAWACY
RGTWTCGNYN		 PBM
Weirauch et al.(2014)
pTH9210 		0.781 0.781
IRF6
M02253_2.00 		Gallus gallus
NNMCNAAWNN
NNWTTNGKNN		 PBM
Weirauch et al.(2014)
pTH9178 		0.771 0.771
irf6.2
M02259_2.00 		Xenopus tropicalis
NVNHGAWACH
DGTWTCDNBN		 PBM
Weirauch et al.(2014)
pTH9302 		0.762 0.762
Irf6
M00176_2.00 		Mus musculus
NNNHGADASN
NSTHTCDNNN		 PBM
Badis et al.(2009)
Irf6_3803 		0.752 0.752
IRF6
M05527_2.00 		Homo sapiens
RGTWTCGNNNNNNYGAWACY
RGTWTCRNNNNNNCGAWACY		 SELEX
Yin et al.(2017)
IRF6_eDBD_HT-SELEX 		0.752 0.752
IRF6
M05529_2.00 		Homo sapiens
ACCGAAACT
AGTTTCGGT		 SELEX
Yin et al.(2017)
IRF6_FL_HT-SELEX 		0.752 0.752
IRF6
M05528_2.00 		Homo sapiens
RGTWTCGNHNNDNYGAWACY
RGTWTCRNHNNDNCGAWACY		 SELEX
Yin et al.(2017)
IRF6_eDBD_Methyl-HT-SELEX 		0.752 0.752
IRF6
M05530_2.00 		Homo sapiens
ACCGAWACY
RGTWTCGGT		 SELEX
Yin et al.(2017)
IRF6_FL_Methyl-HT-SELEX 		0.752 0.752
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pvit_14327 IRF 9 114

Links

Other IRF family TFs
Other Pogona vitticeps TFs

127 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29872.m000537 Ricinus communis 29872.m000537 N
Aquca_030_00364 Aquilegia coerulea Aquca_030_00364 N
SCL23 Arabidopsis thaliana AT5G41920 N
BGIOSGA025964 Oryza indica BGIOSGA025964 N
Bostr.17016s0016 Boechera stricta Bostr.17016s0016 N
Bostr.25375s0003 Boechera stricta Bostr.25375s0003 N
BRADI1G24310 Brachypodium distachyon BRADI1G24310 N
Cagra.6263s0002 Capsella grandiflora Cagra.6263s0002 N
Carubv10004949m.g Capsella rubella Carubv10004949m.g N
cassava29451.valid.m1 Manihot esculenta cassava29451.valid.m1 N
Ca_11130 Cicer arietinum Ca_11130 N
chr3.CM0460.360.nd Lotus japonicus chr3.CM0460.360.nd N
Ciclev10011732m.g Citrus clementina Ciclev10011732m.g N
Cla005525 Citrullus lanatus Cla005525 N
Cucsa.180010 Cucumis sativus Cucsa.180010 N
Eucgr.A00903 Eucalyptus grandis Eucgr.A00903 N
evm.TU.supercontig_8.295 Carica papaya evm.TU.supercontig_8.295 N
fgenesh2_kg.7__3225__AT5G41920.1 Arabidopsis lyrata fgenesh2_kg.7__3225__AT5G41920.1 N
gene24339-v1.0-hybrid Fragaria vesca gene24339-v1.0-hybrid N
GLYMA11G10220 Glycine max GLYMA11G10220 N
GLYMA12G02530 Glycine max GLYMA12G02530 N
Gorai.004G063200 Gossypium raimondii Gorai.004G063200 N
GRMZM2G106548 Zea mays GRMZM2G106548 N
LPERR07G16410 Leersia perrieri LPERR07G16410 N
MDP0000269044 Malus domestica MDP0000269044 N
MDP0000287321 Malus domestica MDP0000287321 N
MDP0000289554 Malus domestica MDP0000289554 N
MLOC_62589 Hordeum vulgare MLOC_62589 N
MTR_4g076020 Medicago truncatula MTR_4g076020 N
OBART07G19080 Oryza barthii OBART07G19080 N
OGLUM07G18870 Oryza glumaepatula OGLUM07G18870 N
OMERI07G15800 Oryza meridionalis OMERI07G15800 N
ONIVA07G17430 Oryza nivara ONIVA07G17430 N
OPUNC07G17970 Oryza punctata OPUNC07G17970 N
OPUNC07G18000 Oryza punctata OPUNC07G18000 N
orange1.1g013903m.g Citrus sinensis orange1.1g013903m.g N
ORGLA07G0244600 Oryza glaberrima ORGLA07G0244600 N
ORUFI07G19860 Oryza rufipogon ORUFI07G19860 N
OS07G0567700 Oryza sativa OS07G0567700 N
Pavir.Ba00637 Panicum virgatum Pavir.Ba00637 N
Pavir.Bb03100 Panicum virgatum Pavir.Bb03100 N
PGSC0003DMG400011742 Solanum tuberosum PGSC0003DMG400011742 N
PK21090.1 Cannabis sativa PK21090.1 N
Pm014866 Prunus mume Pm014866 N
POPTR_0006s02220 Populus trichocarpa POPTR_0006s02220 N
POPTR_0016s02030 Populus trichocarpa POPTR_0016s02030 N
PRUPE_ppa005742mg Prunus persica PRUPE_ppa005742mg N
SapurV1A.0154s0180 Salix purpurea SapurV1A.0154s0180 N
SapurV1A.0295s0450 Salix purpurea SapurV1A.0295s0450 N
Si032551m.g Setaria italica Si032551m.g N
Solyc07g043330.1 Solanum lycopersicum Solyc07g043330.1 N
Thhalv10027784m.g Eutrema salsugineum Thhalv10027784m.g N
VIT_03s0017g01660 Vitis vinifera VIT_03s0017g01660 N