Bo9g177060 (Brassica oleracea)
MADF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF10545 (MADF_DNA_bdg) IPR006578 Bo9g177060 T248006_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G05550
M06978_2.00 		Arabidopsis thaliana
HNDYCGCCGGMRWND
HNWYKCCGGCGRHND		 Dap-seq
OMalley et al.(2016)
AT5G05550_col_a 		0.837 0.697
AT5G05550
M06979_2.00 		Arabidopsis thaliana
HYNYCGCCGGARWHD
HDWYTCCGGCGRNRD		 Dap-seq
OMalley et al.(2016)
AT5G05550_colamp_a 		0.837 0.697
For this family, TFs with SR scores > 0.812 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo9g177060.1 MADF 45 116

Links

Other MADF family TFs
Other Brassica oleracea TFs

28 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29814.m000741 Ricinus communis 29814.m000741 I 0.857
AT3G11100 Arabidopsis thaliana AT3G11100 I 0.936
AT5G05550 Arabidopsis thaliana AT5G05550 D 0.837
Bo5g136850 Brassica oleracea Bo5g136850 I 0.937
Bostr.13129s0416 Boechera stricta Bostr.13129s0416 I 0.837
Bostr.19424s1046 Boechera stricta Bostr.19424s1046 I 0.936
Bra009119 Brassica rapa Bra009119 I 0.966
Bra034165 Brassica rapa Bra034165 I 0.880
Bra034866 Brassica rapa Bra034866 I 0.853
Cagra.1504s0056 Capsella grandiflora Cagra.1504s0056 I 0.843
Carubv10001830m.g Capsella rubella Carubv10001830m.g I 0.871
Carubv10014421m.g Capsella rubella Carubv10014421m.g I 0.851
Ciclev10033792m.g Citrus clementina Ciclev10033792m.g I 0.837
evm.TU.supercontig_19.152 Carica papaya evm.TU.supercontig_19.152 I 0.856
GSMUA_Achr3G05880_001 Musa acuminata GSMUA_Achr3G05880_001 I 0.813
GSMUA_Achr8G23650_001 Musa acuminata GSMUA_Achr8G23650_001 I 0.825
GSMUA_Achr9G04510_001 Musa acuminata GSMUA_Achr9G04510_001 I 0.856
MDP0000097759 Malus domestica MDP0000097759 N 0.855
MDP0000943251 Malus domestica MDP0000943251 N 0.825
orange1.1g024563m.g Citrus sinensis orange1.1g024563m.g I 0.837
PGSC0003DMG400030023 Solanum tuberosum PGSC0003DMG400030023 I 0.837
POPTR_0008s07140 Populus trichocarpa POPTR_0008s07140 I 0.856
PRUPE_ppa010427mg Prunus persica PRUPE_ppa010427mg I 0.851
SapurV1A.0650s0110 Salix purpurea SapurV1A.0650s0110 I 0.856
scaffold_301280.1 Arabidopsis lyrata scaffold_301280.1 I 0.936
Solyc06g051120.2 Solanum lycopersicum Solyc06g051120.2 I 0.837
Thhalv10021383m.g Eutrema salsugineum Thhalv10021383m.g I 0.937
VIT_13s0067g01440 Vitis vinifera VIT_13s0067g01440 N 0.819