Cagra.12398s0004 (Capsella grandiflora)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Cagra.12398s0004 T257679_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.12398s0004.1.p MADS box 16 63

Links

Other MADS box family TFs
Other Capsella grandiflora TFs

22 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29790.m000843 Ricinus communis 29790.m000843 I
30138.m003899 Ricinus communis 30138.m003899 I
30138.m003913 Ricinus communis 30138.m003913 I
AMTR_s00006p00250310 Amborella trichopoda AMTR_s00006p00250310 I
Aquca_002_00952 Aquilegia coerulea Aquca_002_00952 I
BIM2 Arabidopsis thaliana AT1G69010 D
BIM1 Arabidopsis thaliana AT5G08130 D
BGIOSGA005697 Oryza indica BGIOSGA005697 I
BGIOSGA028888 Oryza indica BGIOSGA028888 I
BGIOSGA030958 Oryza indica BGIOSGA030958 I
Bo2g062560 Brassica oleracea Bo2g062560 I
Bo2g161110 Brassica oleracea Bo2g161110 I
Bo3g004690 Brassica oleracea Bo3g004690 I
Bo5g020460 Brassica oleracea Bo5g020460 I
Bo6g108530 Brassica oleracea Bo6g108530 I
Bo9g174770 Brassica oleracea Bo9g174770 I
Bostr.10273s0468 Boechera stricta Bostr.10273s0468 I
Bostr.13129s0152 Boechera stricta Bostr.13129s0152 I
Bra004355 Brassica rapa Bra004355 I
Bra005969 Brassica rapa Bra005969 I
Bra009322 Brassica rapa Bra009322 I
Bra029354 Brassica rapa Bra029354 I
Bra038332 Brassica rapa Bra038332 I
BRADI3G38970 Brachypodium distachyon BRADI3G38970 I
BRADI3G56340 Brachypodium distachyon BRADI3G56340 I
BRADI4G32967 Brachypodium distachyon BRADI4G32967 I
Cagra.1157s0023 Capsella grandiflora Cagra.1157s0023 I
Cagra.1365s0019 Capsella grandiflora Cagra.1365s0019 I
Carubv10000655m.g Capsella rubella Carubv10000655m.g I
Carubv10020679m.g Capsella rubella Carubv10020679m.g I
cassava14.valid.m1 Manihot esculenta cassava14.valid.m1 I
cassava15.valid.m1 Manihot esculenta cassava15.valid.m1 I
cassava29314.valid.m1 Manihot esculenta cassava29314.valid.m1 I
cassava29318.valid.m1 Manihot esculenta cassava29318.valid.m1 I
cassava43370.valid.m1 Manihot esculenta cassava43370.valid.m1 I
cassava43379.valid.m1 Manihot esculenta cassava43379.valid.m1 I
Ca_22043 Cicer arietinum Ca_22043 I
Ciclev10012135m.g Citrus clementina Ciclev10012135m.g I
Ciclev10020248m.g Citrus clementina Ciclev10020248m.g I
Ciclev10032020m.g Citrus clementina Ciclev10032020m.g I
Cla018818 Citrullus lanatus Cla018818 I
Cla022382 Citrullus lanatus Cla022382 I
Cucsa.113490 Cucumis sativus Cucsa.113490 I
Cucsa.174600 Cucumis sativus Cucsa.174600 I
Cucsa.198520 Cucumis sativus Cucsa.198520 I
Cucsa.328060 Cucumis sativus Cucsa.328060 I
estExt_fgenesh1_pg.C_2110039 Physcomitrella patens estExt_fgenesh1_pg.C_2110039 I
Eucgr.B00645 Eucalyptus grandis Eucgr.B00645 I
Eucgr.B03113 Eucalyptus grandis Eucgr.B03113 I
Eucgr.I02069 Eucalyptus grandis Eucgr.I02069 I
evm.TU.supercontig_289.6 Carica papaya evm.TU.supercontig_289.6 I
evm.TU.supercontig_3.225 Carica papaya evm.TU.supercontig_3.225 I
F775_23096 Aegilops tauschii F775_23096 I
fgenesh1_pg.scaffold_37000071 Physcomitrella patens fgenesh1_pg.scaffold_37000071 D
BIM2 Arabidopsis lyrata fgenesh2_kg.2__1159__AT1G69010.1 I
gene04534-v1.0-hybrid Fragaria vesca gene04534-v1.0-hybrid I
gene26139-v1.0-hybrid Fragaria vesca gene26139-v1.0-hybrid I
GLYMA01G09010 Glycine max GLYMA01G09010 I
GLYMA02G13670 Glycine max GLYMA02G13670 I
GLYMA05G07490 Glycine max GLYMA05G07490 I
GLYMA08G28010 Glycine max GLYMA08G28010 I
GLYMA17G08980 Glycine max GLYMA17G08980 I
GLYMA18G51080 Glycine max GLYMA18G51080 I
Gorai.001G197500 Gossypium raimondii Gorai.001G197500 I
Gorai.006G269200 Gossypium raimondii Gorai.006G269200 I
Gorai.007G040600 Gossypium raimondii Gorai.007G040600 I
Gorai.009G327300 Gossypium raimondii Gorai.009G327300 I
Gorai.013G098000 Gossypium raimondii Gorai.013G098000 I
GRMZM2G009478 Zea mays GRMZM2G009478 I
GRMZM2G089501 Zea mays GRMZM2G089501 I
GRMZM2G317450 Zea mays GRMZM2G317450 I
GSMUA_Achr2G05450_001 Musa acuminata GSMUA_Achr2G05450_001 I
GSMUA_Achr3G10640_001 Musa acuminata GSMUA_Achr3G10640_001 I
GSMUA_Achr4G19530_001 Musa acuminata GSMUA_Achr4G19530_001 I
GSMUA_Achr9G19110_001 Musa acuminata GSMUA_Achr9G19110_001 I
GSMUA_Achr9G28050_001 Musa acuminata GSMUA_Achr9G28050_001 I
gw1.90.123.1 Physcomitrella patens gw1.90.123.1 I
LPERR08G15680 Leersia perrieri LPERR08G15680 I
LPERR09G10080 Leersia perrieri LPERR09G10080 I
Lus10004630.g Linum usitatissimum Lus10004630.g I
Lus10007974.g Linum usitatissimum Lus10007974.g I
Lus10013502.g Linum usitatissimum Lus10013502.g I
Lus10026684.g Linum usitatissimum Lus10026684.g I
Lus10034358.g Linum usitatissimum Lus10034358.g I
MDP0000261293 Malus domestica MDP0000261293 I
mgf001137m Mimulus guttatus mgf001137m I
mgf005849m Mimulus guttatus mgf005849m I
mgf011829m Mimulus guttatus mgf011829m I
mgf013208m Mimulus guttatus mgf013208m I
MLOC_62335 Hordeum vulgare MLOC_62335 I
MTR_4g110040 Medicago truncatula MTR_4g110040 I
MTR_5g048350 Medicago truncatula MTR_5g048350 I
MTR_7g017320 Medicago truncatula MTR_7g017320 I
OB02G38020 Oryza brachyantha OB02G38020 I
OB08G25940 Oryza brachyantha OB08G25940 I
OBART09G13850 Oryza barthii OBART09G13850 I
OGLUM08G19830 Oryza glumaepatula OGLUM08G19830 I
OGLUM09G14430 Oryza glumaepatula OGLUM09G14430 I
OLONG_003583 Oryza longistaminata OLONG_003583 I
OLONG_020060 Oryza longistaminata OLONG_020060 I
OMERI09G10560 Oryza meridionalis OMERI09G10560 I
ONIVA08G20800 Oryza nivara ONIVA08G20800 I
ONIVA09G14370 Oryza nivara ONIVA09G14370 I
OPUNC08G16820 Oryza punctata OPUNC08G16820 I
OPUNC09G12310 Oryza punctata OPUNC09G12310 I
orange1.1g019485m.g Citrus sinensis orange1.1g019485m.g I
orange1.1g019960m.g Citrus sinensis orange1.1g019960m.g I
orange1.1g038451m.g Citrus sinensis orange1.1g038451m.g I
ORGLA02G0264700 Oryza glaberrima ORGLA02G0264700 I
ORGLA06G0286200 Oryza glaberrima ORGLA06G0286200 I
ORGLA08G0164200 Oryza glaberrima ORGLA08G0164200 I
ORGLA09G0105800 Oryza glaberrima ORGLA09G0105800 I
ORUFI08G21030 Oryza rufipogon ORUFI08G21030 I
ORUFI09G14830 Oryza rufipogon ORUFI09G14830 I
OS02G0726700 Oryza sativa OS02G0726700 I
OS08G0490000 Oryza sativa OS08G0490000 I
OS09G0475400 Oryza sativa OS09G0475400 I
Pavir.Aa00700 Panicum virgatum Pavir.Aa00700 I
Pavir.Ab03017 Panicum virgatum Pavir.Ab03017 I
Pavir.Fb01833 Panicum virgatum Pavir.Fb01833 I
Pavir.J04606 Panicum virgatum Pavir.J04606 I
Pavir.J38910 Panicum virgatum Pavir.J38910 I
PGSC0003DMG400001919 Solanum tuberosum PGSC0003DMG400001919 I
PGSC0003DMG400019654 Solanum tuberosum PGSC0003DMG400019654 I
PK00238.1 Cannabis sativa PK00238.1 I
PK01364.1 Cannabis sativa PK01364.1 I
PK10562.1 Cannabis sativa PK10562.1 I
POPTR_0004s11180 Populus trichocarpa POPTR_0004s11180 I
POPTR_0008s11120 Populus trichocarpa POPTR_0008s11120 I
POPTR_0010s14740 Populus trichocarpa POPTR_0010s14740 I
POPTR_0012s06650 Populus trichocarpa POPTR_0012s06650 I
POPTR_0015s03550 Populus trichocarpa POPTR_0015s03550 I
POPTR_0017s13610 Populus trichocarpa POPTR_0017s13610 I
PRUPE_ppa003436mg Prunus persica PRUPE_ppa003436mg I
PRUPE_ppa008387mg Prunus persica PRUPE_ppa008387mg I
PRUPE_ppa008856mg Prunus persica PRUPE_ppa008856mg I
SapurV1A.0060s0510 Salix purpurea SapurV1A.0060s0510 I
SapurV1A.0084s0570 Salix purpurea SapurV1A.0084s0570 I
SapurV1A.0178s0150 Salix purpurea SapurV1A.0178s0150 I
SapurV1A.0274s0040 Salix purpurea SapurV1A.0274s0040 I
SapurV1A.0868s0010 Salix purpurea SapurV1A.0868s0010 I
SapurV1A.2517s0020 Salix purpurea SapurV1A.2517s0020 I
Sb02g027460 Sorghum bicolor Sb02g027460 I
Sb04g029270 Sorghum bicolor Sb04g029270 I
Sb07g028860 Sorghum bicolor Sb07g028860 I
BIM1 Arabidopsis lyrata scaffold_600819.1 I
SELMODRAFT_451475 Selaginella moellendorffii SELMODRAFT_451475 I
SELMODRAFT_451477 Selaginella moellendorffii SELMODRAFT_451477 I
Si013622m.g Setaria italica Si013622m.g I
Si016505m.g Setaria italica Si016505m.g I
Si029604m.g Setaria italica Si029604m.g I
Solyc03g114720.2 Solanum lycopersicum Solyc03g114720.2 I
Solyc04g005280.2 Solanum lycopersicum Solyc04g005280.2 I
Solyc05g011810.2 Solanum lycopersicum Solyc05g011810.2 I
TCM_011433 Theobroma cacao TCM_011433 I
TCM_014392 Theobroma cacao TCM_014392 I
TCM_019015 Theobroma cacao TCM_019015 I
Thhalv10013181m.g Eutrema salsugineum Thhalv10013181m.g I
Thhalv10018889m.g Eutrema salsugineum Thhalv10018889m.g I
Thhalv10027863m.g Eutrema salsugineum Thhalv10027863m.g I
Traes_5AL_0D4BDDDCD Triticum aestivum Traes_5AL_0D4BDDDCD I
Traes_5BL_AAC9C7238 Triticum aestivum Traes_5BL_AAC9C7238 I
Traes_5DL_E96693018 Triticum aestivum Traes_5DL_E96693018 I
Traes_6BL_DA93728B3 Triticum aestivum Traes_6BL_DA93728B3 I
Traes_6DL_D38F3257B Triticum aestivum Traes_6DL_D38F3257B I
BIM2 Vitis vinifera VIT_01s0010g00540 I
BIM3 Vitis vinifera VIT_14s0083g00930 I
BIM1 Vitis vinifera VIT_17s0000g04790 I