Carubv10007456m.g (Capsella rubella)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 Carubv10007456m.g T257749_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL78
M10932_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT5G65330_01 		0.723 0.723
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10007456m MADS box 10 56

Links

Other MADS box family TFs
Other Capsella rubella TFs

7 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ALUE_0000922801 Ascaris lumbricoides ALUE_0000922801 N 0.000
ANCCEY_13226 Ancylostoma ceylanicum ANCCEY_13226 I 0.000
ASU_02073 Ascaris suum ASU_02073 N 0.000
augustus_masked-nMf.1.1.scaf21762-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf21762-processed-gene-0.0 I 0.000
CBG06601 Caenorhabditis briggsae CBG06601 I 0.000
CBG06611 Caenorhabditis briggsae CBG06611 I 0.000
CBG14515 Caenorhabditis briggsae CBG14515 I 0.000
CBG20729 Caenorhabditis briggsae CBG20729 I 0.000
CBG22870 Caenorhabditis briggsae CBG22870 I 0.000
CBN12210 Caenorhabditis brenneri CBN12210 I 0.000
CBN21486 Caenorhabditis brenneri CBN21486 I 0.000
CBN23838 Caenorhabditis brenneri CBN23838 I 0.000
CBN28290 Caenorhabditis brenneri CBN28290 I 0.000
CJA02156 Caenorhabditis japonica CJA02156 I 0.000
CRE00301 Caenorhabditis remanei CRE00301 I 0.000
CRE08691 Caenorhabditis remanei CRE08691 I 0.000
CRE15644 Caenorhabditis remanei CRE15644 I 0.000
CRE15675 Caenorhabditis remanei CRE15675 I 0.000
CRE18430 Caenorhabditis remanei CRE18430 I 0.000
GPLIN_000282900 Globodera pallida GPLIN_000282900 I 0.000
GPLIN_001629700 Globodera pallida GPLIN_001629700 N 0.000
HCOI00483700 Haemonchus contortus HCOI00483700 I 0.000
HPLM_0000277901 Haemonchus placei HPLM_0000277901 I 0.000
L596_g14586 Steinernema carpocapsae L596_g14586 I 0.000
L596_g27594 Steinernema carpocapsae L596_g27594 N 0.000
L889_g21170 Steinernema feltiae L889_g21170 N 0.000
L889_g6696 Steinernema feltiae L889_g6696 I 0.000
L892_g15823 Steinernema scapterisci L892_g15823 N 0.000
L898_g12798 Steinernema monticolum L898_g12798 I 0.000
L898_g30838 Steinernema monticolum L898_g30838 N 0.000
L898_g3512 Steinernema monticolum L898_g3512 I 0.000
MhA1_Contig1192.frz3.gene3 Meloidogyne hapla MhA1_Contig1192.frz3.gene3 I 0.000
Minc14668 Meloidogyne incognita Minc14668 I 0.000
NBR_0001218401 Nippostrongylus brasiliensis NBR_0001218401 I 0.000
PEQ_0000560101 Parascaris equorum PEQ_0000560101 I 0.000
scaffold31-EXSNAP2012.20 Pristionchus exspectatus scaffold31-EXSNAP2012.20 I 0.000
SMUV_0000241401 Syphacia muris SMUV_0000241401 I 0.000
SMUV_0000241501 Syphacia muris SMUV_0000241501 N 0.000
TCNE_0000667201 Toxocara canis TCNE_0000667201 N 0.000
nhr-45 Caenorhabditis elegans WBGene00003635 I 0.000
nhr-102 Caenorhabditis elegans WBGene00003692 I 0.000
nhr-213 Caenorhabditis elegans WBGene00011520 I 0.000
nhr-178 Caenorhabditis elegans WBGene00017510 I 0.000
nhr-142 Caenorhabditis elegans WBGene00018430 D 0.000