CBG20729 (Caenorhabditis briggsae)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 CBG20729 T301596_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
nhr-142
M00703_2.00 		Caenorhabditis elegans
RGTCACAR
YTGTGACY		 PBM
Narasimhan et al.(2015)
pTH10714 		0.877 0.529
nhr-232
M00700_2.00 		Caenorhabditis elegans
NNTNTDWYN
NRWHANANN		 PBM
Narasimhan et al.(2015)
pTH10647 		0.859 0.514
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CBG20729 Nuclear receptor 15 86

Links

Other Nuclear receptor family TFs
Other Caenorhabditis briggsae TFs

75 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CBN23838 Caenorhabditis brenneri CBN23838 I 0.992
CRE15644 Caenorhabditis remanei CRE15644 I 0.992
CRE15675 Caenorhabditis remanei CRE15675 I 0.984
nhr-170 Caenorhabditis elegans WBGene00008309 I 0.983
CBG20727 Caenorhabditis briggsae CBG20727 I 0.982
nhr-231 Caenorhabditis elegans WBGene00012449 I 0.981
nhr-54 Caenorhabditis elegans WBGene00003644 I 0.975
CBN13569 Caenorhabditis brenneri CBN13569 I 0.965
NBR_0001834701 Nippostrongylus brasiliensis NBR_0001834701 I 0.913
ACOC_0000492601 Angiostrongylus costaricensis ACOC_0000492601 I 0.912
HPBE_0001646201 Heligmosomoides bakeri HPBE_0001646201 I 0.911
CBG22870 Caenorhabditis briggsae CBG22870 I 0.909
SVUK_0002058501 Strongylus vulgaris SVUK_0002058501 I 0.908
HPLM_0000974401 Haemonchus placei HPLM_0000974401 I 0.904
L898_g3512 Steinernema monticolum L898_g3512 I 0.903
CRE30948 Caenorhabditis remanei CRE30948 I 0.896
HCOI01190000 Haemonchus contortus HCOI01190000 I 0.891
HPLM_0000974301 Haemonchus placei HPLM_0000974301 I 0.891
NBR_0001218401 Nippostrongylus brasiliensis NBR_0001218401 I 0.889
ANCCEY_13226 Ancylostoma ceylanicum ANCCEY_13226 I 0.881
HCOI00483700 Haemonchus contortus HCOI00483700 I 0.881
HPLM_0000277901 Haemonchus placei HPLM_0000277901 I 0.881
nhr-142 Caenorhabditis elegans WBGene00018430 D 0.877
CBN21486 Caenorhabditis brenneri CBN21486 I 0.874
CBN28290 Caenorhabditis brenneri CBN28290 I 0.874
CRE18430 Caenorhabditis remanei CRE18430 I 0.874
CBG06601 Caenorhabditis briggsae CBG06601 I 0.873
CBG06611 Caenorhabditis briggsae CBG06611 I 0.873
CBG06599 Caenorhabditis briggsae CBG06599 I 0.869
CBG06609 Caenorhabditis briggsae CBG06609 I 0.869
scaffold31-EXSNAP2012.20 Pristionchus exspectatus scaffold31-EXSNAP2012.20 I 0.868
L596_g14586 Steinernema carpocapsae L596_g14586 I 0.867
L892_g2781 Steinernema scapterisci L892_g2781 I 0.865
L892_g2782 Steinernema scapterisci L892_g2782 I 0.864
CBG09567 Caenorhabditis briggsae CBG09567 I 0.862
CJA09697 Caenorhabditis japonica CJA09697 I 0.862
SVUK_0001603001 Strongylus vulgaris SVUK_0001603001 I 0.860
nhr-232 Caenorhabditis elegans WBGene00012494 D 0.859
L889_g6694 Steinernema feltiae L889_g6694 I 0.858
ANCCEY_07914 Ancylostoma ceylanicum ANCCEY_07914 I 0.857
L596_g14590 Steinernema carpocapsae L596_g14590 I 0.855
L898_g3515 Steinernema monticolum L898_g3515 I 0.849
L596_g14588 Steinernema carpocapsae L596_g14588 I 0.848
L898_g3514 Steinernema monticolum L898_g3514 I 0.843
nhr-213 Caenorhabditis elegans WBGene00011520 I 0.839
nhr-178 Caenorhabditis elegans WBGene00017510 I 0.839
L893_g18992 Steinernema glaseri L893_g18992 I 0.834
CRE08691 Caenorhabditis remanei CRE08691 I 0.831
L892_g2780 Steinernema scapterisci L892_g2780 I 0.830
NBR_0001834801 Nippostrongylus brasiliensis NBR_0001834801 I 0.825
Minc14668 Meloidogyne incognita Minc14668 I 0.824
L889_g6696 Steinernema feltiae L889_g6696 I 0.823
augustus_masked-nMf.1.1.scaf21762-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf21762-processed-gene-0.0 I 0.821
CBG09320 Caenorhabditis briggsae CBG09320 I 0.820
CRE31070 Caenorhabditis remanei CRE31070 I 0.820
L898_g12798 Steinernema monticolum L898_g12798 I 0.819
MhA1_Contig1192.frz3.gene3 Meloidogyne hapla MhA1_Contig1192.frz3.gene3 I 0.817
L596_g14596 Steinernema carpocapsae L596_g14596 I 0.814
L889_g6695 Steinernema feltiae L889_g6695 I 0.807
L898_g4018 Steinernema monticolum L898_g4018 N 0.807
L889_g6692 Steinernema feltiae L889_g6692 I 0.805
CRE08749 Caenorhabditis remanei CRE08749 I 0.803
GPLIN_000282900 Globodera pallida GPLIN_000282900 I 0.802
L596_g14536 Steinernema carpocapsae L596_g14536 I 0.801
nhr-102 Caenorhabditis elegans WBGene00003692 I 0.799
CJA28065 Caenorhabditis japonica CJA28065 I 0.795
CRE18699 Caenorhabditis remanei CRE18699 I 0.793
L596_g14589 Steinernema carpocapsae L596_g14589 I 0.789
L892_g14834 Steinernema scapterisci L892_g14834 N 0.789
CRE08750 Caenorhabditis remanei CRE08750 N 0.778
L889_g6806 Steinernema feltiae L889_g6806 N 0.775
EVEC_0000956701 Enterobius vermicularis EVEC_0000956701 I 0.770
L892_g14825 Steinernema scapterisci L892_g14825 I 0.765
L889_g6792 Steinernema feltiae L889_g6792 I 0.757
L893_g18997 Steinernema glaseri L893_g18997 I 0.750