CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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HPLM_0000974301
(
Haemonchus placei
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00105 (zf-C4)
IPR001628
HPLM_0000974301
T308897_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
nhr-232
M00700_2.00
Caenorhabditis elegans
NNTNTDWYN
NRWHANANN
PBM
Narasimhan et al.(2015)
pTH10647
0.948
0.571
nhr-142
M00703_2.00
Caenorhabditis elegans
RGTCACAR
YTGTGACY
PBM
Narasimhan et al.(2015)
pTH10714
0.899
0.600
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
HPLM_0000974301-mRNA-1
Nuclear receptor
3
73
RQCEVCNKPAHGNHFGVNTCRACAAFFRRSVVQCRKYQCRKANGTCFLTEKENFICRFCRYQKCIALGMTP
Links
Other
Nuclear receptor
family TFs
Other
Haemonchus placei
TFs
88 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
HCOI01190000
Haemonchus contortus
HCOI01190000
I
0.994
ANCCEY_07914
Ancylostoma ceylanicum
ANCCEY_07914
I
0.976
HPBE_0001646201
Heligmosomoides bakeri
HPBE_0001646201
I
0.965
SVUK_0002058501
Strongylus vulgaris
SVUK_0002058501
I
0.955
CBG09567
Caenorhabditis briggsae
CBG09567
I
0.954
CRE30948
Caenorhabditis remanei
CRE30948
I
0.952
HPLM_0000974401
Haemonchus placei
HPLM_0000974401
I
0.951
nhr-232
Caenorhabditis elegans
WBGene00012494
D
0.948
HPLM_0000277901
Haemonchus placei
HPLM_0000277901
I
0.940
HCOI00483700
Haemonchus contortus
HCOI00483700
I
0.940
ANCCEY_13226
Ancylostoma ceylanicum
ANCCEY_13226
I
0.940
NBR_0001218401
Nippostrongylus brasiliensis
NBR_0001218401
I
0.934
scaffold31-EXSNAP2012.20
Pristionchus exspectatus
scaffold31-EXSNAP2012.20
I
0.932
SVUK_0001603001
Strongylus vulgaris
SVUK_0001603001
I
0.926
L892_g2782
Steinernema scapterisci
L892_g2782
I
0.919
L596_g14588
Steinernema carpocapsae
L596_g14588
I
0.913
PEQ_0000560101
Parascaris equorum
PEQ_0000560101
I
0.909
CRE31070
Caenorhabditis remanei
CRE31070
I
0.903
CBN21486
Caenorhabditis brenneri
CBN21486
I
0.903
CBG09320
Caenorhabditis briggsae
CBG09320
I
0.903
CBN28290
Caenorhabditis brenneri
CBN28290
I
0.903
CJA28065
Caenorhabditis japonica
CJA28065
I
0.901
L889_g6798
Steinernema feltiae
L889_g6798
I
0.901
nhr-54
Caenorhabditis elegans
WBGene00003644
I
0.899
nhr-142
Caenorhabditis elegans
WBGene00018430
D
0.899
NBR_0001834701
Nippostrongylus brasiliensis
NBR_0001834701
I
0.897
nhr-170
Caenorhabditis elegans
WBGene00008309
I
0.893
CBG20729
Caenorhabditis briggsae
CBG20729
I
0.891
CRE15675
Caenorhabditis remanei
CRE15675
I
0.890
CRE15644
Caenorhabditis remanei
CRE15644
I
0.884
CBN23838
Caenorhabditis brenneri
CBN23838
I
0.884
ACOC_0000492601
Angiostrongylus costaricensis
ACOC_0000492601
I
0.880
CBG20727
Caenorhabditis briggsae
CBG20727
I
0.879
L892_g14817
Steinernema scapterisci
L892_g14817
I
0.878
L898_g19019
Steinernema monticolum
L898_g19019
I
0.873
L893_g18993
Steinernema glaseri
L893_g18993
I
0.868
NBR_0001834801
Nippostrongylus brasiliensis
NBR_0001834801
I
0.868
nhr-231
Caenorhabditis elegans
WBGene00012449
I
0.867
L898_g4013
Steinernema monticolum
L898_g4013
I
0.865
L889_g6797
Steinernema feltiae
L889_g6797
I
0.858
L889_g6799
Steinernema feltiae
L889_g6799
I
0.857
CBG16982
Caenorhabditis briggsae
CBG16982
I
0.856
L893_g18997
Steinernema glaseri
L893_g18997
I
0.851
L898_g21763
Steinernema monticolum
L898_g21763
I
0.851
L596_g14532
Steinernema carpocapsae
L596_g14532
I
0.838
CBG04928
Caenorhabditis briggsae
CBG04928
I
0.836
CBG15881
Caenorhabditis briggsae
CBG15881
I
0.831
CRE05044
Caenorhabditis remanei
CRE05044
I
0.831
nhr-213
Caenorhabditis elegans
WBGene00011520
I
0.825
CBG06387
Caenorhabditis briggsae
CBG06387
I
0.823
CBN13200
Caenorhabditis brenneri
CBN13200
I
0.823
CBG06609
Caenorhabditis briggsae
CBG06609
I
0.820
CBG06599
Caenorhabditis briggsae
CBG06599
I
0.820
CBN13569
Caenorhabditis brenneri
CBN13569
I
0.818
CRE10693
Caenorhabditis remanei
CRE10693
I
0.818
CRE15097
Caenorhabditis remanei
CRE15097
I
0.818
CRE27862
Caenorhabditis remanei
CRE27862
I
0.816
CJA19466
Caenorhabditis japonica
CJA19466
I
0.802
CBG22870
Caenorhabditis briggsae
CBG22870
I
0.802
L893_g27930
Steinernema glaseri
L893_g27930
I
0.801
L889_g6804
Steinernema feltiae
L889_g6804
I
0.794
L898_g3512
Steinernema monticolum
L898_g3512
I
0.793
nhr-130
Caenorhabditis elegans
WBGene00003720
I
0.786
L596_g14536
Steinernema carpocapsae
L596_g14536
I
0.786
L892_g10843
Steinernema scapterisci
L892_g10843
I
0.783
L898_g3515
Steinernema monticolum
L898_g3515
I
0.781
CJA09697
Caenorhabditis japonica
CJA09697
I
0.781
L889_g6792
Steinernema feltiae
L889_g6792
I
0.777
L596_g14589
Steinernema carpocapsae
L596_g14589
I
0.776
L898_g3514
Steinernema monticolum
L898_g3514
I
0.774
L892_g14814
Steinernema scapterisci
L892_g14814
N
0.772
CRE08749
Caenorhabditis remanei
CRE08749
I
0.770
CRE18698
Caenorhabditis remanei
CRE18698
I
0.768
nhr-218
Caenorhabditis elegans
WBGene00011750
I
0.765
L898_g19021
Steinernema monticolum
L898_g19021
I
0.765
L889_g6695
Steinernema feltiae
L889_g6695
I
0.765
L889_g8185
Steinernema feltiae
L889_g8185
I
0.764
CBG06601
Caenorhabditis briggsae
CBG06601
I
0.762
CBG06611
Caenorhabditis briggsae
CBG06611
I
0.762
CRE18430
Caenorhabditis remanei
CRE18430
I
0.761
nhr-212
Caenorhabditis elegans
WBGene00020153
I
0.758
L892_g2781
Steinernema scapterisci
L892_g2781
I
0.757
L889_g6694
Steinernema feltiae
L889_g6694
I
0.757
L596_g14596
Steinernema carpocapsae
L596_g14596
I
0.755
L596_g14590
Steinernema carpocapsae
L596_g14590
I
0.753
CRE08691
Caenorhabditis remanei
CRE08691
I
0.753
nhr-178
Caenorhabditis elegans
WBGene00017510
I
0.753
L889_g8187
Steinernema feltiae
L889_g8187
I
0.749