CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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L892_g10843
(
Steinernema scapterisci
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00105 (zf-C4)
IPR001628
L892_g10843
T309161_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
nhr-142
M00703_2.00
Caenorhabditis elegans
RGTCACAR
YTGTGACY
PBM
Narasimhan et al.(2015)
pTH10714
0.811
0.586
nhr-232
M00700_2.00
Caenorhabditis elegans
NNTNTDWYN
NRWHANANN
PBM
Narasimhan et al.(2015)
pTH10647
0.750
0.543
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
L892_g10843.t1
Nuclear receptor
2
73
PACAVCGCKAHGVHFQVNSCRACAAFFRRSIAVGKDYKCRRASRDCELKDAASKNICRYCRYQKCLQAGMIY
Links
Other
Nuclear receptor
family TFs
Other
Steinernema scapterisci
TFs
64 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
L889_g6804
Steinernema feltiae
L889_g6804
I
0.984
L596_g14532
Steinernema carpocapsae
L596_g14532
I
0.984
L893_g27930
Steinernema glaseri
L893_g27930
I
0.955
L898_g3512
Steinernema monticolum
L898_g3512
I
0.937
L889_g8185
Steinernema feltiae
L889_g8185
I
0.923
L892_g2782
Steinernema scapterisci
L892_g2782
I
0.912
L596_g14588
Steinernema carpocapsae
L596_g14588
I
0.908
L898_g21763
Steinernema monticolum
L898_g21763
I
0.905
L898_g12799
Steinernema monticolum
L898_g12799
I
0.901
L889_g6692
Steinernema feltiae
L889_g6692
I
0.894
L893_g18992
Steinernema glaseri
L893_g18992
I
0.894
L596_g14596
Steinernema carpocapsae
L596_g14596
I
0.893
L898_g4015
Steinernema monticolum
L898_g4015
N
0.887
L892_g2780
Steinernema scapterisci
L892_g2780
I
0.887
L889_g6696
Steinernema feltiae
L889_g6696
I
0.883
L898_g19012
Steinernema monticolum
L898_g19012
I
0.880
L889_g6792
Steinernema feltiae
L889_g6792
I
0.878
L596_g14541
Steinernema carpocapsae
L596_g14541
N
0.875
L898_g3515
Steinernema monticolum
L898_g3515
I
0.874
L889_g6694
Steinernema feltiae
L889_g6694
I
0.858
L596_g14590
Steinernema carpocapsae
L596_g14590
I
0.854
L898_g4012
Steinernema monticolum
L898_g4012
I
0.853
L898_g4018
Steinernema monticolum
L898_g4018
N
0.852
L596_g14533
Steinernema carpocapsae
L596_g14533
I
0.846
L889_g6695
Steinernema feltiae
L889_g6695
I
0.845
L893_g18993
Steinernema glaseri
L893_g18993
I
0.843
NBR_0001834801
Nippostrongylus brasiliensis
NBR_0001834801
I
0.842
L892_g10842
Steinernema scapterisci
L892_g10842
I
0.841
L892_g14818
Steinernema scapterisci
L892_g14818
I
0.839
L898_g2943
Steinernema monticolum
L898_g2943
N
0.839
HPBE_0001646201
Heligmosomoides bakeri
HPBE_0001646201
I
0.831
L596_g14537
Steinernema carpocapsae
L596_g14537
I
0.827
L889_g8187
Steinernema feltiae
L889_g8187
I
0.826
NBR_0001834701
Nippostrongylus brasiliensis
NBR_0001834701
I
0.824
HPLM_0000974401
Haemonchus placei
HPLM_0000974401
I
0.822
CRE31070
Caenorhabditis remanei
CRE31070
I
0.818
CBG09320
Caenorhabditis briggsae
CBG09320
I
0.818
CJA28065
Caenorhabditis japonica
CJA28065
I
0.812
scaffold31-EXSNAP2012.20
Pristionchus exspectatus
scaffold31-EXSNAP2012.20
I
0.812
nhr-142
Caenorhabditis elegans
WBGene00018430
D
0.811
L892_g10840
Steinernema scapterisci
L892_g10840
N
0.809
L596_g14536
Steinernema carpocapsae
L596_g14536
I
0.808
CBN21486
Caenorhabditis brenneri
CBN21486
I
0.801
CBN28290
Caenorhabditis brenneri
CBN28290
I
0.801
L898_g19014
Steinernema monticolum
L898_g19014
I
0.786
L898_g2944
Steinernema monticolum
L898_g2944
N
0.785
L892_g14817
Steinernema scapterisci
L892_g14817
I
0.784
HCOI01190000
Haemonchus contortus
HCOI01190000
I
0.783
HPLM_0000974301
Haemonchus placei
HPLM_0000974301
I
0.783
L596_g14589
Steinernema carpocapsae
L596_g14589
I
0.779
L889_g6806
Steinernema feltiae
L889_g6806
N
0.776
ANCCEY_07914
Ancylostoma ceylanicum
ANCCEY_07914
I
0.775
L889_g6803
Steinernema feltiae
L889_g6803
N
0.771
L893_g27943
Steinernema glaseri
L893_g27943
N
0.770
L893_g27935
Steinernema glaseri
L893_g27935
N
0.770
L898_g19021
Steinernema monticolum
L898_g19021
I
0.770
L889_g6798
Steinernema feltiae
L889_g6798
I
0.760
L889_g6799
Steinernema feltiae
L889_g6799
I
0.760
CBG09567
Caenorhabditis briggsae
CBG09567
I
0.759
L596_g14580
Steinernema carpocapsae
L596_g14580
N
0.758
L898_g3514
Steinernema monticolum
L898_g3514
I
0.755
L898_g19019
Steinernema monticolum
L898_g19019
I
0.754
nhr-232
Caenorhabditis elegans
WBGene00012494
D
0.750
nhr-218
Caenorhabditis elegans
WBGene00011750
I
0.750