chr4.CM0234.40.nc (Lotus japonicus)
MBD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF01429 (MBD) IPR001739 chr4.CM0234.40.nc T261693_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
chr4.CM0234.40.nc MBD 20 93

Links

Other MBD family TFs
Other Lotus japonicus TFs

62 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29841.m002855 Ricinus communis 29841.m002855 N 0.716
AMTR_s00004p00169140 Amborella trichopoda AMTR_s00004p00169140 N 0.808
Aquca_020_00103 Aquilegia coerulea Aquca_020_00103 N 0.757
MBD10 Arabidopsis thaliana AT1G15340 N 0.716
Bo8g066360 Brassica oleracea Bo8g066360 N 0.730
Bostr.7128s0147 Boechera stricta Bostr.7128s0147 N 0.716
Bra016665 Brassica rapa Bra016665 N 0.730
Cagra.2238s0088 Capsella grandiflora Cagra.2238s0088 N 0.730
Carubv10009517m.g Capsella rubella Carubv10009517m.g N 0.730
cassava13512.valid.m1 Manihot esculenta cassava13512.valid.m1 N 0.851
cassava13513.valid.m1 Manihot esculenta cassava13513.valid.m1 N 0.851
cassava6704.valid.m1 Manihot esculenta cassava6704.valid.m1 N 0.703
Ca_06682 Cicer arietinum Ca_06682 N 0.877
Ca_19192 Cicer arietinum Ca_19192 N 0.743
chr3.CM0142.530.nd Lotus japonicus chr3.CM0142.530.nd N 0.814
Ciclev10010753m.g Citrus clementina Ciclev10010753m.g N 0.828
Cla012423 Citrullus lanatus Cla012423 N 0.716
Cla012920 Citrullus lanatus Cla012920 N 0.716
Cla016961 Citrullus lanatus Cla016961 N 0.740
Cucsa.096390 Cucumis sativus Cucsa.096390 N 0.703
Cucsa.132180 Cucumis sativus Cucsa.132180 N 0.716
MBD10 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001305 N 0.716
gene31058-v1.0-hybrid Fragaria vesca gene31058-v1.0-hybrid N 0.865
GLYMA04G23780 Glycine max GLYMA04G23780 N 0.824
GLYMA04G23980 Glycine max GLYMA04G23980 N 0.838
GLYMA06G25310 Glycine max GLYMA06G25310 N 0.838
GLYMA06G30350 Glycine max GLYMA06G30350 N 0.824
GLYMA06G30590 Glycine max GLYMA06G30590 N 0.851
GLYMA13G44230 Glycine max GLYMA13G44230 N 0.808
GLYMA15G01040 Glycine max GLYMA15G01040 N 0.784
Gorai.009G016600 Gossypium raimondii Gorai.009G016600 N 0.730
Gorai.010G062800 Gossypium raimondii Gorai.010G062800 N 0.703
Gorai.011G083900 Gossypium raimondii Gorai.011G083900 N 0.703
GSMUA_Achr7G01310_001 Musa acuminata GSMUA_Achr7G01310_001 N 0.708
LPERR12G16300 Leersia perrieri LPERR12G16300 N 0.714
Lus10002168.g Linum usitatissimum Lus10002168.g N 0.742
Lus10019406.g Linum usitatissimum Lus10019406.g N 0.754
Lus10030108.g Linum usitatissimum Lus10030108.g N 0.716
Lus10043263.g Linum usitatissimum Lus10043263.g N 0.703
MDP0000152128 Malus domestica MDP0000152128 N 0.905
MDP0000248422 Malus domestica MDP0000248422 N 0.716
MDP0000375866 Malus domestica MDP0000375866 N 0.905
MDP0000574053 Malus domestica MDP0000574053 N 0.905
MTR_0339s0020 Medicago truncatula MTR_0339s0020 N 0.806
MTR_4g114770 Medicago truncatula MTR_4g114770 N 0.819
MTR_4g114785 Medicago truncatula MTR_4g114785 N 0.806
orange1.1g022412m.g Citrus sinensis orange1.1g022412m.g N 0.824
Pavir.Ca02859 Panicum virgatum Pavir.Ca02859 N 0.718
PGSC0003DMG400002913 Solanum tuberosum PGSC0003DMG400002913 N 0.811
PK04144.1 Cannabis sativa PK04144.1 N 0.851
Pm027560 Prunus mume Pm027560 N 0.890
POPTR_0018s12980 Populus trichocarpa POPTR_0018s12980 N 0.828
PRUPE_ppa008789mg Prunus persica PRUPE_ppa008789mg N 0.865
PRUPE_ppa009989mg Prunus persica PRUPE_ppa009989mg N 0.730
SapurV1A.0034s0480 Salix purpurea SapurV1A.0034s0480 N 0.797
SapurV1A.1100s0070 Salix purpurea SapurV1A.1100s0070 N 0.863
Solyc07g008170.2 Solanum lycopersicum Solyc07g008170.2 N 0.784
Solyc12g009590.1 Solanum lycopersicum Solyc12g009590.1 N 0.811
TCM_038107 Theobroma cacao TCM_038107 N 0.811
Thhalv10007967m.g Eutrema salsugineum Thhalv10007967m.g N 0.716
VIT_09s0002g06870 Vitis vinifera VIT_09s0002g06870 N 0.743
VIT_11s0016g05580 Vitis vinifera VIT_11s0016g05580 N 0.757