PGSC0003DMG400030324 (Solanum tuberosum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 PGSC0003DMG400030324 T277711_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK21687.1
M01282_2.00 		Cannabis sativa
HWAAACCYH
DRGGTTTWD		 PBM
Lambert et al.(2019)
pTH11299 		0.909 0.979
TRP2
M07092_2.00 		Arabidopsis thaliana
AAACCCTAAACCCTAAACCC
GGGTTTAGGGTTTAGGGTTT		 Dap-seq
OMalley et al.(2016)
TRP2_col_a 		0.901 0.957
TRP2
M07093_2.00 		Arabidopsis thaliana
AAACCCTAAACCCTAAACCCT
AGGGTTTAGGGTTTAGGGTTT		 Dap-seq
OMalley et al.(2016)
TRP2_colamp_a 		0.901 0.957
TRP1
M07148_2.00 		Arabidopsis thaliana
AAACCCTAAACCCTAAACCCTAA
TTAGGGTTTAGGGTTTAGGGTTT		 Dap-seq
OMalley et al.(2016)
TRP1_col 		0.891 0.957
TRP5
M01266_2.00 		Arabidopsis thaliana
NHWAAACCYH
DRGGTTTWDN		 PBM
Lambert et al.(2019)
pTH9963 		0.849 0.957
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400077968 Myb 301 351
PGSC0003DMT400077969 Myb 596 646

Links

Other Myb/SANT family TFs
Other Solanum tuberosum TFs

198 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29790.m000843 Ricinus communis 29790.m000843 I
30138.m003899 Ricinus communis 30138.m003899 I
30138.m003913 Ricinus communis 30138.m003913 I
AMTR_s00006p00250310 Amborella trichopoda AMTR_s00006p00250310 I
Aquca_002_00952 Aquilegia coerulea Aquca_002_00952 I
Aquca_006_00387 Aquilegia coerulea Aquca_006_00387 I
BIM2 Arabidopsis thaliana AT1G69010 D
BIM1 Arabidopsis thaliana AT5G08130 D
BIM3 Arabidopsis thaliana AT5G38860 D
ALC Arabidopsis thaliana AT5G67110 I
BGIOSGA022375 Oryza indica BGIOSGA022375 I
BGIOSGA028888 Oryza indica BGIOSGA028888 I
Bo2g062560 Brassica oleracea Bo2g062560 I
Bo2g161110 Brassica oleracea Bo2g161110 I
Bo3g004690 Brassica oleracea Bo3g004690 I
Bo5g020460 Brassica oleracea Bo5g020460 I
Bo6g108530 Brassica oleracea Bo6g108530 I
Bo9g174770 Brassica oleracea Bo9g174770 I
Bostr.0568s0133 Boechera stricta Bostr.0568s0133 I
Bostr.10273s0468 Boechera stricta Bostr.10273s0468 I
Bostr.13129s0152 Boechera stricta Bostr.13129s0152 I
Bra004355 Brassica rapa Bra004355 I
Bra005969 Brassica rapa Bra005969 I
Bra009322 Brassica rapa Bra009322 I
Bra012133 Brassica rapa Bra012133 I
Bra029354 Brassica rapa Bra029354 I
Bra038332 Brassica rapa Bra038332 I
BRADI3G38970 Brachypodium distachyon BRADI3G38970 I
Cagra.1157s0023 Capsella grandiflora Cagra.1157s0023 I
Cagra.1365s0019 Capsella grandiflora Cagra.1365s0019 I
Cagra.2539s0002 Capsella grandiflora Cagra.2539s0002 I
Carubv10000655m.g Capsella rubella Carubv10000655m.g I
Carubv10006445m.g Capsella rubella Carubv10006445m.g I
Carubv10020679m.g Capsella rubella Carubv10020679m.g I
Carubv10028570m.g Capsella rubella Carubv10028570m.g I
cassava14.valid.m1 Manihot esculenta cassava14.valid.m1 I
cassava15.valid.m1 Manihot esculenta cassava15.valid.m1 I
cassava29314.valid.m1 Manihot esculenta cassava29314.valid.m1 I
cassava29318.valid.m1 Manihot esculenta cassava29318.valid.m1 I
cassava43370.valid.m1 Manihot esculenta cassava43370.valid.m1 I
cassava43379.valid.m1 Manihot esculenta cassava43379.valid.m1 I
Ca_19269 Cicer arietinum Ca_19269 I
Ca_22043 Cicer arietinum Ca_22043 I
Ciclev10012135m.g Citrus clementina Ciclev10012135m.g I
Ciclev10020248m.g Citrus clementina Ciclev10020248m.g I
Ciclev10032020m.g Citrus clementina Ciclev10032020m.g I
Cla018818 Citrullus lanatus Cla018818 I
Cla022382 Citrullus lanatus Cla022382 I
Cucsa.113490 Cucumis sativus Cucsa.113490 I
Cucsa.174600 Cucumis sativus Cucsa.174600 I
Cucsa.198520 Cucumis sativus Cucsa.198520 I
Cucsa.328060 Cucumis sativus Cucsa.328060 I
estExt_fgenesh1_pg.C_2110039 Physcomitrella patens estExt_fgenesh1_pg.C_2110039 I
Eucgr.B00645 Eucalyptus grandis Eucgr.B00645 I
Eucgr.B03113 Eucalyptus grandis Eucgr.B03113 I
Eucgr.I02069 Eucalyptus grandis Eucgr.I02069 I
evm.TU.supercontig_289.6 Carica papaya evm.TU.supercontig_289.6 I
evm.TU.supercontig_3.225 Carica papaya evm.TU.supercontig_3.225 I
fgenesh1_pg.scaffold_37000071 Physcomitrella patens fgenesh1_pg.scaffold_37000071 D
BIM2 Arabidopsis lyrata fgenesh2_kg.2__1159__AT1G69010.1 I
ALC Arabidopsis lyrata fgenesh2_kg.8__2705__AT5G67110.1 I
gene04534-v1.0-hybrid Fragaria vesca gene04534-v1.0-hybrid I
gene09125-v1.0-hybrid Fragaria vesca gene09125-v1.0-hybrid I
gene26139-v1.0-hybrid Fragaria vesca gene26139-v1.0-hybrid I
GLYMA01G09010 Glycine max GLYMA01G09010 I
GLYMA02G13670 Glycine max GLYMA02G13670 I
GLYMA05G07490 Glycine max GLYMA05G07490 I
GLYMA08G28010 Glycine max GLYMA08G28010 I
GLYMA17G08980 Glycine max GLYMA17G08980 I
Gorai.001G197500 Gossypium raimondii Gorai.001G197500 I
Gorai.006G269200 Gossypium raimondii Gorai.006G269200 I
Gorai.007G040600 Gossypium raimondii Gorai.007G040600 I
Gorai.009G327300 Gossypium raimondii Gorai.009G327300 I
Gorai.013G098000 Gossypium raimondii Gorai.013G098000 I
GRMZM2G017349 Zea mays GRMZM2G017349 I
GRMZM2G172795 Zea mays GRMZM2G172795 I
GSMUA_Achr2G05450_001 Musa acuminata GSMUA_Achr2G05450_001 I
GSMUA_Achr4G19530_001 Musa acuminata GSMUA_Achr4G19530_001 I
GSMUA_Achr9G19110_001 Musa acuminata GSMUA_Achr9G19110_001 I
GSMUA_Achr9G28050_001 Musa acuminata GSMUA_Achr9G28050_001 I
gw1.90.123.1 Physcomitrella patens gw1.90.123.1 I
LPERR04G17400 Leersia perrieri LPERR04G17400 I
LPERR06G03910 Leersia perrieri LPERR06G03910 I
Lus10004630.g Linum usitatissimum Lus10004630.g I
Lus10026684.g Linum usitatissimum Lus10026684.g I
Lus10034358.g Linum usitatissimum Lus10034358.g I
MDP0000261293 Malus domestica MDP0000261293 I
mgf001137m Mimulus guttatus mgf001137m I
mgf005849m Mimulus guttatus mgf005849m I
mgf011829m Mimulus guttatus mgf011829m I
mgf013208m Mimulus guttatus mgf013208m I
MTR_1g019240 Medicago truncatula MTR_1g019240 I
MTR_4g110040 Medicago truncatula MTR_4g110040 I
MTR_5g048350 Medicago truncatula MTR_5g048350 I
MTR_7g017320 Medicago truncatula MTR_7g017320 I
OB08G25940 Oryza brachyantha OB08G25940 I
OBART06G04330 Oryza barthii OBART06G04330 I
OGLUM06G04430 Oryza glumaepatula OGLUM06G04430 I
OGLUM08G19830 Oryza glumaepatula OGLUM08G19830 I
OLONG_003583 Oryza longistaminata OLONG_003583 I
OMERI06G05430 Oryza meridionalis OMERI06G05430 I
ONIVA06G05510 Oryza nivara ONIVA06G05510 I
ONIVA08G20800 Oryza nivara ONIVA08G20800 I
OPUNC08G16820 Oryza punctata OPUNC08G16820 I
orange1.1g019485m.g Citrus sinensis orange1.1g019485m.g I
orange1.1g019960m.g Citrus sinensis orange1.1g019960m.g I
orange1.1g038451m.g Citrus sinensis orange1.1g038451m.g I
ORGLA06G0039900 Oryza glaberrima ORGLA06G0039900 I
ORGLA08G0164200 Oryza glaberrima ORGLA08G0164200 I
ORUFI06G04330 Oryza rufipogon ORUFI06G04330 I
ORUFI08G21030 Oryza rufipogon ORUFI08G21030 I
OS08G0490000 Oryza sativa OS08G0490000 I
Pavir.Fb01833 Panicum virgatum Pavir.Fb01833 I
Pavir.J15575 Panicum virgatum Pavir.J15575 I
Pavir.J38250 Panicum virgatum Pavir.J38250 I
Pavir.J38910 Panicum virgatum Pavir.J38910 I
PGSC0003DMG400001919 Solanum tuberosum PGSC0003DMG400001919 I
PGSC0003DMG400019654 Solanum tuberosum PGSC0003DMG400019654 I
PGSC0003DMG401007955 Solanum tuberosum PGSC0003DMG401007955 I
PK00238.1 Cannabis sativa PK00238.1 I
PK01364.1 Cannabis sativa PK01364.1 I
PK10562.1 Cannabis sativa PK10562.1 I
POPTR_0004s11180 Populus trichocarpa POPTR_0004s11180 I
POPTR_0008s11120 Populus trichocarpa POPTR_0008s11120 I
POPTR_0010s14740 Populus trichocarpa POPTR_0010s14740 I
POPTR_0012s06650 Populus trichocarpa POPTR_0012s06650 I
POPTR_0015s03550 Populus trichocarpa POPTR_0015s03550 I
POPTR_0017s13610 Populus trichocarpa POPTR_0017s13610 I
PRUPE_ppa003436mg Prunus persica PRUPE_ppa003436mg I
PRUPE_ppa008387mg Prunus persica PRUPE_ppa008387mg I
PRUPE_ppa008856mg Prunus persica PRUPE_ppa008856mg I
SapurV1A.0060s0510 Salix purpurea SapurV1A.0060s0510 I
SapurV1A.0084s0570 Salix purpurea SapurV1A.0084s0570 I
SapurV1A.0178s0150 Salix purpurea SapurV1A.0178s0150 I
SapurV1A.0274s0040 Salix purpurea SapurV1A.0274s0040 I
SapurV1A.0868s0010 Salix purpurea SapurV1A.0868s0010 I
SapurV1A.2517s0020 Salix purpurea SapurV1A.2517s0020 I
Sb06g025040 Sorghum bicolor Sb06g025040 I
Sb06g025060 Sorghum bicolor Sb06g025060 I
Sb07g028860 Sorghum bicolor Sb07g028860 I
Sb10g004500 Sorghum bicolor Sb10g004500 I
BIM1 Arabidopsis lyrata scaffold_600819.1 I
BIM3 Arabidopsis lyrata scaffold_704174.1 I
SELMODRAFT_451475 Selaginella moellendorffii SELMODRAFT_451475 I
SELMODRAFT_451477 Selaginella moellendorffii SELMODRAFT_451477 I
Si000845m.g Setaria italica Si000845m.g I
Si012401m.g Setaria italica Si012401m.g I
Si013622m.g Setaria italica Si013622m.g I
Solyc03g114720.2 Solanum lycopersicum Solyc03g114720.2 I
Solyc04g005280.2 Solanum lycopersicum Solyc04g005280.2 I
Solyc05g011810.2 Solanum lycopersicum Solyc05g011810.2 I
Solyc06g069370.2 Solanum lycopersicum Solyc06g069370.2 I
TCM_011433 Theobroma cacao TCM_011433 I
TCM_014392 Theobroma cacao TCM_014392 I
TCM_019015 Theobroma cacao TCM_019015 I
Thhalv10004889m.g Eutrema salsugineum Thhalv10004889m.g I
Thhalv10013181m.g Eutrema salsugineum Thhalv10013181m.g I
Thhalv10018889m.g Eutrema salsugineum Thhalv10018889m.g I
Thhalv10027863m.g Eutrema salsugineum Thhalv10027863m.g I
Traes_7DL_04FC0BF21 Triticum aestivum Traes_7DL_04FC0BF21 N
BIM2 Vitis vinifera VIT_01s0010g00540 I
BIM3 Vitis vinifera VIT_14s0083g00930 I
BIM1 Vitis vinifera VIT_17s0000g04790 I