Gorai.010G110000 (Gossypium raimondii)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Gorai.010G110000 T287743_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q948S5_TOBAC
M11074_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBA2_01 		0.835 0.914
PC-MYB1
M07110_2.00 		Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN		 Dap-seq
OMalley et al.(2016)
MYB3R1_col_a 		0.800 0.856
PC-MYB1
M07111_2.00 		Arabidopsis thaliana
DWHNTDRCCGTTR
YAACGGYHANDWH		 Dap-seq
OMalley et al.(2016)
MYB3R1_colamp_a 		0.800 0.856
MYB3R4
M07125_2.00 		Arabidopsis thaliana
NDWWNTDRCCGTTRN
NYAACGGYHANWWHN		 Dap-seq
OMalley et al.(2016)
MYB3R4_col_a 		0.787 0.849
PK12011.1
M01279_2.00 		Cannabis sativa
HAACGGHHNN
NNDDCCGTTD		 PBM
Lambert et al.(2019)
pTH11423 		0.779 0.878
Q948S4_TOBAC
M11073_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBB_01 		0.706 0.748
Q948S6_TOBAC
M11075_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$MYBA1_01 		0.664 0.791
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.010G110000.1 Myb 39 85
Gorai.010G110000.1 Myb 91 138
Gorai.010G110000.1 Myb 144 188
Gorai.010G110000.2 Myb 39 85
Gorai.010G110000.2 Myb 91 137
Gorai.010G110000.2 Myb 143 187

Links

Other Myb/SANT family TFs
Other Gossypium raimondii TFs

142 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29681.m001315 Ricinus communis 29681.m001315 N
30147.m013937 Ricinus communis 30147.m013937 I
AMTR_s00001p00272410 Amborella trichopoda AMTR_s00001p00272410 N
AMTR_s00096p00076220 Amborella trichopoda AMTR_s00096p00076220 I
Aquca_045_00020 Aquilegia coerulea Aquca_045_00020 I
MYB64 Arabidopsis thaliana AT5G11050 N
BGIOSGA022369 Oryza indica BGIOSGA022369 I
Bo2g028290 Brassica oleracea Bo2g028290 I
Bo3g018490 Brassica oleracea Bo3g018490 I
Bostr.20821s0001 Boechera stricta Bostr.20821s0001 N
Bra006744 Brassica rapa Bra006744 I
Bra020346 Brassica rapa Bra020346 I
Cagra.1398s0045 Capsella grandiflora Cagra.1398s0045 N
Carubv10003695m.g Capsella rubella Carubv10003695m.g N
cassava19706.m1 Manihot esculenta cassava19706.m1 I
cassava26507.m1 Manihot esculenta cassava26507.m1 N
cassava26674.m1 Manihot esculenta cassava26674.m1 N
cassava33974.m1 Manihot esculenta cassava33974.m1 I
cassava9008.m1 Manihot esculenta cassava9008.m1 I
Ca_17294 Cicer arietinum Ca_17294 I
Ca_19427 Cicer arietinum Ca_19427 I
chr4.CM0042.120.nd Lotus japonicus chr4.CM0042.120.nd N
Ciclev10024427m.g Citrus clementina Ciclev10024427m.g I
Ciclev10030254m.g Citrus clementina Ciclev10030254m.g N
Cla008304 Citrullus lanatus Cla008304 N
Cla019490 Citrullus lanatus Cla019490 I
Cucsa.146980 Cucumis sativus Cucsa.146980 N
Cucsa.196850 Cucumis sativus Cucsa.196850 I
Eucgr.B00301 Eucalyptus grandis Eucgr.B00301 I
evm.TU.supercontig_112.44 Carica papaya evm.TU.supercontig_112.44 N
evm.TU.supercontig_76.38 Carica papaya evm.TU.supercontig_76.38 I
MYB64 Arabidopsis lyrata fgenesh2_kg.6__1071__AT5G11050.1 N
gene08006-v1.0-hybrid Fragaria vesca gene08006-v1.0-hybrid I
gene32198-v1.0-hybrid Fragaria vesca gene32198-v1.0-hybrid I
GLYMA05G02300 Glycine max GLYMA05G02300 I
GLYMA06G19280 Glycine max GLYMA06G19280 I
GLYMA18G07360 Glycine max GLYMA18G07360 N
Gorai.001G115300 Gossypium raimondii Gorai.001G115300 N
Gorai.008G295800 Gossypium raimondii Gorai.008G295800 I
Gorai.011G044100 Gossypium raimondii Gorai.011G044100 N
GSMUA_Achr6G33700_001 Musa acuminata GSMUA_Achr6G33700_001 N
GSMUA_Achr8G02290_001 Musa acuminata GSMUA_Achr8G02290_001 N
LPERR06G03780 Leersia perrieri LPERR06G03780 I
Lus10018220.g Linum usitatissimum Lus10018220.g N
Lus10040684.g Linum usitatissimum Lus10040684.g N
Lus10042111.g Linum usitatissimum Lus10042111.g I
MDP0000199939 Malus domestica MDP0000199939 I
MDP0000215359 Malus domestica MDP0000215359 I
MDP0000319656 Malus domestica MDP0000319656 I
mg025334m Mimulus guttatus mg025334m I
mgf023372m Mimulus guttatus mgf023372m I
mgf024290m Mimulus guttatus mgf024290m I
MTR_3g077650 Medicago truncatula MTR_3g077650 I
MTR_3g463400 Medicago truncatula MTR_3g463400 N
MTR_5g049190 Medicago truncatula MTR_5g049190 I
MTR_5g070020 Medicago truncatula MTR_5g070020 N
OB06G13860 Oryza brachyantha OB06G13860 I
OBART06G04170 Oryza barthii OBART06G04170 I
OGLUM06G04280 Oryza glumaepatula OGLUM06G04280 I
OLONG_010000 Oryza longistaminata OLONG_010000 I
OMERI06G04840 Oryza meridionalis OMERI06G04840 I
ONIVA06G05390 Oryza nivara ONIVA06G05390 I
OPUNC06G03990 Oryza punctata OPUNC06G03990 I
orange1.1g046581m.g Citrus sinensis orange1.1g046581m.g N
orange1.1g046859m.g Citrus sinensis orange1.1g046859m.g I
ORGLA06G0038500 Oryza glaberrima ORGLA06G0038500 I
ORUFI06G04170 Oryza rufipogon ORUFI06G04170 I
OS06G0162700 Oryza sativa OS06G0162700 I
Pavir.J02497 Panicum virgatum Pavir.J02497 I
Pavir.J02718 Panicum virgatum Pavir.J02718 I
PDK_20s1782461g001 Phoenix dactylifera PDK_20s1782461g001 N
PGSC0003DMG400036895 Solanum tuberosum PGSC0003DMG400036895 I
PGSC0003DMG400044141 Solanum tuberosum PGSC0003DMG400044141 N
Pm000541 Prunus mume Pm000541 I
Pm015681 Prunus mume Pm015681 I
Pm024743 Prunus mume Pm024743 I
POPTR_0001s25710 Populus trichocarpa POPTR_0001s25710 N
MYB118 Populus trichocarpa POPTR_0001s35140 I
POPTR_0005s12050 Populus trichocarpa POPTR_0005s12050 I
POPTR_0009s04870 Populus trichocarpa POPTR_0009s04870 N
POPTR_0012s08360 Populus trichocarpa POPTR_0012s08360 I
POPTR_0015s08880 Populus trichocarpa POPTR_0015s08880 I
PRUPE_ppa018123mg Prunus persica PRUPE_ppa018123mg I
PRUPE_ppa019507mg Prunus persica PRUPE_ppa019507mg I
PRUPE_ppa026791mg Prunus persica PRUPE_ppa026791mg I
SapurV1A.0041s0840 Salix purpurea SapurV1A.0041s0840 N
SapurV1A.0396s0170 Salix purpurea SapurV1A.0396s0170 I
SapurV1A.0571s0110 Salix purpurea SapurV1A.0571s0110 I
SapurV1A.0772s0150 Salix purpurea SapurV1A.0772s0150 N
SapurV1A.2163s0040 Salix purpurea SapurV1A.2163s0040 I
Solyc06g071520.1 Solanum lycopersicum Solyc06g071520.1 I
Solyc06g076840.1 Solanum lycopersicum Solyc06g076840.1 N
TCM_012087 Theobroma cacao TCM_012087 I
TCM_041651 Theobroma cacao TCM_041651 N
Thhalv10015404m.g Eutrema salsugineum Thhalv10015404m.g N
Thhalv10016057m.g Eutrema salsugineum Thhalv10016057m.g I
Thhalv10027294m.g Eutrema salsugineum Thhalv10027294m.g N
MYB98 Vitis vinifera VIT_17s0000g08550 I