L798_15745 (Zootermopsis nevadensis)
Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00292 (PAX) IPR001523 L798_15745 T311958_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Poxn
M03946_2.00 		Drosophila melanogaster
DGCGTGACSGTCACGSY
RSCGTGACSGTCACGCH		 SELEX
Nitta et al.(2015)
Poxn_1 		0.822 0.822
Poxn
M03947_2.00 		Drosophila melanogaster
RSCGKGACSGTTMCGSW
WSCGKAACSGTCMCGSY		 SELEX
Nitta et al.(2015)
Poxn_2 		0.822 0.822
Poxn
M03948_2.00 		Drosophila melanogaster
NCGTTCCGGAACGD
HCGTTCCGGAACGN		 SELEX
Nitta et al.(2015)
Poxn_3 		0.822 0.822
Poxn
M06437_2.00 		Drosophila melanogaster
RSCGTGACG
CGTCACGSY		 B1H
Zhu et al.(2011)
Poxn_SOLEXA_5_FBgn0003130 		0.822 0.822
pax2b
M02425_2.00 		Danio rerio
HVNYSRNSCR
YGSNYSRNBD		 PBM
Weirauch et al.(2014)
pTH8679 		0.700 0.700
Pax5B
M01301_2.00 		Gallus gallus
NSNDTNNNN
NNNNAHNSN		 PBM
Lambert et al.(2019)
pTH9781 		0.700 0.700
pax2
M02428_2.00 		Xenopus tropicalis
NNNRNBCRNN
NNYGVNYNNN		 PBM
Weirauch et al.(2014)
pTH8556 		0.700 0.700
PAX5
M03443_2.00 		Homo sapiens
RNBYANYSAWSCGTRACN
NGTYACGSWTSRNTRVNY		 SELEX
Jolma et al.(2013)
PAX5_1 		0.700 0.700
PAX5
M08160_2.00 		Homo sapiens
RDGCGTGACCNN
NNGGTCACGCHY		 ChIP-seq
Mathelier et al.(2014)
MA0014.3 		0.700 0.700
PAX5
M07995_2.00 		Homo sapiens
BCAVYSRDSCRKRRC
GYYMYGSHYSRBTGV		 ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5C20_HudsonAlpha 		0.700 0.700
PAX5
M07996_2.00 		Homo sapiens
BCASYSRDSCRTRAC
GTYAYGSHYSRSTGV		 ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5N19_HudsonAlpha 		0.700 0.700
PAX5
M07997_2.00 		Homo sapiens
CASYSRDSCRKRACN
NGTYMYGSHYSRSTG		 ChIP-seq
Gerstein et al.(2012)
GM12891_PAX5C20_HudsonAlpha 		0.700 0.700
PAX5
M07998_2.00 		Homo sapiens
BCASYSRDSCGKRRC
GYYMCGSHYSRSTGV		 ChIP-seq
Gerstein et al.(2012)
GM12892_PAX5C20_HudsonAlpha 		0.700 0.700
PAX5
M08227_2.00 		Homo sapiens
BCANYSRDGCGTRAM
KTYACGCHYSRNTGV		 ChIP-seq
Contrino et al.(2012)
Mv108 		0.700 0.700
PAX5
M08228_2.00 		Homo sapiens
AGCGTGRCYG
CRGYCACGCT		 ChIP-seq
Contrino et al.(2012)
Mv109 		0.700 0.700
PAX5
M09341_2.00 		Homo sapiens
SNVDGNKCARCVRAGCRDGAC
GTCHYGCTYBGYTGMNCHBNS		 Misc
Kulakovskiy et al.(2013)
PAX5_HUMAN.H11MO.0.A 		0.700 0.700
Pax5
M09342_2.00 		Mus musculus
VDRNBCAVYVRDSCRKRRM
KYYMYGSHYBRBTGVNYHB		 Misc
Kulakovskiy et al.(2013)
PAX5_MOUSE.H11MO.0.A 		0.700 0.700
PAX5
M09622_2.00 		Homo sapiens
BCASYSRDSCRTGRMN
NKYCAYGSHYSRSTGV		 Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_1 		0.700 0.700
PAX5
M09623_2.00 		Homo sapiens
BCABNVRSCGTGAC
GTCACGSYBNVTGV		 Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_2 		0.700 0.700
PAX5
M11208_2.00 		Homo sapiens
BCNNNRNKCANBGNWGNRKRGMSRSHNB
VNDSYSKCYMYNCWNCVNTGMNYNNNGV		 Transfac
Matys et al.(2006)
V$PAX5_01 		0.700 0.700
PAX5
M11209_2.00 		Homo sapiens
VRHVDGDNDBBTNRAGCGKRACVRYNVH
DBNRYBGTYMCGCTYNAVVHNHCHBDYB		 Transfac
Matys et al.(2006)
V$PAX5_02 		0.700 0.700
PAX5
M11210_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_06 		0.700 0.700
PAX5
M11211_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_07 		0.700 0.700
PAX5
M11212_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$PAX5_Q6 		0.700 0.700
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
KDR23176 Paired box 389 478

Links

Other Paired box family TFs
Other Zootermopsis nevadensis TFs

113 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29634.m002156 Ricinus communis 29634.m002156 N
Aquca_010_00478 Aquilegia coerulea Aquca_010_00478 N
SCL4 Arabidopsis thaliana AT5G66770 N
Bostr.0568s0096 Boechera stricta Bostr.0568s0096 N
cassava18797.valid.m1 Manihot esculenta cassava18797.valid.m1 N
chr3.CM0127.460.nc Lotus japonicus chr3.CM0127.460.nc N
Cla014744 Citrullus lanatus Cla014744 N
Cucsa.127390 Cucumis sativus Cucsa.127390 N
Cucsa.201400 Cucumis sativus Cucsa.201400 N
Eucgr.I02451 Eucalyptus grandis Eucgr.I02451 N
evm.TU.supercontig_6.108 Carica papaya evm.TU.supercontig_6.108 N
gene14780-v1.0-hybrid Fragaria vesca gene14780-v1.0-hybrid N
Gorai.003G015400 Gossypium raimondii Gorai.003G015400 N
Gorai.008G068100 Gossypium raimondii Gorai.008G068100 N
Lus10024014.g Linum usitatissimum Lus10024014.g N
Lus10041740.g Linum usitatissimum Lus10041740.g N
MDP0000575908 Malus domestica MDP0000575908 N
PGSC0003DMG400014900 Solanum tuberosum PGSC0003DMG400014900 N
PK13108.1 Cannabis sativa PK13108.1 N
Pm026616 Prunus mume Pm026616 N
POPTR_0005s12520 Populus trichocarpa POPTR_0005s12520 N
POPTR_0007s12760 Populus trichocarpa POPTR_0007s12760 N
PRUPE_ppa003124mg Prunus persica PRUPE_ppa003124mg N
SapurV1A.0254s0130 Salix purpurea SapurV1A.0254s0130 N
SapurV1A.1131s0040 Salix purpurea SapurV1A.1131s0040 N
SapurV1A.4211s0010 Salix purpurea SapurV1A.4211s0010 N
Solyc02g085340.1 Solanum lycopersicum Solyc02g085340.1 N
TCM_000399 Theobroma cacao TCM_000399 N
Thhalv10003860m.g Eutrema salsugineum Thhalv10003860m.g N
VIT_04s0023g01660 Vitis vinifera VIT_04s0023g01660 N