ONIVA01G25660 (Oryza nivara)
TCR/CxC

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03638 (TCR) IPR005172 ONIVA01G25660 T345634_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT2G20110
M02520_2.00 		Arabidopsis thaliana
DTTTAAAH
DTTTAAAH		 PBM
Weirauch et al.(2014)
pTH7914 		0.672 0.187
TCX5
M02523_2.00 		Arabidopsis thaliana
NRTTCAAAYN
NRTTTGAAYN		 PBM
Weirauch et al.(2014)
pTH8164 		0.672 0.187
AT5G25790
M01319_2.00 		Arabidopsis thaliana
NHYRAAHN
NDTTYRDN		 PBM
Lambert et al.(2019)
pTH11533 		0.672 0.187
fgeneshCV_pg.C_scaffold_18000164
M02534_2.00 		Chlorella vulgaris
NNNNDYRAAH
DTTYRHNNNN		 PBM
Weirauch et al.(2014)
pTH9252 		0.672 0.187
AT2G20110
M07295_2.00 		Arabidopsis thaliana
WWHWAADATTYAAAW
WTTTRAATHTTWDWW		 Dap-seq
OMalley et al.(2016)
AT2G20110_col_a 		0.672 0.187
AT2G20110
M07296_2.00 		Arabidopsis thaliana
WWHNAAATTYAAAHN
NDTTTRAATTTNDWW		 Dap-seq
OMalley et al.(2016)
AT2G20110_colamp_a 		0.672 0.187
lin54
M02526_2.00 		Danio rerio
NHTYRAAH
DTTYRADN		 PBM
Weirauch et al.(2014)
pTH8399 		0.672 0.173
fgenesh1_pg.C_Chr_09.0001000301
M02533_2.00 		Ostreococcus tauri
NNNNNRHNN
NNDYNNNNN		 PBM
Weirauch et al.(2014)
pTH9457 		0.672 0.173
gw1.20.00.89.1
M02535_2.00 		Ostreococcus tauri
WNYWBVWRNW
WNYWBVWRNW		 PBM
Weirauch et al.(2014)
pTH9647 		0.672 0.169
ENSTSYG00000005291
M02528_2.00 		Tarsius syrichta
NNWDHDHWNN
NNWDHDHWNN		 PBM
Weirauch et al.(2014)
pTH9366 		0.672 0.162
BGIBMGA008956
M02524_2.00 		Bombyx mori
AATTTAAAW
WTTTAAATT		 PBM
Weirauch et al.(2014)
pTH9238 		0.672 0.160
LIN54
M02527_2.00 		Gallus gallus
NRTTYAAAH
DTTTRAAYN		 PBM
Weirauch et al.(2014)
pTH8566 		0.672 0.160
GE12548
M02529_2.00 		Drosophila yakuba
DTTYAAAY
RTTTRAAH		 PBM
Weirauch et al.(2014)
pTH9262 		0.672 0.160
GSPATT00010696001
M02530_2.00 		Paramecium tetraurelia
NNBRAAHN
NDTTYVNN		 PBM
Weirauch et al.(2014)
pTH8720 		0.672 0.160
NEMVEDRAFT_v1g111410
M01320_2.00 		Nematostella vectensis
NNNNYRWRN
NYWYRNNNN		 PBM
Lambert et al.(2019)
pTH9771 		0.672 0.160
SPU_025306
M02531_2.00 		Strongylocentrotus purpuratus
NNNNWYRAAH
DTTYRWNNNN		 PBM
Weirauch et al.(2014)
pTH9286 		0.672 0.160
XP_002124866.1
M01321_2.00 		Ciona intestinalis
NDTTYRAAN
NTTYRAAHN		 PBM
Lambert et al.(2019)
pTH9835 		0.672 0.160
TSO1
M07299_2.00 		Arabidopsis thaliana
WWWTWDAAATTYAAA
TTTRAATTTHWAWWW		 Dap-seq
OMalley et al.(2016)
TSO1_col_a 		0.672 0.160
TCX4
M02521_2.00 		Arabidopsis thaliana
DWTTYRAAWH
DWTTYRAAWH		 PBM
Weirauch et al.(2014)
pTH7573 		0.672 0.158
TCX3
M01087_2.00 		Arabidopsis thaliana
NNDTTYAAAH
DTTTRAAHNN		 PBM
Sullivan et al.(2014)
pTH7218 		0.672 0.158
TCX3
M02522_2.00 		Arabidopsis thaliana
WTTYAAAH
DTTTRAAW		 PBM
Weirauch et al.(2014)
pTH7421 		0.672 0.158
BRADI1G55710
M02525_2.00 		Brachypodium distachyon
NVTBYRVABN
NVTBYRVABN		 PBM
Weirauch et al.(2014)
pTH9241 		0.672 0.158
PK22848.1
M02532_2.00 		Cannabis sativa
NNNYNAAATTTNN
NNAAATTTNRNNN		 PBM
Weirauch et al.(2014)
pTH9724 		0.672 0.158
TCX3
M07297_2.00 		Arabidopsis thaliana
DWTTYRAAWTTBAAW
WTTVAAATTYRAAWH		 Dap-seq
OMalley et al.(2016)
SOL1_colamp_a 		0.672 0.158
TCX3
M07298_2.00 		Arabidopsis thaliana
WTWWAAAATTYAAAW
WTTTRAATTTTWWAW		 Dap-seq
OMalley et al.(2016)
SOL1_col 		0.672 0.158
TCX2
M07300_2.00 		Arabidopsis thaliana
WWTYVAAATTYRAAW
WTTYRAATTTBRAWW		 Dap-seq
OMalley et al.(2016)
TCX2_col_a 		0.672 0.158
TCX2
M07301_2.00 		Arabidopsis thaliana
TTYVAAATTYRAAW
WTTYRAATTTBRAA		 Dap-seq
OMalley et al.(2016)
TCX2_colamp_a 		0.672 0.158
PK27683.1
M01322_2.00 		Cannabis sativa
NDTTYAAAH
DTTTRAAHN		 PBM
Lambert et al.(2019)
pTH11347 		0.672 0.149
For this family, TFs with SR scores > 0.660 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ONIVA01G25660.1 TCR/CxC 79 102
ONIVA01G25660.2 TCR/CxC 79 102
ONIVA01G25660.3 TCR/CxC 47 70

Links

Other TCR/CxC family TFs
Other Oryza nivara TFs

1214 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AAEL013896 Aedes aegypti AAEL013896 I 0.000
AAH84196 Xenopus laevis AAH84196 I 0.000
AALB009485 Anopheles albimanus AALB009485 I 0.000
AARA004719 Anopheles arabiensis AARA004719 I 0.000
AATE010695 Anopheles atroparvus AATE010695 I 0.000
ACHR000067 Anopheles christyi ACHR000067 I 0.000
ACOC_0000990601 Angiostrongylus costaricensis ACOC_0000990601 N 0.000
ACOM037505 Anopheles coluzzii ACOM037505 I 0.000
ACUA025512 Anopheles culicifacies ACUA025512 I 0.000
ACYPI000365 Acyrthosiphon pisum ACYPI000365 I 0.000
ACYPI003759 Acyrthosiphon pisum ACYPI003759 I 0.000
ADAC007516 Anopheles darlingi ADAC007516 I 0.000
ADIR002761 Anopheles dirus ADIR002761 I 0.000
AEPI002385 Anopheles epiroticus AEPI002385 I 0.000
AFAF011208 Anopheles farauti AFAF011208 I 0.000
Afo_R008709 Aptenodytes forsteri Afo_R008709 I 0.000
AFUN009864 Anopheles funestus AFUN009864 I 0.000
AGAP002902 Anopheles gambiae AGAP002902 I 0.000
Alligator_sinensis_CCG008910.1 Alligator sinensis Alligator_sinensis_CCG008910.1 I 0.000
AMAM019778 Anopheles maculatus AMAM019778 I 0.000
AMEM015931 Anopheles merus AMEM015931 I 0.000
AMIN000723 Anopheles minimus AMIN000723 I 0.000
ANCCEY_04158 Ancylostoma ceylanicum ANCCEY_04158 N 0.000
AQUA009305 Anopheles quadriannulatus AQUA009305 I 0.000
ASIM_0001604001 Anisakis simplex ASIM_0001604001 I 0.000
ASTEI00079 Anopheles stephensi ASTEI00079 I 0.000
ASU_13433 Ascaris suum ASU_13433 I 0.000
BGIBMGA010110 Bombyx mori BGIBMGA010110 I 0.000
Bm3575 Brugia malayi Bm3575 I 0.000
Brh_R010414 Buceros rhinoceros Brh_R010414 I 0.000
BTMF_0000404601 Brugia timori BTMF_0000404601 I 0.000
CapteG179368 Capitella teleta CapteG179368 I 0.000
Cflo_07183--XP_392838.3_APIME Camponotus floridanus Cflo_07183--XP_392838.3_APIME I 0.000
CLEC002594 Cimex lectularius CLEC002594 I 0.000
Cmyd_10005540 Chelonia mydas Cmyd_10005540 I 0.000
CPIJ002563 Culex quinquefasciatus CPIJ002563 I 0.000
CpipJ_CPIJ002563 Culex pipiens CpipJ_CPIJ002563 I 0.000
D917_09719 Trichinella nativa D917_09719 I 0.000
DAPPUDRAFT_304115 Daphnia pulex DAPPUDRAFT_304115 I 0.000
EEL_0000707501 Elaeophora elaphi EEL_0000707501 I 0.000
EFV62078 Trichinella spiralis EFV62078 I 0.000
SMAD4 Anolis carolinensis ENSACAG00000010186 I 0.000
ENSAMEG00000002899 Ailuropoda melanoleuca ENSAMEG00000002899 I 0.000
ENSAMXG00000019219 Astyanax mexicanus ENSAMXG00000019219 I 0.000
ENSAPLG00000003924 Anas platyrhynchos ENSAPLG00000003924 I 0.000
SMAD4 Bos taurus ENSBTAG00000006919 I 0.000
SMAD4 Canis familiaris ENSCAFG00000000164 I 0.000
SMAD4 Choloepus hoffmanni ENSCHOG00000000860 I 0.000
SMAD4 Callithrix jacchus ENSCJAG00000001910 I 0.000
SMAD4 Cavia porcellus ENSCPOG00000006470 I 0.000
ENSCSAG00000018094 Chlorocebus sabaeus ENSCSAG00000018094 I 0.000
SMAD4 Danio rerio ENSDARG00000012649 I 0.000
smad4a Danio rerio ENSDARG00000075226 I 0.000
SMAD4 Dasypus novemcinctus ENSDNOG00000005063 I 0.000
SMAD4 Equus caballus ENSECAG00000017857 I 0.000
SMAD4 Echinops telfairi ENSETEG00000007750 I 0.000
SMAD4 Felis catus ENSFCAG00000005257 I 0.000
SMAD4 Homo sapiens ENSG00000141646 D 0.000
ENSGACG00000016858 Gasterosteus aculeatus ENSGACG00000016858 I 0.000
SMAD4 Gorilla gorilla ENSGGOG00000013662 I 0.000
SMAD4 Loxodonta africana ENSLAFG00000012595 I 0.000
SMAD4 Myotis lucifugus ENSMLUG00000013944 I 0.000
SMAD4 Macaca mulatta ENSMMUG00000018334 I 0.000
SMAD4 Monodelphis domestica ENSMODG00000010995 I 0.000
ENSMPUG00000008776 Mustela putorius furo ENSMPUG00000008776 I 0.000
Smad4 Mus musculus ENSMUSG00000024515 D 0.000
ENSNLEG00000011859 Nomascus leucogenys ENSNLEG00000011859 I 0.000
SMAD4 Ornithorhynchus anatinus ENSOANG00000008117 I 0.000
ENSOANG00000030959 Ornithorhynchus anatinus ENSOANG00000030959 I 0.000
ENSOARG00000004662 Ovis aries ENSOARG00000004662 I 0.000
SMAD4 Oryctolagus cuniculus ENSOCUG00000003929 I 0.000
SMAD4 Otolemur garnettii ENSOGAG00000012081 I 0.000
ENSONIG00000014036 Oreochromis niloticus ENSONIG00000014036 I 0.000
SMAD4 Ochotona princeps ENSOPRG00000013601 I 0.000
smad4a Oryzias latipes ENSORLG00000005020 I 0.000
SMAD4 Oryzias latipes ENSORLG00000007703 I 0.000
ENSP00000341551-D1 Bos grunniens ENSP00000341551-D1 I 0.000
ENSP00000381452 Macaca fascicularis ENSP00000381452 I 0.000
ENSPANG00000024703 Papio anubis ENSPANG00000024703 I 0.000
ENSPFOG00000018987 Poecilia formosa ENSPFOG00000018987 I 0.000
ENSPFOG00000019807 Poecilia formosa ENSPFOG00000019807 I 0.000
ENSPFOG00000019867 Poecilia formosa ENSPFOG00000019867 I 0.000
ENSPMAG00000008404 Petromyzon marinus ENSPMAG00000008404 I 0.000
ENSPPYG00000009165 Pongo abelii ENSPPYG00000009165 I 0.000
ENSPSIG00000014614 Pelodiscus sinensis ENSPSIG00000014614 I 0.000
SMAD4 Pan troglodytes ENSPTRG00000010028 I 0.000
Smad4 Rattus norvegicus ENSRNOG00000051965 I 0.000
ENSSHAG00000010344 Sarcophilus harrisii ENSSHAG00000010344 I 0.000
SMAD4 Sus scrofa ENSSSCG00000004524 I 0.000
ENSSTOG00000028580 Ictidomys tridecemlineatus ENSSTOG00000028580 I 0.000
SMAD4 Tupaia belangeri ENSTBEG00000014105 I 0.000
gb:cr929477 Tetraodon nigroviridis ENSTNIG00000003193 I 0.000
SMAD4 Tetraodon nigroviridis ENSTNIG00000009050 I 0.000
gb:cr929477 Takifugu rubripes ENSTRUG00000011769 I 0.000
SMAD4 Takifugu rubripes ENSTRUG00000014045 I 0.000
ENSTSYG00000009792 Tarsius syrichta ENSTSYG00000009792 I 0.000
SMAD4 Vicugna pacos ENSVPAG00000006757 I 0.000
ENSXMAG00000005051 Xiphophorus maculatus ENSXMAG00000005051 I 0.000
ENSXMAG00000015245 Xiphophorus maculatus ENSXMAG00000015245 I 0.000
Med Drosophila melanogaster FBgn0011655 D 0.000
GA14643 Drosophila pseudoobscura FBgn0074670 I 0.000
GF22974 Drosophila ananassae FBgn0099968 I 0.000
GG11819 Drosophila erecta FBgn0104114 I 0.000
GH18642 Drosophila grimshawi FBgn0126109 I 0.000
GI23400 Drosophila mojavensis FBgn0146126 I 0.000
GL23637 Drosophila persimilis FBgn0161227 I 0.000
GM16436 Drosophila sechellia FBgn0171351 I 0.000
GJ23092 Drosophila virilis FBgn0210194 I 0.000
GK11724 Drosophila willistoni FBgn0213735 I 0.000
GE10952 Drosophila yakuba FBgn0228782 I 0.000
GB50071 Apis mellifera GB50071 I 0.000
genemark-nMf.1.1.scaf08549-processed-gene-0.3 Meloidogyne floridensis genemark-nMf.1.1.scaf08549-processed-gene-0.3 N 0.000
Gfo_R011803 Geospiza fortis Gfo_R011803 I 0.000
Gfo_R016223 Geospiza fortis Gfo_R016223 I 0.000
GPUH_0001329001 Gongylonema pulchrum GPUH_0001329001 I 0.000
HCOI00676200 Haemonchus contortus HCOI00676200 I 0.000
HelroG88197 Helobdella robusta HelroG88197 I 0.000
HHAL000393-PA Halyomorpha halys HHAL000393-PA I 0.000
HHAL000394-PA Halyomorpha halys HHAL000394-PA I 0.000
HMEL002203 Heliconius melpomene HMEL002203 I 0.000
HPBE_0001599301 Heligmosomoides bakeri HPBE_0001599301 I 0.000
Hsal_09633--XP_392838.3_APIME Harpegnathos saltator Hsal_09633--XP_392838.3_APIME I 0.000
ISCW018468 Ixodes scapularis ISCW018468 I 0.000
KGM_12572 Danaus plexippus KGM_12572 I 0.000
L596_g15 Steinernema carpocapsae L596_g15 I 0.000
L798_13939 Zootermopsis nevadensis L798_13939 I 0.000
L889_g28104 Steinernema feltiae L889_g28104 I 0.000
L893_g344 Steinernema glaseri L893_g344 I 0.000
L898_g17086 Steinernema monticolum L898_g17086 I 0.000
LCUP007928 Lucilia cuprina LCUP007928 I 0.000
LDEC015949 Leptinotarsa decemlineata LDEC015949 I 0.000
LLOJ008806 Lutzomyia longipalpis LLOJ008806 I 0.000
LOAG_08923 Loa loa LOAG_08923 I 0.000
LotgiG131078 Lottia gigantea LotgiG131078 I 0.000
maker-nMf.1.1.scaf02670-augustus-gene-0.3 Meloidogyne floridensis maker-nMf.1.1.scaf02670-augustus-gene-0.3 I 0.000
MCINX014520 Melitaea cinxia MCINX014520 I 0.000
MDOA012885 Musca domestica MDOA012885 I 0.000
MhA1_Contig1148.frz3.fgene1 Meloidogyne hapla MhA1_Contig1148.frz3.fgene1 N 0.000
Minc05381 Meloidogyne incognita Minc05381 I 0.000
Minc06628 Meloidogyne incognita Minc06628 I 0.000
Minc15475 Meloidogyne incognita Minc15475 N 0.000
ML02191a Mnemiopsis leidyi ML02191a I 0.000
Myotis_brandtii_Smad4_10005924 Myotis brandtii Myotis_brandtii_Smad4_10005924 I 0.000
nAv.1.0.1.g00430 Acanthocheilonema viteae nAv.1.0.1.g00430 I 0.000
nDi.2.2.2.g01429 Dirofilaria immitis nDi.2.2.2.g01429 I 0.000
NECAME_01081 Necator americanus NECAME_01081 N 0.000
NEMVEDRAFT_v1g248037 Nematostella vectensis NEMVEDRAFT_v1g248037 I 0.000
nLs.2.1.2.g01457 Litomosoides sigmodontis nLs.2.1.2.g01457 I 0.000
nOo.2.0.1.g00181 Onchocerca ochengi nOo.2.0.1.g00181 I 0.000
NV12984 Nasonia vitripennis NV12984 I 0.000
Ocbimv22032358m.g Octopus bimaculoides Ocbimv22032358m.g I 0.000
OESDEN_03018 Oesophagostomum dentatum OESDEN_03018 I 0.000
Ogr14199 Ophisaurus gracilis Ogr14199 I 0.000
PHUM002670 Pediculus humanus PHUM002670 I 0.000
PPAI002168 Phlebotomus papatasi PPAI002168 I 0.000
Pvit_01119 Pogona vitticeps Pvit_01119 I 0.000
RPRC010188 Rhodnius prolixus RPRC010188 I 0.000
SINV15516 Solenopsis invicta SINV15516 I 0.000
SMAR013850 Strigamia maritima SMAR013850 I 0.000
SMU15015494 Schmidtea mediterranea SMU15015494 I 0.000
SPU_004287 Strongylocentrotus purpuratus SPU_004287 I 0.000
SVUK_0000938201 Strongylus vulgaris SVUK_0000938201 I 0.000
TC010848 Tribolium castaneum TC010848 I 0.000
TCLT_0000917301 Thelazia callipaeda TCLT_0000917301 I 0.000
TELCIR_19676 Teladorsagia circumcincta TELCIR_19676 I 0.000
TMUE_s0006012700 Trichuris muris TMUE_s0006012700 I 0.000
TriadG30731 Trichoplax adhaerens TriadG30731 I 0.000
TTRE_0000855901 Trichuris trichiura TTRE_0000855901 I 0.000
WBGene00241622 Onchocerca volvulus WBGene00241622 I 0.000
WUBG_02880 Wuchereria bancrofti WUBG_02880 I 0.000
smad4.1 Xenopus tropicalis XB-GENE-485691 I 0.000
smad4.1.L Xenopus laevis XB-GENE-865543 I 0.000
YQE_06624 Dendroctonus ponderosae YQE_06624 I 0.000
YQE_08737 Dendroctonus ponderosae YQE_08737 I 0.000