Cagra.0568s0171 (Capsella grandiflora)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Cagra.0568s0171 T007703_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB1F
M00962_2.00 		Arabidopsis thaliana
NRCCGACNN
NNGTCGGYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_thaliana 		0.857 0.980
DREB1F
M00840_2.00 		Arabidopsis thaliana
NRYCGACNN
NNGTCGRYN		 PBM
Franco-Zorrilla et al.(2014)
DDF1 		0.857 0.980
DDF1
M00964_2.00 		Arabidopsis lyrata
NRYCGACDY
RHGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF1_Arabidopsis_lyrata 		0.857 0.980
DREB1F
M06564_2.00 		Arabidopsis thaliana
NHNHYGYCGACATNN
NNATGTCGRCRDNDN		 Dap-seq
OMalley et al.(2016)
DDF1_col_a 		0.857 0.980
DREB1F
M06565_2.00 		Arabidopsis thaliana
HNDNNRYCGACAH
DTGTCGRYNNHND		 Dap-seq
OMalley et al.(2016)
DDF1_colamp_a 		0.857 0.980
DREB1F
M09701_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1F_03 		0.857 0.980
ddf2
M00965_2.00 		Arabidopsis lyrata
NRYCGACAT
ATGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_lyrata 		0.779 0.820
DREB1E
M00963_2.00 		Arabidopsis thaliana
NRYCGACAT
ATGTCGRYN		 PBM
LehtiShiu et al.(2015)
DDF2_Arabidopsis_thaliana 		0.728 0.820
DREB1E
M06589_2.00 		Arabidopsis thaliana
NNNYYGYCGACATVD
HBATGTCGRCRRNNN		 Dap-seq
OMalley et al.(2016)
DDF2_col_a 		0.728 0.820
DREB1E
M09702_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1E_03 		0.728 0.820
DREB1A
M01624_2.00 		Arabidopsis thaliana
NRCCGACNNN
NNNGTCGGYN		 PBM
Weirauch et al.(2014)
pTH8163 		0.696 0.740
DREB1A
M01625_2.00 		Arabidopsis thaliana
NNRCCGACNW
WNGTCGGYNN		 PBM
Weirauch et al.(2014)
pTH9718 		0.696 0.740
DREB1A
M06641_2.00 		Arabidopsis thaliana
HNYBRCCGACDWNN
NNWHGTCGGYVRND		 Dap-seq
OMalley et al.(2016)
CBF3_col_a 		0.696 0.740
DREB1A
M06642_2.00 		Arabidopsis thaliana
YBRCCGACATN
NATGTCGGYVR		 Dap-seq
OMalley et al.(2016)
CBF3_colamp_a 		0.696 0.740
DREB1D
M06678_2.00 		Arabidopsis thaliana
NHBRCCGACRTNN
NNAYGTCGGYVDN		 Dap-seq
OMalley et al.(2016)
CBF4_col_a 		0.693 0.740
DREB1D
M06679_2.00 		Arabidopsis thaliana
HYRCCGACATND
HNATGTCGGYRD		 Dap-seq
OMalley et al.(2016)
CBF4_colamp_a 		0.693 0.740
DREB1G
M01635_2.00 		Oryza sativa
NYGCCGACAN
NTGTCGGCRN		 PBM
Weirauch et al.(2014)
pTH8352 		0.679 0.700
DREB1G
M09707_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DREB1G_01 		0.679 0.700
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.0568s0171.1.p AP2 29 80

Links

Other AP2 family TFs
Other Capsella grandiflora TFs

139 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo3g019610 Brassica oleracea Bo3g019610 I
Bra006851 Brassica rapa Bra006851 I
GSMUA_Achr2G16730_001 Musa acuminata GSMUA_Achr2G16730_001 I
GSMUA_Achr7G09030_001 Musa acuminata GSMUA_Achr7G09030_001 I
PGSC0003DMG400002337 Solanum tuberosum PGSC0003DMG400002337 I
MDP0000309902 Malus domestica MDP0000309902 I
PK21934.1 Cannabis sativa PK21934.1 I
AMTR_s00064p00107710 Amborella trichopoda AMTR_s00064p00107710 N
GATA21 Arabidopsis thaliana AT5G56860 N
BGIOSGA006859 Oryza indica BGIOSGA006859 N
BGIOSGA023117 Oryza indica BGIOSGA023117 N
BGIOSGA023119 Oryza indica BGIOSGA023119 N
Bo1g042950 Brassica oleracea Bo1g042950 N
Bo2g033970 Brassica oleracea Bo2g033970 N
Bo7g110740 Brassica oleracea Bo7g110740 N
Bo9g127360 Brassica oleracea Bo9g127360 N
Bra002788 Brassica rapa Bra002788 N
Bra019118 Brassica rapa Bra019118 N
Bra026461 Brassica rapa Bra026461 N
Bra035633 Brassica rapa Bra035633 N
BRADI1G37480 Brachypodium distachyon BRADI1G37480 N
BRADI3G08240 Brachypodium distachyon BRADI3G08240 N
CGA1 Arabidopsis lyrata fgenesh2_kg.7__1630__AT4G26150.1 N
GNC Arabidopsis lyrata fgenesh2_kg.8__1592__AT5G56860.1 N
GLYMA04G05431 Glycine max GLYMA04G05431 N
GLYMA13G00200 Glycine max GLYMA13G00200 N
GLYMA14G10830 Glycine max GLYMA14G10830 N
GLYMA15G18380 Glycine max GLYMA15G18380 N
GLYMA17G06290 Glycine max GLYMA17G06290 N
GLYMA17G34670 Glycine max GLYMA17G34670 N
GRMZM2G031983 Zea mays GRMZM2G031983 N
GRMZM2G039586 Zea mays GRMZM2G039586 N
GSMUA_Achr10G27510_001 Musa acuminata GSMUA_Achr10G27510_001 N
GSMUA_Achr4G30820_001 Musa acuminata GSMUA_Achr4G30820_001 N
GSMUA_Achr8G24880_001 Musa acuminata GSMUA_Achr8G24880_001 N
LPERR02G07780 Leersia perrieri LPERR02G07780 N
LPERR06G15680 Leersia perrieri LPERR06G15680 N
MLOC_10364 Hordeum vulgare MLOC_10364 N
MLOC_70809 Hordeum vulgare MLOC_70809 N
MTR_1g016170 Medicago truncatula MTR_1g016170 N
MTR_2g038720 Medicago truncatula MTR_2g038720 N
MTR_4g126350 Medicago truncatula MTR_4g126350 N
OB02G18010 Oryza brachyantha OB02G18010 N
OB06G26630 Oryza brachyantha OB06G26630 N
OBART02G08990 Oryza barthii OBART02G08990 N
OBART06G19060 Oryza barthii OBART06G19060 N
OGLUM02G09200 Oryza glumaepatula OGLUM02G09200 N
OGLUM06G20240 Oryza glumaepatula OGLUM06G20240 N
OMERI02G10250 Oryza meridionalis OMERI02G10250 N
ONIVA06G22870 Oryza nivara ONIVA06G22870 N
ONIVA11G03260 Oryza nivara ONIVA11G03260 N
OPUNC02G08040 Oryza punctata OPUNC02G08040 N
OPUNC06G17260 Oryza punctata OPUNC06G17260 N
ORGLA06G0158200 Oryza glaberrima ORGLA06G0158200 N
ORUFI02G09020 Oryza rufipogon ORUFI02G09020 N
ORUFI06G20160 Oryza rufipogon ORUFI06G20160 N
OS02G0220400 Oryza sativa OS02G0220400 N
OS06G0571800 Oryza sativa OS06G0571800 N
PGSC0003DMG400000280 Solanum tuberosum PGSC0003DMG400000280 N
PGSC0003DMG400004493 Solanum tuberosum PGSC0003DMG400004493 N
POPTR_0006s24560 Populus trichocarpa POPTR_0006s24560 N
POPTR_0018s05160 Populus trichocarpa POPTR_0018s05160 N
PRUPE_ppa018120mg Prunus persica PRUPE_ppa018120mg N
PRUPE_ppa024374mg Prunus persica PRUPE_ppa024374mg N
Sb04g007750 Sorghum bicolor Sb04g007750 N
Sb10g022580 Sorghum bicolor Sb10g022580 N
Si006733m.g Setaria italica Si006733m.g N
Si019058m.g Setaria italica Si019058m.g N
Solyc07g038160.2 Solanum lycopersicum Solyc07g038160.2 N
Solyc12g008830.1 Solanum lycopersicum Solyc12g008830.1 N
TCM_037285 Theobroma cacao TCM_037285 N
TCM_037666 Theobroma cacao TCM_037666 N
Traes_6AS_1BF0823061 Triticum aestivum Traes_6AS_1BF0823061 N
Traes_6AS_1BF082306 Triticum aestivum Traes_6AS_1BF082306 N
Traes_6BS_4EA352A7A Triticum aestivum Traes_6BS_4EA352A7A N
Traes_6DS_77038429A Triticum aestivum Traes_6DS_77038429A N
Traes_7BL_86BB5C61E Triticum aestivum Traes_7BL_86BB5C61E N
Traes_7DL_BFADB408C Triticum aestivum Traes_7DL_BFADB408C N
VIT_04s0008g01290 Vitis vinifera VIT_04s0008g01290 N
VIT_11s0016g02210 Vitis vinifera VIT_11s0016g02210 N
Cla021191 Citrullus lanatus Cla021191 N
Pm005502 Prunus mume Pm005502 N
Pm027164 Prunus mume Pm027164 N
29794.m003323 Ricinus communis 29794.m003323 N
29912.m005322 Ricinus communis 29912.m005322 N
cassava32152.m1 Manihot esculenta cassava32152.m1 N
cassava33236.m1 Manihot esculenta cassava33236.m1 N
cassava43851.valid.m1 Manihot esculenta cassava43851.valid.m1 N
Cucsa.353330 Cucumis sativus Cucsa.353330 N
Cucsa.397360 Cucumis sativus Cucsa.397360 N
mgf008387m Mimulus guttatus mgf008387m N
mgf025842m Mimulus guttatus mgf025842m N
Aquca_020_00467 Aquilegia coerulea Aquca_020_00467 N
Bostr.26833s0575 Boechera stricta Bostr.26833s0575 N
Bostr.7867s0434 Boechera stricta Bostr.7867s0434 N
Cagra.3467s0056 Capsella grandiflora Cagra.3467s0056 N
Cagra.4138s0005 Capsella grandiflora Cagra.4138s0005 N
Carubv10005113m.g Capsella rubella Carubv10005113m.g N
Carubv10026556m.g Capsella rubella Carubv10026556m.g N
Ciclev10008943m.g Citrus clementina Ciclev10008943m.g N
Ciclev10008968m.g Citrus clementina Ciclev10008968m.g N
Ciclev10009004m.g Citrus clementina Ciclev10009004m.g N
Eucgr.C03048 Eucalyptus grandis Eucgr.C03048 N
Eucgr.C03895 Eucalyptus grandis Eucgr.C03895 N
evm.TU.supercontig_93.28 Carica papaya evm.TU.supercontig_93.28 N
gene02686-v1.0-hybrid Fragaria vesca gene02686-v1.0-hybrid N
gene12624-v1.0-hybrid Fragaria vesca gene12624-v1.0-hybrid N
Gorai.009G031400 Gossypium raimondii Gorai.009G031400 N
Gorai.009G045000 Gossypium raimondii Gorai.009G045000 N
Gorai.010G082800 Gossypium raimondii Gorai.010G082800 N
Gorai.010G101100 Gossypium raimondii Gorai.010G101100 N
Lus10029863.g Linum usitatissimum Lus10029863.g N
MDP0000131803 Malus domestica MDP0000131803 N
MDP0000190038 Malus domestica MDP0000190038 N
MDP0000237740 Malus domestica MDP0000237740 N
MDP0000739900 Malus domestica MDP0000739900 N
orange1.1g020987m.g Citrus sinensis orange1.1g020987m.g N
orange1.1g021329m.g Citrus sinensis orange1.1g021329m.g N
orange1.1g021859m.g Citrus sinensis orange1.1g021859m.g N
Pavir.Aa02907 Panicum virgatum Pavir.Aa02907 N
Pavir.Ab00790 Panicum virgatum Pavir.Ab00790 N
Pavir.Da00760 Panicum virgatum Pavir.Da00760 N
Pavir.Db01250 Panicum virgatum Pavir.Db01250 N
SapurV1A.0086s0290 Salix purpurea SapurV1A.0086s0290 N
Thhalv10013793m.g Eutrema salsugineum Thhalv10013793m.g N
Thhalv10025461m.g Eutrema salsugineum Thhalv10025461m.g N
PK07593.1 Cannabis sativa PK07593.1 N
chr4.CM0244.740.nd Lotus japonicus chr4.CM0244.740.nd N
chr5.CM0019.380.nc Lotus japonicus chr5.CM0019.380.nc N