Carubv10020777m.g (Capsella rubella)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Carubv10020777m.g T007899_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF013
M06601_2.00 		Arabidopsis thaliana
DYCACCGHCAHHDNHNNNNNN
NNNNNNDNHDDTGDCGGTGRH		 Dap-seq
OMalley et al.(2016)
At1g77640_col_a 		0.797 0.960
ERF014
M06581_2.00 		Arabidopsis thaliana
YCDYCDCCACCGHCD
HGDCGGTGGHGRHGR		 Dap-seq
OMalley et al.(2016)
AT1G44830_col_a 		0.752 0.920
ERF012
M06570_2.00 		Arabidopsis thaliana
NHNNHNHHDHHDCCACCGHC
GDCGGTGGHDDHDDNDNNDN		 Dap-seq
OMalley et al.(2016)
DREB26_col_a 		0.751 0.920
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10020777m AP2 44 95

Links

Other AP2 family TFs
Other Capsella rubella TFs

111 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ERF012 Arabidopsis thaliana AT1G21910 D 0.751
ERF014 Arabidopsis thaliana AT1G44830 D 0.752
ERF013 Arabidopsis thaliana AT1G77640 D 0.797
BGIOSGA005542 Oryza indica BGIOSGA005542 I 0.739
BGIOSGA022531 Oryza indica BGIOSGA022531 I 0.692
Bo5g034880 Brassica oleracea Bo5g034880 I 0.751
Bo6g004620 Brassica oleracea Bo6g004620 I 0.752
Bo6g121400 Brassica oleracea Bo6g121400 I 0.760
Bo7g059990 Brassica oleracea Bo7g059990 I 0.699
Bo8g071150 Brassica oleracea Bo8g071150 I 0.761
Bra012298 Brassica rapa Bra012298 I 0.742
Bra015660 Brassica rapa Bra015660 I 0.760
Bra016400 Brassica rapa Bra016400 I 0.761
Bra036022 Brassica rapa Bra036022 I 0.751
Bra040309 Brassica rapa Bra040309 I 0.752
BRADI1G46120 Brachypodium distachyon BRADI1G46120 I 0.730
BRADI3G57867 Brachypodium distachyon BRADI3G57867 I 0.741
F775_17148 Aegilops tauschii F775_17148 I 0.741
F775_20580 Aegilops tauschii F775_20580 I 0.730
DREB26 Arabidopsis lyrata fgenesh2_kg.1__2381__AT1G21910.1 I 0.751
fgenesh2_kg.1__3777__AT1G44830.1 Arabidopsis lyrata fgenesh2_kg.1__3777__AT1G44830.1 I 0.752
fgenesh2_kg.2__2058__AT1G77640.1 Arabidopsis lyrata fgenesh2_kg.2__2058__AT1G77640.1 I 0.797
GLYMA04G43040 Glycine max GLYMA04G43040 I 0.752
GLYMA06G11700 Glycine max GLYMA06G11700 I 0.752
GLYMA13G02860 Glycine max GLYMA13G02860 I 0.752
GLYMA14G22970 Glycine max GLYMA14G22970 I 0.752
GRMZM2G007406 Zea mays GRMZM2G007406 I 0.703
GRMZM2G011110 Zea mays GRMZM2G011110 I 0.739
GRMZM2G015281 Zea mays GRMZM2G015281 I 0.711
GRMZM2G021369 Zea mays GRMZM2G021369 I 0.699
GRMZM2G084264 Zea mays GRMZM2G084264 I 0.691
GSMUA_Achr10G25270_001 Musa acuminata GSMUA_Achr10G25270_001 I 0.730
GSMUA_Achr10G30100_001 Musa acuminata GSMUA_Achr10G30100_001 I 0.730
GSMUA_Achr8G23240_001 Musa acuminata GSMUA_Achr8G23240_001 I 0.739
LPERR02G27720 Leersia perrieri LPERR02G27720 I 0.733
LPERR06G06370 Leersia perrieri LPERR06G06370 I 0.739
MLOC_70931 Hordeum vulgare MLOC_70931 I 0.729
MTR_3g072610 Medicago truncatula MTR_3g072610 I 0.752
MTR_5g058470 Medicago truncatula MTR_5g058470 I 0.752
OBART06G07000 Oryza barthii OBART06G07000 I 0.692
OGLUM02G34320 Oryza glumaepatula OGLUM02G34320 I 0.739
OGLUM06G07380 Oryza glumaepatula OGLUM06G07380 I 0.692
OMERI02G32260 Oryza meridionalis OMERI02G32260 I 0.739
OMERI06G08130 Oryza meridionalis OMERI06G08130 I 0.692
ONIVA02G33600 Oryza nivara ONIVA02G33600 I 0.739
ONIVA06G08290 Oryza nivara ONIVA06G08290 I 0.692
OPUNC02G31280 Oryza punctata OPUNC02G31280 I 0.739
OPUNC06G06600 Oryza punctata OPUNC06G06600 I 0.692
ORGLA06G0065100 Oryza glaberrima ORGLA06G0065100 I 0.692
OS02G0767800 Oryza sativa OS02G0767800 I 0.739
PGSC0003DMG400000910 Solanum tuberosum PGSC0003DMG400000910 I 0.760
POPTR_0002s08610 Populus trichocarpa POPTR_0002s08610 I 0.752
POPTR_0005s15830 Populus trichocarpa POPTR_0005s15830 I 0.738
PRUPE_ppa010649mg Prunus persica PRUPE_ppa010649mg I 0.752
Sb01g040280 Sorghum bicolor Sb01g040280 I 0.711
Sb04g034290 Sorghum bicolor Sb04g034290 I 0.739
Sb10g006980 Sorghum bicolor Sb10g006980 I 0.724
Si007977m.g Setaria italica Si007977m.g I 0.730
Si039170m.g Setaria italica Si039170m.g I 0.711
Solyc11g012980.1 Solanum lycopersicum Solyc11g012980.1 I 0.760
TCM_035077 Theobroma cacao TCM_035077 I 0.752
VIT_18s0001g03240 Vitis vinifera VIT_18s0001g03240 I 0.752
Ca_25824 Cicer arietinum Ca_25824 I 0.752
Cla014165 Citrullus lanatus Cla014165 I 0.752
Cla023512 Citrullus lanatus Cla023512 I 0.752
Pm004870 Prunus mume Pm004870 I 0.752
29908.m006165 Ricinus communis 29908.m006165 I 0.752
cassava28944.valid.m1 Manihot esculenta cassava28944.valid.m1 I 0.752
cassava44357.m1 Manihot esculenta cassava44357.m1 I 0.741
Cucsa.365220 Cucumis sativus Cucsa.365220 I 0.752
Cucsa.372760 Cucumis sativus Cucsa.372760 I 0.752
mgf021045m Mimulus guttatus mgf021045m I 0.752
mgf023290m Mimulus guttatus mgf023290m I 0.736
Aquca_014_00181 Aquilegia coerulea Aquca_014_00181 I 0.752
Bostr.12302s0095 Boechera stricta Bostr.12302s0095 I 0.752
Bostr.12659s0041 Boechera stricta Bostr.12659s0041 I 0.751
Bostr.20129s0200 Boechera stricta Bostr.20129s0200 I 0.797
Cagra.0096s0069 Capsella grandiflora Cagra.0096s0069 I 0.808
Cagra.1192s0001 Capsella grandiflora Cagra.1192s0001 I 0.752
Cagra.2306s0038 Capsella grandiflora Cagra.2306s0038 I 0.751
Carubv10010179m.g Capsella rubella Carubv10010179m.g I 0.751
Carubv10010259m.g Capsella rubella Carubv10010259m.g I 0.752
Ciclev10002294m.g Citrus clementina Ciclev10002294m.g I 0.745
Eucgr.F03772 Eucalyptus grandis Eucgr.F03772 I 0.696
evm.TU.supercontig_36.41 Carica papaya evm.TU.supercontig_36.41 I 0.752
gene11145-v1.0-hybrid Fragaria vesca gene11145-v1.0-hybrid I 0.752
Gorai.002G220900 Gossypium raimondii Gorai.002G220900 I 0.752
Gorai.009G244500 Gossypium raimondii Gorai.009G244500 I 0.752
Gorai.010G048900 Gossypium raimondii Gorai.010G048900 I 0.752
Lus10003740.g Linum usitatissimum Lus10003740.g I 0.752
Lus10028032.g Linum usitatissimum Lus10028032.g I 0.752
MDP0000120147 Malus domestica MDP0000120147 I 0.752
MDP0000319736 Malus domestica MDP0000319736 I 0.789
MDP0000923690 Malus domestica MDP0000923690 I 0.752
orange1.1g039680m.g Citrus sinensis orange1.1g039680m.g I 0.745
Pavir.Ia03856 Panicum virgatum Pavir.Ia03856 I 0.711
Pavir.Ib01111 Panicum virgatum Pavir.Ib01111 I 0.711
Pavir.J02555 Panicum virgatum Pavir.J02555 I 0.739
Pavir.J23882 Panicum virgatum Pavir.J23882 I 0.730
Pavir.J26231 Panicum virgatum Pavir.J26231 I 0.730
Pavir.J30447 Panicum virgatum Pavir.J30447 I 0.679
SapurV1A.0010s0960 Salix purpurea SapurV1A.0010s0960 I 0.752
SapurV1A.0105s0160 Salix purpurea SapurV1A.0105s0160 I 0.738
SapurV1A.3198s0010 Salix purpurea SapurV1A.3198s0010 I 0.738
Thhalv10008639m.g Eutrema salsugineum Thhalv10008639m.g I 0.751
Thhalv10011778m.g Eutrema salsugineum Thhalv10011778m.g I 0.752
Thhalv10019045m.g Eutrema salsugineum Thhalv10019045m.g I 0.760
PK16069.1 Cannabis sativa PK16069.1 I 0.716
chr1.LjB21G05.120.nc Lotus japonicus chr1.LjB21G05.120.nc I 0.714
LjSGA_147935.1 Lotus japonicus LjSGA_147935.1 I 0.682
LjT35E05.90.nd Lotus japonicus LjT35E05.90.nd I 0.714