Pavir.J26231 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.J26231 T009613_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF014
M06581_2.00 		Arabidopsis thaliana
YCDYCDCCACCGHCD
HGDCGGTGGHGRHGR		 Dap-seq
OMalley et al.(2016)
AT1G44830_col_a 		0.773 0.900
ERF012
M06570_2.00 		Arabidopsis thaliana
NHNNHNHHDHHDCCACCGHC
GDCGGTGGHDDHDDNDNNDN		 Dap-seq
OMalley et al.(2016)
DREB26_col_a 		0.760 0.860
ERF013
M06601_2.00 		Arabidopsis thaliana
DYCACCGHCAHHDNHNNNNNN
NNNNNNDNHDDTGDCGGTGRH		 Dap-seq
OMalley et al.(2016)
At1g77640_col_a 		0.741 0.860
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J26231.1.p AP2 13 64

Links

Other AP2 family TFs
Other Panicum virgatum TFs

127 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ERF012 Arabidopsis thaliana AT1G21910 D 0.760
ERF014 Arabidopsis thaliana AT1G44830 D 0.773
ERF013 Arabidopsis thaliana AT1G77640 D 0.741
BGIOSGA005542 Oryza indica BGIOSGA005542 I 0.775
BGIOSGA011061 Oryza indica BGIOSGA011061 I 0.702
BGIOSGA022531 Oryza indica BGIOSGA022531 I 0.725
Bo5g034880 Brassica oleracea Bo5g034880 I 0.759
Bo6g004620 Brassica oleracea Bo6g004620 I 0.773
Bo6g121400 Brassica oleracea Bo6g121400 I 0.768
Bo7g059990 Brassica oleracea Bo7g059990 I 0.707
Bo8g071150 Brassica oleracea Bo8g071150 I 0.750
Bra012298 Brassica rapa Bra012298 I 0.741
Bra015660 Brassica rapa Bra015660 I 0.768
Bra016400 Brassica rapa Bra016400 I 0.750
Bra036022 Brassica rapa Bra036022 I 0.760
Bra040309 Brassica rapa Bra040309 I 0.773
BRADI1G46120 Brachypodium distachyon BRADI1G46120 I 0.795
BRADI1G67350 Brachypodium distachyon BRADI1G67350 I 0.702
BRADI3G57867 Brachypodium distachyon BRADI3G57867 I 0.773
F775_17148 Aegilops tauschii F775_17148 I 0.773
F775_20580 Aegilops tauschii F775_20580 I 0.793
DREB26 Arabidopsis lyrata fgenesh2_kg.1__2381__AT1G21910.1 I 0.760
fgenesh2_kg.1__3777__AT1G44830.1 Arabidopsis lyrata fgenesh2_kg.1__3777__AT1G44830.1 I 0.773
fgenesh2_kg.2__2058__AT1G77640.1 Arabidopsis lyrata fgenesh2_kg.2__2058__AT1G77640.1 I 0.741
GLYMA04G43040 Glycine max GLYMA04G43040 I 0.773
GLYMA06G11700 Glycine max GLYMA06G11700 I 0.773
GLYMA13G02860 Glycine max GLYMA13G02860 I 0.773
GLYMA14G22970 Glycine max GLYMA14G22970 I 0.773
GRMZM2G007406 Zea mays GRMZM2G007406 I 0.745
GRMZM2G011110 Zea mays GRMZM2G011110 I 0.775
GRMZM2G015281 Zea mays GRMZM2G015281 I 0.753
GRMZM2G021369 Zea mays GRMZM2G021369 I 0.724
GRMZM2G084264 Zea mays GRMZM2G084264 I 0.758
GSMUA_Achr10G19460_001 Musa acuminata GSMUA_Achr10G19460_001 I 0.681
GSMUA_Achr10G25270_001 Musa acuminata GSMUA_Achr10G25270_001 I 0.768
GSMUA_Achr10G30100_001 Musa acuminata GSMUA_Achr10G30100_001 I 0.764
GSMUA_Achr8G23240_001 Musa acuminata GSMUA_Achr8G23240_001 I 0.770
LPERR02G27720 Leersia perrieri LPERR02G27720 I 0.768
LPERR03G10190 Leersia perrieri LPERR03G10190 I 0.702
LPERR06G06370 Leersia perrieri LPERR06G06370 I 0.775
MLOC_70931 Hordeum vulgare MLOC_70931 I 0.792
MTR_3g072610 Medicago truncatula MTR_3g072610 I 0.773
MTR_5g058470 Medicago truncatula MTR_5g058470 I 0.773
OB03G21640 Oryza brachyantha OB03G21640 I 0.690
OBART03G11470 Oryza barthii OBART03G11470 I 0.702
OBART06G07000 Oryza barthii OBART06G07000 I 0.725
OGLUM02G34320 Oryza glumaepatula OGLUM02G34320 I 0.775
OGLUM03G11430 Oryza glumaepatula OGLUM03G11430 I 0.702
OGLUM06G07380 Oryza glumaepatula OGLUM06G07380 I 0.725
OMERI02G32260 Oryza meridionalis OMERI02G32260 I 0.775
OMERI03G10750 Oryza meridionalis OMERI03G10750 I 0.702
OMERI06G08130 Oryza meridionalis OMERI06G08130 I 0.725
ONIVA02G33600 Oryza nivara ONIVA02G33600 I 0.775
ONIVA03G12660 Oryza nivara ONIVA03G12660 I 0.702
ONIVA06G08290 Oryza nivara ONIVA06G08290 I 0.725
OPUNC02G31280 Oryza punctata OPUNC02G31280 I 0.775
OPUNC03G11030 Oryza punctata OPUNC03G11030 I 0.702
OPUNC06G06600 Oryza punctata OPUNC06G06600 I 0.725
ORGLA03G0110800 Oryza glaberrima ORGLA03G0110800 I 0.702
ORGLA06G0065100 Oryza glaberrima ORGLA06G0065100 I 0.725
ORUFI03G11820 Oryza rufipogon ORUFI03G11820 I 0.702
OS02G0767800 Oryza sativa OS02G0767800 I 0.775
OS03G0263000 Oryza sativa OS03G0263000 I 0.702
PGSC0003DMG400000910 Solanum tuberosum PGSC0003DMG400000910 I 0.767
POPTR_0002s08610 Populus trichocarpa POPTR_0002s08610 I 0.773
POPTR_0005s15830 Populus trichocarpa POPTR_0005s15830 I 0.761
PRUPE_ppa010649mg Prunus persica PRUPE_ppa010649mg I 0.773
Sb01g040280 Sorghum bicolor Sb01g040280 I 0.753
Sb04g034290 Sorghum bicolor Sb04g034290 I 0.775
Sb10g006980 Sorghum bicolor Sb10g006980 I 0.790
Si007977m.g Setaria italica Si007977m.g I 0.796
Si039170m.g Setaria italica Si039170m.g I 0.753
Solyc11g012980.1 Solanum lycopersicum Solyc11g012980.1 I 0.767
TCM_035077 Theobroma cacao TCM_035077 I 0.773
Traes_4AS_18663793B Triticum aestivum Traes_4AS_18663793B I 0.702
Traes_4BL_762F09E09 Triticum aestivum Traes_4BL_762F09E09 I 0.702
Traes_4DL_FB8B5AAEB Triticum aestivum Traes_4DL_FB8B5AAEB I 0.702
VIT_18s0001g03240 Vitis vinifera VIT_18s0001g03240 I 0.770
Ca_25824 Cicer arietinum Ca_25824 I 0.773
Cla014165 Citrullus lanatus Cla014165 I 0.773
Cla023512 Citrullus lanatus Cla023512 I 0.770
Pm004870 Prunus mume Pm004870 I 0.773
29908.m006165 Ricinus communis 29908.m006165 I 0.773
cassava28944.valid.m1 Manihot esculenta cassava28944.valid.m1 I 0.773
cassava44357.m1 Manihot esculenta cassava44357.m1 I 0.763
Cucsa.365220 Cucumis sativus Cucsa.365220 I 0.773
Cucsa.372760 Cucumis sativus Cucsa.372760 I 0.770
mgf021045m Mimulus guttatus mgf021045m I 0.773
mgf023290m Mimulus guttatus mgf023290m I 0.763
Aquca_014_00181 Aquilegia coerulea Aquca_014_00181 I 0.775
Bostr.12302s0095 Boechera stricta Bostr.12302s0095 I 0.773
Bostr.12659s0041 Boechera stricta Bostr.12659s0041 I 0.760
Bostr.20129s0200 Boechera stricta Bostr.20129s0200 I 0.741
Cagra.0096s0069 Capsella grandiflora Cagra.0096s0069 I 0.730
Cagra.1192s0001 Capsella grandiflora Cagra.1192s0001 I 0.773
Cagra.2306s0038 Capsella grandiflora Cagra.2306s0038 I 0.760
Carubv10010179m.g Capsella rubella Carubv10010179m.g I 0.760
Carubv10010259m.g Capsella rubella Carubv10010259m.g I 0.773
Carubv10020777m.g Capsella rubella Carubv10020777m.g I 0.730
Ciclev10002294m.g Citrus clementina Ciclev10002294m.g I 0.767
Eucgr.F03772 Eucalyptus grandis Eucgr.F03772 I 0.719
evm.TU.supercontig_36.41 Carica papaya evm.TU.supercontig_36.41 I 0.773
gene11145-v1.0-hybrid Fragaria vesca gene11145-v1.0-hybrid I 0.773
Gorai.002G220900 Gossypium raimondii Gorai.002G220900 I 0.773
Gorai.009G244500 Gossypium raimondii Gorai.009G244500 I 0.773
Gorai.010G048900 Gossypium raimondii Gorai.010G048900 I 0.773
Lus10003740.g Linum usitatissimum Lus10003740.g I 0.773
Lus10028032.g Linum usitatissimum Lus10028032.g I 0.773
MDP0000120147 Malus domestica MDP0000120147 I 0.773
MDP0000319736 Malus domestica MDP0000319736 I 0.746
MDP0000923690 Malus domestica MDP0000923690 I 0.773
orange1.1g039680m.g Citrus sinensis orange1.1g039680m.g I 0.767
Pavir.Ia03856 Panicum virgatum Pavir.Ia03856 I 0.753
Pavir.Ib01111 Panicum virgatum Pavir.Ib01111 I 0.753
Pavir.J02555 Panicum virgatum Pavir.J02555 I 0.775
Pavir.J23882 Panicum virgatum Pavir.J23882 I 0.796
Pavir.J30447 Panicum virgatum Pavir.J30447 I 0.715
SapurV1A.0010s0960 Salix purpurea SapurV1A.0010s0960 I 0.773
SapurV1A.0105s0160 Salix purpurea SapurV1A.0105s0160 I 0.760
SapurV1A.3198s0010 Salix purpurea SapurV1A.3198s0010 I 0.760
Thhalv10008639m.g Eutrema salsugineum Thhalv10008639m.g I 0.760
Thhalv10011778m.g Eutrema salsugineum Thhalv10011778m.g I 0.773
Thhalv10019045m.g Eutrema salsugineum Thhalv10019045m.g I 0.768
PK16069.1 Cannabis sativa PK16069.1 I 0.738
chr1.LjB21G05.120.nc Lotus japonicus chr1.LjB21G05.120.nc I 0.736
LjSGA_147935.1 Lotus japonicus LjSGA_147935.1 I 0.699
LjT35E05.90.nd Lotus japonicus LjT35E05.90.nd I 0.736