Lus10040403.g (Linum usitatissimum)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 Lus10040403.g T023575_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARF16
M06708_2.00 		Arabidopsis thaliana
TTTACGKTTTTGGCGGRAAAA
TTTTYCCGCCAAAAMCGTAAA		 Dap-seq
OMalley et al.(2016)
ARF16_col_b 		0.876 0.876
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10040403 B3 107 209

Links

Other B3 family TFs
Other Linum usitatissimum TFs

215 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MYB3R5 Arabidopsis thaliana AT5G02320 D 0.000
29846.m000184 Ricinus communis 29846.m000184 I 0.000
Carubv10000643m.g Capsella rubella Carubv10000643m.g I 0.000
Cagra.2515s0028 Capsella grandiflora Cagra.2515s0028 I 0.000
Cagra.0487s0012 Capsella grandiflora Cagra.0487s0012 I 0.000
Bostr.6251s0040 Boechera stricta Bostr.6251s0040 I 0.000
Bostr.22252s0130 Boechera stricta Bostr.22252s0130 I 0.000
Aquca_003_00045 Aquilegia coerulea Aquca_003_00045 I 0.000
mgf019610m Mimulus guttatus mgf019610m I 0.000
Cucsa.175460 Cucumis sativus Cucsa.175460 I 0.000
cassava12645.valid.m1 Manihot esculenta cassava12645.valid.m1 I 0.000
Ciclev10011452m.g Citrus clementina Ciclev10011452m.g I 0.000
Pm002704 Prunus mume Pm002704 I 0.000
Cla018173 Citrullus lanatus Cla018173 I 0.000
VIT_08s0007g00360 Vitis vinifera VIT_08s0007g00360 I 0.000
TRIUR3_29290 Triticum urartu TRIUR3_29290 I 0.000
Traes_3DL_6BBC889A1 Triticum aestivum Traes_3DL_6BBC889A1 I 0.000
TRAES3BF104600030CFD_g Triticum aestivum TRAES3BF104600030CFD_g I 0.000
Traes_3AL_386795528 Triticum aestivum Traes_3AL_386795528 I 0.000
MDP0000219581 Malus domestica MDP0000219581 I 0.000
chr1.CM0147.520.nd Lotus japonicus chr1.CM0147.520.nd I 0.000
PK11664.1 Cannabis sativa PK11664.1 I 0.000
Thhalv10020579m.g Eutrema salsugineum Thhalv10020579m.g I 0.000
Thhalv10013211m.g Eutrema salsugineum Thhalv10013211m.g I 0.000
SapurV1A.0001s1810 Salix purpurea SapurV1A.0001s1810 I 0.000
Pavir.Eb03676 Panicum virgatum Pavir.Eb03676 I 0.000
Pavir.Ea03349 Panicum virgatum Pavir.Ea03349 I 0.000
orange1.1g009402m.g Citrus sinensis orange1.1g009402m.g I 0.000
Carubv10013377m.g Capsella rubella Carubv10013377m.g I 0.000
Lus10025351.g Linum usitatissimum Lus10025351.g I 0.000
Lus10024394.g Linum usitatissimum Lus10024394.g I 0.000
Gorai.006G172800 Gossypium raimondii Gorai.006G172800 I 0.000
Gorai.001G249400 Gossypium raimondii Gorai.001G249400 I 0.000
gene18416-v1.0-hybrid Fragaria vesca gene18416-v1.0-hybrid I 0.000
evm.TU.supercontig_228.17 Carica papaya evm.TU.supercontig_228.17 I 0.000
Eucgr.K03133 Eucalyptus grandis Eucgr.K03133 I 0.000
MYB3R-3 Arabidopsis thaliana AT3G09370 I 0.000
fgenesh1_pg.C_scaffold_3000839 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000839 I 0.000
LPERR01G31650 Leersia perrieri LPERR01G31650 I 0.000
GSMUA_Achr7G10520_001 Musa acuminata GSMUA_Achr7G10520_001 I 0.000
GSMUA_Achr6G05030_001 Musa acuminata GSMUA_Achr6G05030_001 I 0.000
GSMUA_Achr10G26610_001 Musa acuminata GSMUA_Achr10G26610_001 I 0.000
GRMZM2G081919 Zea mays GRMZM2G081919 I 0.000
GLYMA18G39740 Glycine max GLYMA18G39740 I 0.000
GLYMA07G15820 Glycine max GLYMA07G15820 I 0.000
ATMYB3R5 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000124 I 0.000
Traes_1BL_C25B5DDB4 Triticum aestivum Traes_1BL_C25B5DDB4 I 0.000
BRADI2G54640 Brachypodium distachyon BRADI2G54640 I 0.000
Bra034067 Brassica rapa Bra034067 I 0.000
Bra009597 Brassica rapa Bra009597 I 0.000
Bo9g184660 Brassica oleracea Bo9g184660 I 0.000
Bo5g139340 Brassica oleracea Bo5g139340 I 0.000
Bo1g144510 Brassica oleracea Bo1g144510 I 0.000
AMTR_s00012p00208260 Amborella trichopoda AMTR_s00012p00208260 I 0.000
PGSC0003DMG400008908 Solanum tuberosum PGSC0003DMG400008908 I 0.000
Solyc09g010820.2 Solanum lycopersicum Solyc09g010820.2 I 0.000
Si000842m.g Setaria italica Si000842m.g I 0.000
TCM_021936 Theobroma cacao TCM_021936 I 0.000
Sb03g039470 Sorghum bicolor Sb03g039470 I 0.000
PRUPE_ppa003208mg Prunus persica PRUPE_ppa003208mg I 0.000
Traes_1DL_B26A733D4 Triticum aestivum Traes_1DL_B26A733D4 I 0.000
POPTR_0006s08570 Populus trichocarpa POPTR_0006s08570 I 0.000
MYB3R-2 Oryza sativa OS01G0841500 I 0.000
ORGLA01G0306500 Oryza glaberrima ORGLA01G0306500 I 0.000
OPUNC05G16800 Oryza punctata OPUNC05G16800 I 0.000
OGLUM01G40780 Oryza glumaepatula OGLUM01G40780 I 0.000
MTR_7g061330 Medicago truncatula MTR_7g061330 I 0.000
OB01G45570 Oryza brachyantha OB01G45570 I 0.000
MTR_7g461410 Medicago truncatula MTR_7g461410 I 0.000
PDK_20s1314361g001 Phoenix dactylifera PDK_20s1314361g001 N 0.000
Bo3g062020 Brassica oleracea Bo3g062020 N 0.000
Bra001311 Brassica rapa Bra001311 N 0.000
TRIUR3_33469 Triticum urartu TRIUR3_33469 N 0.000
F775_12121 Aegilops tauschii F775_12121 N 0.000
OB05G26770 Oryza brachyantha OB05G26770 N 0.000