30138.m003899 (Ricinus communis)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 30138.m003899 T047904_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
fgenesh1_pg.scaffold_37000071
M01757_2.00 		Physcomitrella patens
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8584 		0.892 0.843
BIM2
M01701_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8089 		0.884 0.922
BIM2
M06727_2.00 		Arabidopsis thaliana
CACGTGHBNNNNNNNNNNN
NNNNNNNNNNNVDCACGTG		 Dap-seq
OMalley et al.(2016)
BIM2_colamp 		0.884 0.922
BIM2
M06728_2.00 		Arabidopsis thaliana
CACGTGMBNNNCVYV
BRBGNNNVKCACGTG		 Dap-seq
OMalley et al.(2016)
BIM2_col_v3b 		0.884 0.922
BIM1
M01710_2.00 		Arabidopsis thaliana
NCRCGTGNNN
NNNCACGYGN		 PBM
Weirauch et al.(2014)
pTH8114 		0.864 0.824
BIM1
M06739_2.00 		Arabidopsis thaliana
CACGTGAYNHNNNH
DNNNDNRTCACGTG		 Dap-seq
OMalley et al.(2016)
BIM1_col_a 		0.864 0.824
BIM1
M06740_2.00 		Arabidopsis thaliana
NVKCACGTGMYHHNHNHNHNNN
NNNDNDNDNDDRKCACGTGMBN		 Dap-seq
OMalley et al.(2016)
BIM1_colamp_a 		0.864 0.824
BIM1
M09787_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BIM1_01 		0.864 0.824
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
30138.m003899 bHLH 52 102

Links

Other bHLH family TFs
Other Ricinus communis TFs

193 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BIM2 Arabidopsis thaliana AT1G69010 D 0.884
BIM1 Arabidopsis thaliana AT5G08130 D 0.864
fgenesh1_pg.scaffold_37000071 Physcomitrella patens fgenesh1_pg.scaffold_37000071 D 0.892
AMTR_s00006p00250310 Amborella trichopoda AMTR_s00006p00250310 I 0.892
ALC Arabidopsis thaliana AT5G67110 I 0.856
BGIOSGA005697 Oryza indica BGIOSGA005697 I 0.856
BGIOSGA022375 Oryza indica BGIOSGA022375 I 0.856
BGIOSGA028888 Oryza indica BGIOSGA028888 I 0.892
BGIOSGA030958 Oryza indica BGIOSGA030958 I 0.865
Bo2g062560 Brassica oleracea Bo2g062560 I 0.884
Bo2g161110 Brassica oleracea Bo2g161110 I 0.864
Bo3g004690 Brassica oleracea Bo3g004690 I 0.864
Bo5g020460 Brassica oleracea Bo5g020460 I 0.864
Bo6g108530 Brassica oleracea Bo6g108530 I 0.884
Bo9g174770 Brassica oleracea Bo9g174770 I 0.864
Bra004355 Brassica rapa Bra004355 I 0.884
Bra005969 Brassica rapa Bra005969 I 0.861
Bra009322 Brassica rapa Bra009322 I 0.864
Bra012133 Brassica rapa Bra012133 I 0.856
Bra029354 Brassica rapa Bra029354 I 0.864
Bra038332 Brassica rapa Bra038332 I 0.884
BRADI3G38970 Brachypodium distachyon BRADI3G38970 I 0.892
BRADI4G32967 Brachypodium distachyon BRADI4G32967 I 0.865
F775_23096 Aegilops tauschii F775_23096 I 0.865
BIM2 Arabidopsis lyrata fgenesh2_kg.2__1159__AT1G69010.1 I 0.884
ALC Arabidopsis lyrata fgenesh2_kg.8__2705__AT5G67110.1 I 0.856
GLYMA01G09010 Glycine max GLYMA01G09010 I 0.903
GLYMA02G13670 Glycine max GLYMA02G13670 I 0.914
GLYMA05G07490 Glycine max GLYMA05G07490 I 0.894
GLYMA08G28010 Glycine max GLYMA08G28010 I 0.884
GLYMA17G08980 Glycine max GLYMA17G08980 I 0.883
GLYMA18G51080 Glycine max GLYMA18G51080 I 0.884
GRMZM2G009478 Zea mays GRMZM2G009478 I 0.865
GRMZM2G017349 Zea mays GRMZM2G017349 I 0.856
GRMZM2G089501 Zea mays GRMZM2G089501 I 0.865
GRMZM2G172795 Zea mays GRMZM2G172795 I 0.841
GRMZM2G317450 Zea mays GRMZM2G317450 I 0.856
GSMUA_Achr2G05450_001 Musa acuminata GSMUA_Achr2G05450_001 I 0.870
GSMUA_Achr3G10640_001 Musa acuminata GSMUA_Achr3G10640_001 I 0.858
GSMUA_Achr4G19530_001 Musa acuminata GSMUA_Achr4G19530_001 I 0.870
GSMUA_Achr9G19110_001 Musa acuminata GSMUA_Achr9G19110_001 I 0.870
GSMUA_Achr9G28050_001 Musa acuminata GSMUA_Achr9G28050_001 I 0.881
LPERR04G17400 Leersia perrieri LPERR04G17400 I 0.841
LPERR06G03910 Leersia perrieri LPERR06G03910 I 0.856
LPERR08G15680 Leersia perrieri LPERR08G15680 I 0.868
LPERR09G10080 Leersia perrieri LPERR09G10080 I 0.865
MTR_1g019240 Medicago truncatula MTR_1g019240 I 0.856
MTR_4g110040 Medicago truncatula MTR_4g110040 I 0.894
MTR_5g048350 Medicago truncatula MTR_5g048350 I 0.884
MTR_7g017320 Medicago truncatula MTR_7g017320 I 0.884
OB02G38020 Oryza brachyantha OB02G38020 I 0.856
OB08G25940 Oryza brachyantha OB08G25940 I 0.892
OBART06G04330 Oryza barthii OBART06G04330 I 0.856
OBART09G13850 Oryza barthii OBART09G13850 I 0.865
OGLUM06G04430 Oryza glumaepatula OGLUM06G04430 I 0.856
OGLUM08G19830 Oryza glumaepatula OGLUM08G19830 I 0.892
OGLUM09G14430 Oryza glumaepatula OGLUM09G14430 I 0.865
OLONG_003583 Oryza longistaminata OLONG_003583 I 0.892
OLONG_020060 Oryza longistaminata OLONG_020060 I 0.865
OMERI06G05430 Oryza meridionalis OMERI06G05430 I 0.856
OMERI09G10560 Oryza meridionalis OMERI09G10560 I 0.865
ONIVA06G05510 Oryza nivara ONIVA06G05510 I 0.856
ONIVA08G20800 Oryza nivara ONIVA08G20800 I 0.892
ONIVA09G14370 Oryza nivara ONIVA09G14370 I 0.865
OPUNC08G16820 Oryza punctata OPUNC08G16820 I 0.892
OPUNC09G12310 Oryza punctata OPUNC09G12310 I 0.865
ORGLA02G0264700 Oryza glaberrima ORGLA02G0264700 I 0.856
ORGLA06G0039900 Oryza glaberrima ORGLA06G0039900 I 0.856
ORGLA06G0286200 Oryza glaberrima ORGLA06G0286200 I 0.865
ORGLA08G0164200 Oryza glaberrima ORGLA08G0164200 I 0.892
ORGLA09G0105800 Oryza glaberrima ORGLA09G0105800 I 0.865
ORUFI06G04330 Oryza rufipogon ORUFI06G04330 I 0.856
ORUFI08G21030 Oryza rufipogon ORUFI08G21030 I 0.892
ORUFI09G14830 Oryza rufipogon ORUFI09G14830 I 0.865
OS02G0726700 Oryza sativa OS02G0726700 I 0.856
OS08G0490000 Oryza sativa OS08G0490000 I 0.892
OS09G0475400 Oryza sativa OS09G0475400 I 0.865
PGSC0003DMG400001919 Solanum tuberosum PGSC0003DMG400001919 I 0.914
PGSC0003DMG400019654 Solanum tuberosum PGSC0003DMG400019654 I 0.914
PGSC0003DMG401007955 Solanum tuberosum PGSC0003DMG401007955 I 0.856
POPTR_0004s11180 Populus trichocarpa POPTR_0004s11180 I 0.884
POPTR_0008s11120 Populus trichocarpa POPTR_0008s11120 I 0.914
POPTR_0010s14740 Populus trichocarpa POPTR_0010s14740 I 0.914
POPTR_0012s06650 Populus trichocarpa POPTR_0012s06650 I 0.851
POPTR_0015s03550 Populus trichocarpa POPTR_0015s03550 I 0.894
POPTR_0017s13610 Populus trichocarpa POPTR_0017s13610 I 0.882
PRUPE_ppa003436mg Prunus persica PRUPE_ppa003436mg I 0.894
PRUPE_ppa008387mg Prunus persica PRUPE_ppa008387mg I 0.914
PRUPE_ppa008856mg Prunus persica PRUPE_ppa008856mg I 0.884
Sb02g027460 Sorghum bicolor Sb02g027460 I 0.865
Sb04g029270 Sorghum bicolor Sb04g029270 I 0.856
Sb06g025040 Sorghum bicolor Sb06g025040 I 0.841
Sb06g025060 Sorghum bicolor Sb06g025060 I 0.841
Sb07g028860 Sorghum bicolor Sb07g028860 I 0.861
Sb10g004500 Sorghum bicolor Sb10g004500 I 0.856
BIM1 Arabidopsis lyrata scaffold_600819.1 I 0.864
SELMODRAFT_451475 Selaginella moellendorffii SELMODRAFT_451475 I 0.892
SELMODRAFT_451477 Selaginella moellendorffii SELMODRAFT_451477 I 0.892
Si000845m.g Setaria italica Si000845m.g I 0.841
Si012401m.g Setaria italica Si012401m.g I 0.841
Si013622m.g Setaria italica Si013622m.g I 0.861
Si016505m.g Setaria italica Si016505m.g I 0.856
Si029604m.g Setaria italica Si029604m.g I 0.865
Solyc03g114720.2 Solanum lycopersicum Solyc03g114720.2 I 0.864
Solyc04g005280.2 Solanum lycopersicum Solyc04g005280.2 I 0.914
Solyc05g011810.2 Solanum lycopersicum Solyc05g011810.2 I 0.914
Solyc06g069370.2 Solanum lycopersicum Solyc06g069370.2 I 0.894
TCM_011433 Theobroma cacao TCM_011433 I 0.884
TCM_014392 Theobroma cacao TCM_014392 I 0.894
TCM_019015 Theobroma cacao TCM_019015 I 0.884
Traes_5AL_0D4BDDDCD Triticum aestivum Traes_5AL_0D4BDDDCD I 0.865
Traes_5BL_AAC9C7238 Triticum aestivum Traes_5BL_AAC9C7238 I 0.865
Traes_5DL_E96693018 Triticum aestivum Traes_5DL_E96693018 I 0.865
BIM2 Vitis vinifera VIT_01s0010g00540 I 0.914
BIM3 Vitis vinifera VIT_14s0083g00930 I 0.884
BIM1 Vitis vinifera VIT_17s0000g04790 I 0.894
Ca_19269 Cicer arietinum Ca_19269 I 0.856
Ca_22043 Cicer arietinum Ca_22043 I 0.884
Cla018818 Citrullus lanatus Cla018818 I 0.852
Cla022382 Citrullus lanatus Cla022382 I 0.914
29790.m000843 Ricinus communis 29790.m000843 I 0.884
30138.m003913 Ricinus communis 30138.m003913 I 0.870
cassava14.valid.m1 Manihot esculenta cassava14.valid.m1 I 0.884
cassava15.valid.m1 Manihot esculenta cassava15.valid.m1 I 0.884
cassava29314.valid.m1 Manihot esculenta cassava29314.valid.m1 I 0.914
cassava29318.valid.m1 Manihot esculenta cassava29318.valid.m1 I 0.894
cassava43370.valid.m1 Manihot esculenta cassava43370.valid.m1 I 0.914
cassava43379.valid.m1 Manihot esculenta cassava43379.valid.m1 I 0.894
Cucsa.113490 Cucumis sativus Cucsa.113490 I 0.864
Cucsa.174600 Cucumis sativus Cucsa.174600 I 0.884
Cucsa.198520 Cucumis sativus Cucsa.198520 I 0.883
Cucsa.328060 Cucumis sativus Cucsa.328060 I 0.914
estExt_fgenesh1_pg.C_2110039 Physcomitrella patens estExt_fgenesh1_pg.C_2110039 I 0.892
gw1.90.123.1 Physcomitrella patens gw1.90.123.1 I 0.892
mgf001137m Mimulus guttatus mgf001137m I 0.864
mgf005849m Mimulus guttatus mgf005849m I 0.864
mgf011829m Mimulus guttatus mgf011829m I 0.884
mgf013208m Mimulus guttatus mgf013208m I 0.914
Aquca_002_00952 Aquilegia coerulea Aquca_002_00952 I 0.864
Aquca_006_00387 Aquilegia coerulea Aquca_006_00387 I 0.858
Bostr.0568s0133 Boechera stricta Bostr.0568s0133 I 0.856
Bostr.10273s0468 Boechera stricta Bostr.10273s0468 I 0.884
Bostr.13129s0152 Boechera stricta Bostr.13129s0152 I 0.864
Cagra.1157s0023 Capsella grandiflora Cagra.1157s0023 I 0.884
Cagra.1365s0019 Capsella grandiflora Cagra.1365s0019 I 0.864
Carubv10000655m.g Capsella rubella Carubv10000655m.g I 0.864
Carubv10020679m.g Capsella rubella Carubv10020679m.g I 0.884
Carubv10028570m.g Capsella rubella Carubv10028570m.g I 0.856
Ciclev10012135m.g Citrus clementina Ciclev10012135m.g I 0.860
Ciclev10020248m.g Citrus clementina Ciclev10020248m.g I 0.894
Ciclev10032020m.g Citrus clementina Ciclev10032020m.g I 0.914
Eucgr.B00645 Eucalyptus grandis Eucgr.B00645 I 0.864
Eucgr.B03113 Eucalyptus grandis Eucgr.B03113 I 0.884
Eucgr.I02069 Eucalyptus grandis Eucgr.I02069 I 0.884
evm.TU.supercontig_289.6 Carica papaya evm.TU.supercontig_289.6 I 0.901
evm.TU.supercontig_3.225 Carica papaya evm.TU.supercontig_3.225 I 0.894
gene04534-v1.0-hybrid Fragaria vesca gene04534-v1.0-hybrid I 0.914
gene09125-v1.0-hybrid Fragaria vesca gene09125-v1.0-hybrid I 0.856
gene26139-v1.0-hybrid Fragaria vesca gene26139-v1.0-hybrid I 0.870
Gorai.001G197500 Gossypium raimondii Gorai.001G197500 I 0.884
Gorai.006G269200 Gossypium raimondii Gorai.006G269200 I 0.851
Gorai.007G040600 Gossypium raimondii Gorai.007G040600 I 0.864
Gorai.009G327300 Gossypium raimondii Gorai.009G327300 I 0.884
Gorai.013G098000 Gossypium raimondii Gorai.013G098000 I 0.884
Lus10004630.g Linum usitatissimum Lus10004630.g I 0.884
Lus10007974.g Linum usitatissimum Lus10007974.g I 0.858
Lus10013502.g Linum usitatissimum Lus10013502.g I 0.858
Lus10026684.g Linum usitatissimum Lus10026684.g I 0.884
Lus10034358.g Linum usitatissimum Lus10034358.g I 0.860
MDP0000261293 Malus domestica MDP0000261293 I 0.914
orange1.1g019485m.g Citrus sinensis orange1.1g019485m.g I 0.860
orange1.1g019960m.g Citrus sinensis orange1.1g019960m.g I 0.914
orange1.1g038451m.g Citrus sinensis orange1.1g038451m.g I 0.894
Pavir.Aa00700 Panicum virgatum Pavir.Aa00700 I 0.856
Pavir.Ab03017 Panicum virgatum Pavir.Ab03017 I 0.856
Pavir.Fb01833 Panicum virgatum Pavir.Fb01833 I 0.861
Pavir.J04606 Panicum virgatum Pavir.J04606 I 0.865
Pavir.J15575 Panicum virgatum Pavir.J15575 I 0.856
Pavir.J38250 Panicum virgatum Pavir.J38250 I 0.856
Pavir.J38910 Panicum virgatum Pavir.J38910 I 0.861
SapurV1A.0060s0510 Salix purpurea SapurV1A.0060s0510 I 0.912
SapurV1A.0084s0570 Salix purpurea SapurV1A.0084s0570 I 0.914
SapurV1A.0178s0150 Salix purpurea SapurV1A.0178s0150 I 0.894
SapurV1A.0274s0040 Salix purpurea SapurV1A.0274s0040 I 0.884
SapurV1A.0868s0010 Salix purpurea SapurV1A.0868s0010 I 0.894
SapurV1A.2517s0020 Salix purpurea SapurV1A.2517s0020 I 0.884
Thhalv10004889m.g Eutrema salsugineum Thhalv10004889m.g I 0.856
Thhalv10013181m.g Eutrema salsugineum Thhalv10013181m.g I 0.864
Thhalv10018889m.g Eutrema salsugineum Thhalv10018889m.g I 0.884
Thhalv10027863m.g Eutrema salsugineum Thhalv10027863m.g I 0.884
PK00238.1 Cannabis sativa PK00238.1 I 0.884
PK01364.1 Cannabis sativa PK01364.1 I 0.912
PK10562.1 Cannabis sativa PK10562.1 I 0.864