Cucsa.255290 (Cucumis sativus)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Cucsa.255290 T048208_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BHLH104
M01706_2.00 		Arabidopsis thaliana
GGCACGTGCC
GGCACGTGCC		 PBM
Weirauch et al.(2014)
pTH7365 		0.857 0.745
BHLH104
M06737_2.00 		Arabidopsis thaliana
GVCACGTGBMDDBHNSDNBH
DVNHSNDVHHKVCACGTGBC		 Dap-seq
OMalley et al.(2016)
bHLH104_col_b 		0.857 0.745
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.255290.1 bHLH 73 123

Links

Other bHLH family TFs
Other Cucumis sativus TFs

26 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BHLH104 Arabidopsis thaliana AT4G14410 D 0.857
Bostr.0597s0053 Boechera stricta Bostr.0597s0053 I 0.857
Thhalv10025927m.g Eutrema salsugineum Thhalv10025927m.g I 0.857
Lus10022186.g Linum usitatissimum Lus10022186.g I 0.889
gene11436-v1.0-hybrid Fragaria vesca gene11436-v1.0-hybrid I 0.839
evm.TU.supercontig_44.78 Carica papaya evm.TU.supercontig_44.78 I 0.842
Carubv10005335m.g Capsella rubella Carubv10005335m.g I 0.857
Cagra.1718s0002 Capsella grandiflora Cagra.1718s0002 I 0.857
Cla021854 Citrullus lanatus Cla021854 I 0.914
Ca_23174 Cicer arietinum Ca_23174 I 0.869
MTR_1g043430 Medicago truncatula MTR_1g043430 I 0.869
bHLH104 Arabidopsis lyrata fgenesh2_kg.7__2895__AT4G14410.2 I 0.857
Bra041033 Brassica rapa Bra041033 I 0.854
Bra014923 Brassica rapa Bra014923 I 0.839
Bo7g040830 Brassica oleracea Bo7g040830 I 0.839
Bo4g126940 Brassica oleracea Bo4g126940 I 0.875
Bo1g102270 Brassica oleracea Bo1g102270 I 0.839
POPTR_0010s08360 Populus trichocarpa POPTR_0010s08360 N 0.866
POPTR_0008s16560 Populus trichocarpa POPTR_0008s16560 N 0.842
cassava35418.valid.m1 Manihot esculenta cassava35418.valid.m1 N 0.865
Eucgr.H00174 Eucalyptus grandis Eucgr.H00174 N 0.866
Lus10021199.g Linum usitatissimum Lus10021199.g N 0.854
Lus10021876.g Linum usitatissimum Lus10021876.g N 0.854
Lus10041148.g Linum usitatissimum Lus10041148.g N 0.854
SapurV1A.0007s0940 Salix purpurea SapurV1A.0007s0940 N 0.866
SapurV1A.0292s0060 Salix purpurea SapurV1A.0292s0060 N 0.866