estExt_fgenesh2_pg.C_2000006 (Branchiostoma floridae)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 estExt_fgenesh2_pg.C_2000006 T048384_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Fer3
M05993_2.00 		Drosophila melanogaster
GKVACAGVTG
CABCTGTBMC		 B1H
Zhu et al.(2011)
Fer3_da_SANGER_5_FBgn0037937 		0.870 0.846
FERD3L
M04140_2.00 		Homo sapiens
GYVACAGCTGKYRC
GYRMCAGCTGTBRC		 SELEX
Yin et al.(2017)
FERD3L_FL_HT-SELEX_1 		0.870 0.808
FERD3L
M04141_2.00 		Homo sapiens
GTRMCAKMTGKYRC
GYRMCAKMTGKYAC		 SELEX
Yin et al.(2017)
FERD3L_FL_HT-SELEX_2 		0.870 0.808
FERD3L
M04142_2.00 		Homo sapiens
GTVACAGCTGKYRC
GYRMCAGCTGTBAC		 SELEX
Yin et al.(2017)
FERD3L_FL_Methyl-HT-SELEX_1 		0.870 0.808
FERD3L
M04143_2.00 		Homo sapiens
GTRMCAKMTGKYRC
GYRMCAKMTGKYAC		 SELEX
Yin et al.(2017)
FERD3L_FL_Methyl-HT-SELEX_2 		0.870 0.808
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh2_pg.C_2000006 bHLH 205 257

Links

Other bHLH family TFs
Other Branchiostoma floridae TFs

113 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
PC-MYB1 Arabidopsis thaliana AT4G32730 D 0.000
PK12011.1 Cannabis sativa PK12011.1 D 0.000
Q948S4_TOBAC Nicotiana tabacum Q948S4_TOBAC D 0.000
Q948S5_TOBAC Nicotiana tabacum Q948S5_TOBAC D 0.000
cassava40167.m1 Manihot esculenta cassava40167.m1 I 0.000
evm.TU.supercontig_78.76 Carica papaya evm.TU.supercontig_78.76 I 0.000
Eucgr.C02893 Eucalyptus grandis Eucgr.C02893 I 0.000
Ciclev10007316m.g Citrus clementina Ciclev10007316m.g I 0.000
Bostr.7867s1124 Boechera stricta Bostr.7867s1124 I 0.000
Aquca_013_00366 Aquilegia coerulea Aquca_013_00366 I 0.000
e_gw1.36.4.1 Physcomitrella patens e_gw1.36.4.1 I 0.000
e_gw1.120.1.1 Physcomitrella patens e_gw1.120.1.1 I 0.000
Cucsa.161430 Cucumis sativus Cucsa.161430 I 0.000
gene08793-v1.0-hybrid Fragaria vesca gene08793-v1.0-hybrid I 0.000
29794.m003447 Ricinus communis 29794.m003447 I 0.000
Pm018007 Prunus mume Pm018007 I 0.000
Cla022565 Citrullus lanatus Cla022565 I 0.000
Pm005124 Prunus mume Pm005124 I 0.000
gene19115-v1.0-hybrid Fragaria vesca gene19115-v1.0-hybrid I 0.000
Gorai.001G028200 Gossypium raimondii Gorai.001G028200 I 0.000
Gorai.009G051000 Gossypium raimondii Gorai.009G051000 I 0.000
Gorai.010G110000 Gossypium raimondii Gorai.010G110000 I 0.000
MDP0000179225 Malus domestica MDP0000179225 I 0.000
MDP0000295807 Malus domestica MDP0000295807 I 0.000
Pavir.Ea00087 Panicum virgatum Pavir.Ea00087 I 0.000
Pavir.Ea03349 Panicum virgatum Pavir.Ea03349 I 0.000
Pavir.Eb00149 Panicum virgatum Pavir.Eb00149 I 0.000
Pavir.Eb03676 Panicum virgatum Pavir.Eb03676 I 0.000
SapurV1A.0283s0180 Salix purpurea SapurV1A.0283s0180 I 0.000
SapurV1A.0446s0220 Salix purpurea SapurV1A.0446s0220 I 0.000
PK22174.1 Cannabis sativa PK22174.1 I 0.000
PDK_20s1371143g001 Phoenix dactylifera PDK_20s1371143g001 I 0.000
PC-MYB1 Arabidopsis lyrata fgenesh2_kg.7__866__AT4G32730.2 I 0.000
OPUNC01G08000 Oryza punctata OPUNC01G08000 I 0.000
Ca_14925 Cicer arietinum Ca_14925 I 0.000
ONIVA01G10670 Oryza nivara ONIVA01G10670 I 0.000
OLONG_011886 Oryza longistaminata OLONG_011886 I 0.000
OGLUM01G09290 Oryza glumaepatula OGLUM01G09290 I 0.000
OBART01G08110 Oryza barthii OBART01G08110 I 0.000
OB12G16480 Oryza brachyantha OB12G16480 I 0.000
OB01G18340 Oryza brachyantha OB01G18340 I 0.000
OPUNC01G07980 Oryza punctata OPUNC01G07980 I 0.000
F775_05724 Aegilops tauschii F775_05724 I 0.000
Bra034531 Brassica rapa Bra034531 I 0.000
Bra006102 Brassica rapa Bra006102 I 0.000
Bo7g115810 Brassica oleracea Bo7g115810 I 0.000
Bo3g179620 Brassica oleracea Bo3g179620 I 0.000
Bo3g171130 Brassica oleracea Bo3g171130 I 0.000
Bo3g007070 Brassica oleracea Bo3g007070 I 0.000
ORGLA01G0073200 Oryza glaberrima ORGLA01G0073200 I 0.000
ORGLA12G0066300 Oryza glaberrima ORGLA12G0066300 I 0.000
VIT_04s0008g03780 Vitis vinifera VIT_04s0008g03780 I 0.000
OS12G0238000 Oryza sativa OS12G0238000 I 0.000
POPTR_0006s25840 Populus trichocarpa POPTR_0006s25840 I 0.000
TRIUR3_24658 Triticum urartu TRIUR3_24658 I 0.000
POPTR_0018s00710 Populus trichocarpa POPTR_0018s00710 I 0.000
PRUPE_ppa000676mg Prunus persica PRUPE_ppa000676mg I 0.000
Si000842m.g Setaria italica Si000842m.g I 0.000
TCM_005402 Theobroma cacao TCM_005402 I 0.000
TCM_047091 Theobroma cacao TCM_047091 I 0.000
Traes_3AS_09025DA2E Triticum aestivum Traes_3AS_09025DA2E I 0.000
TRAES3BF049800070CFD_g Triticum aestivum TRAES3BF049800070CFD_g I 0.000
ATMYB3R2 Vitis vinifera VIT_15s0048g02120 N 0.000
SapurV1A.0586s0030 Salix purpurea SapurV1A.0586s0030 N 0.000
SapurV1A.0533s0050 Salix purpurea SapurV1A.0533s0050 N 0.000
ATMYB3R2 Populus trichocarpa POPTR_0014s07520 N 0.000
Gorai.008G117400 Gossypium raimondii Gorai.008G117400 N 0.000
evm.TU.supercontig_18.208 Carica papaya evm.TU.supercontig_18.208 N 0.000