ENSPSIG00000011787 (Pelodiscus sinensis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 ENSPSIG00000011787 T107657_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Osr2
M00132_2.00 		Mus musculus
NGCTWCYGNN
NNCRGWAGCN		 PBM
Badis et al.(2009)
Osr2_1727 		0.827 1.000
Osr1
M00144_2.00 		Mus musculus
NVCTHCYNN
NNRGDAGBN		 PBM
Badis et al.(2009)
Osr1_3033 		0.811 0.986
Osr1
M01174_2.00 		Mus musculus
GCTACYGT
ACRGTAGC		 PBM
Lambert et al.(2019)
pTH5339 		0.811 0.986
OSR1
M04477_2.00 		Homo sapiens
NGCTACYGTD
HACRGTAGCN		 SELEX
Yin et al.(2017)
OSR1_eDBD_HT-SELEX 		0.811 0.986
OSR1
M04478_2.00 		Homo sapiens
NGCTACYGTD
HACRGTAGCN		 SELEX
Yin et al.(2017)
OSR1_eDBD_Methyl-HT-SELEX 		0.811 0.986
odd-2
M00618_2.00 		Caenorhabditis elegans
NGCTACYGK
MCRGTAGCN		 PBM
Narasimhan et al.(2015)
pTH9150 		0.770 0.826
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSPSIP00000013093 C2H2 ZF 172 194
ENSPSIP00000013093 C2H2 ZF 200 222
ENSPSIP00000013093 C2H2 ZF 228 250

Links

Other C2H2 ZF family TFs
Other Pelodiscus sinensis TFs

135 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ILR3 Arabidopsis thaliana AT5G54680 D 0.000
Bostr.26833s0797 Boechera stricta Bostr.26833s0797 I 0.000
Cla001735 Citrullus lanatus Cla001735 I 0.000
Pm029465 Prunus mume Pm029465 I 0.000
28166.m001054 Ricinus communis 28166.m001054 I 0.000
cassava24574.valid.m1 Manihot esculenta cassava24574.valid.m1 I 0.000
cassava37031.valid.m1 Manihot esculenta cassava37031.valid.m1 I 0.000
cassava37032.valid.m1 Manihot esculenta cassava37032.valid.m1 I 0.000
Cucsa.267130 Cucumis sativus Cucsa.267130 I 0.000
Cucsa.267170 Cucumis sativus Cucsa.267170 I 0.000
e_gw1.229.33.1 Physcomitrella patens e_gw1.229.33.1 I 0.000
estExt_gwp_gw1.C_2460032 Physcomitrella patens estExt_gwp_gw1.C_2460032 I 0.000
fgenesh1_pg.scaffold_13000185 Physcomitrella patens fgenesh1_pg.scaffold_13000185 I 0.000
mgf009119m Mimulus guttatus mgf009119m I 0.000
mgf012088m Mimulus guttatus mgf012088m I 0.000
Aquca_005_00425 Aquilegia coerulea Aquca_005_00425 I 0.000
Ca_16355 Cicer arietinum Ca_16355 I 0.000
Cagra.1629s0040 Capsella grandiflora Cagra.1629s0040 I 0.000
Carubv10026758m.g Capsella rubella Carubv10026758m.g I 0.000
Ciclev10009354m.g Citrus clementina Ciclev10009354m.g I 0.000
Eucgr.F03420 Eucalyptus grandis Eucgr.F03420 I 0.000
evm.TU.supercontig_97.78 Carica papaya evm.TU.supercontig_97.78 I 0.000
gene03303-v1.0-hybrid Fragaria vesca gene03303-v1.0-hybrid I 0.000
SapurV1A.0712s0010 Salix purpurea SapurV1A.0712s0010 I 0.000
Gorai.002G081900 Gossypium raimondii Gorai.002G081900 I 0.000
Gorai.013G164100 Gossypium raimondii Gorai.013G164100 I 0.000
Lus10011167.g Linum usitatissimum Lus10011167.g I 0.000
Lus10043076.g Linum usitatissimum Lus10043076.g I 0.000
MDP0000264803 Malus domestica MDP0000264803 I 0.000
orange1.1g026599m.g Citrus sinensis orange1.1g026599m.g I 0.000
GSMUA_Achr8G33180_001 Musa acuminata GSMUA_Achr8G33180_001 I 0.000
AMTR_s00009p00175450 Amborella trichopoda AMTR_s00009p00175450 I 0.000
Bo3g021940 Brassica oleracea Bo3g021940 I 0.000
Bra002964 Brassica rapa Bra002964 I 0.000
Bra022738 Brassica rapa Bra022738 I 0.000
Bra029011 Brassica rapa Bra029011 I 0.000
ILR3 Arabidopsis lyrata fgenesh2_kg.8__1365__AT5G54680.1 I 0.000
GLYMA06G41620 Glycine max GLYMA06G41620 I 0.000
PK23013.1 Cannabis sativa PK23013.1 I 0.000
GLYMA12G34300 Glycine max GLYMA12G34300 I 0.000
GLYMA13G36260 Glycine max GLYMA13G36260 I 0.000
GLYMA15G06803 Glycine max GLYMA15G06803 I 0.000
GLYMA15G06860 Glycine max GLYMA15G06860 I 0.000
MTR_2g082640 Medicago truncatula MTR_2g082640 I 0.000
SELMODRAFT_165556 Selaginella moellendorffii SELMODRAFT_165556 I 0.000
Ca_06956 Cicer arietinum Ca_06956 I 0.000
VIT_12s0059g02650 Vitis vinifera VIT_12s0059g02650 I 0.000
Thhalv10014564m.g Eutrema salsugineum Thhalv10014564m.g I 0.000
TCM_031118 Theobroma cacao TCM_031118 I 0.000
TCM_030082 Theobroma cacao TCM_030082 I 0.000
Solyc07g064040.2 Solanum lycopersicum Solyc07g064040.2 I 0.000
MTR_4g081370 Medicago truncatula MTR_4g081370 I 0.000
SELMODRAFT_165311 Selaginella moellendorffii SELMODRAFT_165311 I 0.000
PRUPE_ppa010730mg Prunus persica PRUPE_ppa010730mg I 0.000
PRUPE_ppa009077mg Prunus persica PRUPE_ppa009077mg I 0.000
POPTR_0011s13580 Populus trichocarpa POPTR_0011s13580 I 0.000
POPTR_0001s44230 Populus trichocarpa POPTR_0001s44230 I 0.000
SapurV1A.3390s0010 Salix purpurea SapurV1A.3390s0010 N 0.000
chr3.CM0155.80.nd Lotus japonicus chr3.CM0155.80.nd N 0.000
SapurV1A.0535s0060 Salix purpurea SapurV1A.0535s0060 N 0.000
PDK_20s1322801g004 Phoenix dactylifera PDK_20s1322801g004 N 0.000
orange1.1g026646m.g Citrus sinensis orange1.1g026646m.g N 0.000
MDP0000323291 Malus domestica MDP0000323291 N 0.000
Gorai.002G016500 Gossypium raimondii Gorai.002G016500 N 0.000
Ciclev10016381m.g Citrus clementina Ciclev10016381m.g N 0.000
VIT_00s0532g00050 Vitis vinifera VIT_00s0532g00050 N 0.000
GLYMA12G16560 Glycine max GLYMA12G16560 N 0.000
AMTR_s00098p00170370 Amborella trichopoda AMTR_s00098p00170370 N 0.000
AMTR_s00029p00112130 Amborella trichopoda AMTR_s00029p00112130 N 0.000