CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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gw1.73.24.1
(
Phycomyces blakesleeanus
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
gw1.73.24.1
T140110_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
RO3G_05801
M01434_2.00
Rhizopus oryzae
NNGATYNNCN
NGNNRATCNN
PBM
Najafabadi et al.(2015a)
pTH10221
0.768
0.848
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
gw1.73.24.1
C2H2 ZF
1
23
YCCTFCHKKFSRPSSLRIHTYSH
gw1.73.24.1
C2H2 ZF
29
53
FVCTEENCGRKFSVQSNMRRHLRVH
Links
Other
C2H2 ZF
family TFs
Other
Phycomyces blakesleeanus
TFs
15 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Traes_4BL_011308A76
Triticum aestivum
Traes_4BL_011308A76
I
0.000
C1orf35
Otolemur garnettii
ENSOGAG00000010978
I
0.000
RGD1304587
Rattus norvegicus
ENSRNOG00000002944
I
0.000
OMERI10G00680
Oryza meridionalis
OMERI10G00680
I
0.000
OGLUM10G00640
Oryza glumaepatula
OGLUM10G00640
N
0.000
Si036337m.g
Setaria italica
Si036337m.g
N
0.000
OS10G0115500
Oryza sativa
OS10G0115500
N
0.000
OS10G0115200
Oryza sativa
OS10G0115200
N
0.000
OS10G0114500
Oryza sativa
OS10G0114500
N
0.000
OS03G0237401
Oryza sativa
OS03G0237401
N
0.000
ORUFI10G00650
Oryza rufipogon
ORUFI10G00650
N
0.000
OPUNC10G00600
Oryza punctata
OPUNC10G00600
N
0.000
OPUNC03G13410
Oryza punctata
OPUNC03G13410
N
0.000
ONIVA10G01090
Oryza nivara
ONIVA10G01090
N
0.000
ONIVA10G01080
Oryza nivara
ONIVA10G01080
N
0.000
OMERI10G00690
Oryza meridionalis
OMERI10G00690
N
0.000
OLONG_022525
Oryza longistaminata
OLONG_022525
N
0.000
BGIOSGA032378
Oryza indica
BGIOSGA032378
N
0.000
OGLUM10G00630
Oryza glumaepatula
OGLUM10G00630
N
0.000
OGLUM10G00620
Oryza glumaepatula
OGLUM10G00620
N
0.000
OBART10G00650
Oryza barthii
OBART10G00650
N
0.000
OBART10G00640
Oryza barthii
OBART10G00640
N
0.000
OB10G10650
Oryza brachyantha
OB10G10650
N
0.000
OB10G10530
Oryza brachyantha
OB10G10530
N
0.000
LPERR10G00510
Leersia perrieri
LPERR10G00510
N
0.000
LPERR10G00500
Leersia perrieri
LPERR10G00500
N
0.000
GRMZM2G166230
Zea mays
GRMZM2G166230
N
0.000
BRADI3G21390
Brachypodium distachyon
BRADI3G21390
N
0.000
BRADI3G21380
Brachypodium distachyon
BRADI3G21380
N
0.000
BGIOSGA032380
Oryza indica
BGIOSGA032380
N
0.000