Rbpj (Rattus norvegicus)
CSL

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF09271 (LAG1-DNAbind) IPR015351 ENSRNOG00000046327 T166124_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RBPJ
M00735_2.00 		Homo sapiens
NNNBTCHCAN
NTGDGAVNNN		 PBM
DelBianco et al.(2010)
GST-CSL_Fig2 		1.000 1.000
RBPJ
M00736_2.00 		Homo sapiens
NNNYTCHCAN
NTGDGARNNN		 PBM
DelBianco et al.(2010)
GST-CSL_Fig4 		1.000 1.000
RBPJ
M00737_2.00 		Homo sapiens
NNNBTCHCAN
NTGDGAVNNN		 PBM
DelBianco et al.(2010)
GST-CSL-NOTCH1 		1.000 1.000
RBPJ
M00738_2.00 		Homo sapiens
NBTCHCAN
NTGDGAVN		 PBM
DelBianco et al.(2010)
GST-NOTCH1_CSL-6His_MAML1 		1.000 1.000
RBPJ
M00739_2.00 		Homo sapiens
NNBTCHCAN
NTGDGAVNN		 PBM
DelBianco et al.(2010)
GST-NOTCH1_CSL-6His 		1.000 1.000
RBPJ
M00740_2.00 		Homo sapiens
NNNYTCYCAN
NTGRGARNNN		 PBM
DelBianco et al.(2010)
GST-NOTCH1_Fig2 		1.000 1.000
RBPJ
M00741_2.00 		Homo sapiens
NNNBTCHCAN
NTGDGAVNNN		 PBM
DelBianco et al.(2010)
MAML1-CSL-GST-NOTCH1_Fig2 		1.000 1.000
RBPJ
M00742_2.00 		Homo sapiens
NDYTCHCAB
VTGDGARHN		 PBM
DelBianco et al.(2010)
MAML1-CSL-GST-NOTCH1_Fig5 		1.000 1.000
RBPJ
M08105_2.00 		Homo sapiens
NNTTCCCABN
NVTGGGAANN		 ChIP-seq
Mathelier et al.(2014)
MA1116.1 		1.000 1.000
RBPJ
M09020_2.00 		Homo sapiens
BTTCCCASVVN
NBBSTGGGAAV		 Misc
Kulakovskiy et al.(2013)
SUH_HUMAN.H11MO.0.A 		1.000 1.000
Rbpj
M09021_2.00 		Mus musculus
NBTTCCCASVV
BBSTGGGAAVN		 Misc
Kulakovskiy et al.(2013)
SUH_MOUSE.H11MO.0.A 		1.000 1.000
RBPJ
M10413_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RBPJK_01 		1.000 1.000
RBPJ
M10414_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$RBPJK_Q4 		1.000 1.000
Su(H)
M10415_2.00 		Drosophila melanogaster
VGKTTCYCACRVY
RBYGTGRGAAMCB		 Transfac
Matys et al.(2006)
I$SUH_01 		0.794 0.794
Su(H)
M08455_2.00 		Drosophila melanogaster
HBHNVGKTTCYCACRV
BYGTGRGAAMCBNDVD		 COMPILED
Mathelier et al.(2014)
MA0085.1 		0.794 0.794
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000065485 CSL 13 143

Links

Other CSL family TFs
Other Rattus norvegicus TFs

165 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGL62 Arabidopsis thaliana AT5G60440 I 0.000
gene30567-v1.0-hybrid Fragaria vesca gene30567-v1.0-hybrid I 0.000
evm.TU.supercontig_1259.1 Carica papaya evm.TU.supercontig_1259.1 N 0.000
evm.TU.contig_27313 Carica papaya evm.TU.contig_27313 N 0.000
evm.TU.contig_28241.1 Carica papaya evm.TU.contig_28241.1 N 0.000
evm.TU.contig_33091.2 Carica papaya evm.TU.contig_33091.2 N 0.000
evm.TU.contig_35157.1 Carica papaya evm.TU.contig_35157.1 N 0.000
evm.TU.contig_35697 Carica papaya evm.TU.contig_35697 N 0.000
evm.TU.contig_35713 Carica papaya evm.TU.contig_35713 N 0.000
evm.TU.contig_35751 Carica papaya evm.TU.contig_35751 N 0.000
evm.TU.contig_37271 Carica papaya evm.TU.contig_37271 N 0.000
Carubv10028580m.g Capsella rubella Carubv10028580m.g N 0.000
evm.TU.supercontig_20.86 Carica papaya evm.TU.supercontig_20.86 N 0.000
evm.TU.supercontig_347.11 Carica papaya evm.TU.supercontig_347.11 N 0.000
evm.TU.supercontig_347.7 Carica papaya evm.TU.supercontig_347.7 N 0.000
evm.TU.supercontig_348.3 Carica papaya evm.TU.supercontig_348.3 N 0.000
evm.TU.supercontig_348.8 Carica papaya evm.TU.supercontig_348.8 N 0.000
evm.TU.supercontig_654.4 Carica papaya evm.TU.supercontig_654.4 N 0.000
evm.TU.supercontig_654.6 Carica papaya evm.TU.supercontig_654.6 N 0.000
SapurV1A.0019s0690 Salix purpurea SapurV1A.0019s0690 N 0.000
Cla006571 Citrullus lanatus Cla006571 N 0.000
Bra002480 Brassica rapa Bra002480 N 0.000
F775_23542 Aegilops tauschii F775_23542 N 0.000
PGSC0003DMG400036006 Solanum tuberosum PGSC0003DMG400036006 N 0.000
PGSC0003DMG400040625 Solanum tuberosum PGSC0003DMG400040625 N 0.000
Solyc01g106730.1 Solanum lycopersicum Solyc01g106730.1 N 0.000
Solyc04g025050.1 Solanum lycopersicum Solyc04g025050.1 N 0.000
TCM_006323 Theobroma cacao TCM_006323 N 0.000
VIT_03s0088g00610 Vitis vinifera VIT_03s0088g00610 N 0.000
Cagra.2519s0016 Capsella grandiflora Cagra.2519s0016 N 0.000
Cla019897 Citrullus lanatus Cla019897 N 0.000
Pm030654 Prunus mume Pm030654 N 0.000
30099.m001672 Ricinus communis 30099.m001672 N 0.000
cassava21387.m1 Manihot esculenta cassava21387.m1 N 0.000
Cucsa.298560 Cucumis sativus Cucsa.298560 N 0.000
Aquca_041_00050 Aquilegia coerulea Aquca_041_00050 N 0.000
Aquca_054_00126 Aquilegia coerulea Aquca_054_00126 N 0.000
Bostr.26833s0197 Boechera stricta Bostr.26833s0197 N 0.000