CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

csin111139 *(Clonorchis sinensis)* Forkhead
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00250 (Forkhead)	IPR001766	csin111139	T190396_2.00	WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
fd64A M06197_2.00	Drosophila melanogaster	KVWAAACA	TGTTTWBM	B1H Zhu et al.(2011) fd64A_SANGER_5_FBgn0004895	0.751	0.721
foxe3 M01228_2.00	Xenopus tropicalis	WNNVHHMAYW	WRTKDDBNNW	PBM Lambert et al.(2019) pTH9824	0.745	0.709
FOXC1 M00257_2.00	Homo sapiens	NNNVHHAAYA	TRTTDDBNNN	PBM Barrera et al.(2016) FOXC1_REF	0.744	0.744
Foxc1 M01982_2.00	Mus musculus	HNNRHMAAYA	TRTTKDYNND	PBM Weirauch et al.(2014) pTH2673	0.744	0.744
FOXC1 M03013_2.00	Homo sapiens	AWRTAAAYAAAYA	TRTTTRTTTAYWT	SELEX Jolma et al.(2013) FOXC1_1	0.744	0.744
FOXC1 M03014_2.00	Homo sapiens	NRWMAATATTKWYN	NRWMAATATTKWYN	SELEX Jolma et al.(2013) FOXC1_2	0.744	0.744
FOXC1 M03015_2.00	Homo sapiens	WRWRTMAAYAW	WTRTTKAYWYW	SELEX Jolma et al.(2013) FOXC1_3	0.744	0.744
Foxc1 M03059_2.00	Mus musculus	RTAAAYAAACA	TGTTTRTTTAY	SELEX Jolma et al.(2013) Foxc1_1	0.744	0.744
Foxc1 M03060_2.00	Mus musculus	RTAAACA	TGTTTAY	SELEX Jolma et al.(2013) Foxc1_2	0.744	0.744
FOXC1 M09083_2.00	Homo sapiens	SBWAWRTAAACADHN	NDHTGTTTAYWTWVS	Misc Kulakovskiy et al.(2013) FOXC1_HUMAN.H11MO.0.C	0.744	0.744
Foxc1 M09111_2.00	Mus musculus	SBWAWRTAAACADHN	NDHTGTTTAYWTWVS	Misc Kulakovskiy et al.(2013) FOXC1_MOUSE.H11MO.0.C	0.744	0.744
FOXC1 M10525_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FOXC1_Q4	0.744	0.744
FOXC1 M10526_2.00	Homo sapiens	TSTTTATTTACDBNVN	NBNVHGTAAATAAASA	Transfac Matys et al.(2006) V$FREAC3_01	0.744	0.744
FOXC1 M00253_2.00	Homo sapiens	NNHATAAWHAN	NTDWTTATDNN	PBM Barrera et al.(2016) FOXC1_F112S	0.744	0.733
FOXC1 M00255_2.00	Homo sapiens	NRTATATWHNNN	NNNDWATATAYN	PBM Barrera et al.(2016) FOXC1_L130F	0.744	0.733
FOXC1 M00256_2.00	Homo sapiens	NNNNWWTYAMAWN	NWTKTRAWWNNNN	PBM Barrera et al.(2016) FOXC1_P79L	0.744	0.733
FOXC1 M00258_2.00	Homo sapiens	NNNAMAAYANN	NNTRTTKTNNN	PBM Barrera et al.(2016) FOXC1_S131L	0.744	0.733
FOXC1 M00259_2.00	Homo sapiens	RTAAACAW	WTGTTTAY	PBM Barrera et al.(2016) FOXC1_S82T	0.744	0.733
Gm5294 M01984_2.00	Mus musculus	NNKRTAAACANN	NNTGTTTAYMNN	PBM Weirauch et al.(2014) pTH3802	0.742	0.605
Foxc2 M00796_2.00	Mus musculus	HNNRHMAAYA	TRTTKDYNND	PBM Weirauch et al.(2013) pTH3796	0.735	0.733
FOXC2 M03036_2.00	Homo sapiens	NRTMAATATTDWYN	NRWHAATATTKAYN	SELEX Jolma et al.(2013) FOXC2_1	0.735	0.733
FOXC2 M03037_2.00	Homo sapiens	RTAAAYAAACA	TGTTTRTTTAY	SELEX Jolma et al.(2013) FOXC2_2	0.735	0.733
FOXC2 M03038_2.00	Homo sapiens	WAHRTMAAYAWW	WWTRTTKAYDTW	SELEX Jolma et al.(2013) FOXC2_3	0.735	0.733
FOXC2 M04841_2.00	Homo sapiens	NHVNRYMAACAH	DTGTTKRYNBDN	SELEX Yin et al.(2017) FOXC2_eDBD_HT-SELEX_1	0.735	0.733
FOXC2 M04842_2.00	Homo sapiens	RHAMAYAAACAH	DTGTTTRTKTDY	SELEX Yin et al.(2017) FOXC2_eDBD_HT-SELEX_2	0.735	0.733
FOXC2 M10559_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FKHL14_Q2	0.735	0.733
FOXC2 M04843_2.00	Homo sapiens	NHNNRYMAACAN	NTGTTKRYNNDN	SELEX Yin et al.(2017) FOXC2_eDBD_Methyl-HT-SELEX_1	0.735	0.733
FOXC2 M04844_2.00	Homo sapiens	VHMMAYAAACAN	NTGTTTRTKKDB	SELEX Yin et al.(2017) FOXC2_eDBD_Methyl-HT-SELEX_2	0.735	0.733
FOXE1 M04845_2.00	Homo sapiens	BVYTAWRYAAACADN	NHTGTTTRYWTARBV	SELEX Yin et al.(2017) FOXE1_eDBD_HT-SELEX	0.727	0.721
FOXE1 M04846_2.00	Homo sapiens	BVYTAARYAAACAWH	DWTGTTTRYTTARBV	SELEX Yin et al.(2017) FOXE1_eDBD_Methyl-HT-SELEX	0.727	0.721
FOXD3 M03044_2.00	Homo sapiens	NRTMAAYRTTWDYN	NRHWAAYRTTKAYN	SELEX Jolma et al.(2013) FOXD3_1	0.726	0.651
FOXD3 M03045_2.00	Homo sapiens	RTAAAYA	TRTTTAY	SELEX Jolma et al.(2013) FOXD3_2	0.726	0.651
FOXD3 M04855_2.00	Homo sapiens	VHWRHRTAMACW	WGTKTAYDYWDB	SELEX Yin et al.(2017) FOXD3_eDBD_HT-SELEX	0.726	0.651
Foxd3 M09114_2.00	Mus musculus	DVNWRDRNAAACAVN	NBTGTTTNYHYWNBH	Misc Kulakovskiy et al.(2013) FOXD3_MOUSE.H11MO.0.C	0.726	0.651
FOXD3 M10565_2.00	Homo sapiens	RADHAAAYAWWH	DWWTRTTTDHTY	Transfac Matys et al.(2006) V$FOXD3_01	0.726	0.651
FOXD3 M10566_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HFH2_Q5	0.726	0.651
FOXD3 M04856_2.00	Homo sapiens	VYWRHRTAAACW	WGTTTAYDYWRB	SELEX Yin et al.(2017) FOXD3_eDBD_Methyl-HT-SELEX	0.726	0.651
FOXC1 M00254_2.00	Homo sapiens	RRTAAACANN	NNTGTTTAYY	PBM Barrera et al.(2016) FOXC1_I126M	0.719	0.733
FOXL1 M03034_2.00	Homo sapiens	RTAAACA	TGTTTAY	SELEX Jolma et al.(2013) FOXL1_1	0.717	0.756
FOXL1 M03035_2.00	Homo sapiens	NRTAAAYAAAYAN	NTRTTTRTTTAYN	SELEX Jolma et al.(2013) FOXL1_2	0.717	0.756
FOXL1 M10558_2.00	Homo sapiens	DHNVHATAAAYAHNNN	NNNDTRTTTATDBNDH	Transfac Matys et al.(2006) V$FREAC7_01	0.717	0.756
Foxl1 M00164_2.00	Mus musculus	NNNRTMAAYA	TRTTKAYNNN	PBM Badis et al.(2009) Foxl1_2809	0.717	0.744
fd59A M03739_2.00	Drosophila melanogaster	HWAWRTAAACAWW	WWTGTTTAYWTWD	SELEX Nitta et al.(2015) fd59A_1	0.716	0.651
fd59A M03740_2.00	Drosophila melanogaster	WWAVAATAACAHN	NDTGTTATTBTWW	SELEX Nitta et al.(2015) fd59A_2	0.716	0.651
fd59A M03741_2.00	Drosophila melanogaster	YWRWRTAAAYAHH	DDTRTTTAYWYWR	SELEX Nitta et al.(2015) fd59A_3	0.716	0.651
fd59A M03742_2.00	Drosophila melanogaster	MWACAAYAAYAHW	WDTRTTRTTGTWK	SELEX Nitta et al.(2015) fd59A_4	0.716	0.651
FOXF2 M02680_2.00	Homo sapiens	BNHNSRTAAACAHN	NDTGTTTAYSNDNV	SELEX Mathelier et al.(2014) MA0030.1	0.709	0.581
FOXF2 M10548_2.00	Homo sapiens	BNHNBRTAAACAHNVN	NBNDTGTTTAYVNDNV	Transfac Matys et al.(2006) V$FREAC2_01	0.709	0.581
FOXD4L4 M10564_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FOXD4L4_01	0.707	0.628
FOXD2 M03042_2.00	Homo sapiens	NRTMAAYRTTWDYN	NRHWAAYRTTKAYN	SELEX Jolma et al.(2013) FOXD2_1	0.705	0.628
FOXD2 M03043_2.00	Homo sapiens	RTAAAYA	TRTTTAY	SELEX Jolma et al.(2013) FOXD2_2	0.705	0.628
FOXD2 M04851_2.00	Homo sapiens	HWASAATAAYAWWN	NWWTRTTATTSTWD	SELEX Yin et al.(2017) FOXD2_eDBD_HT-SELEX_1	0.705	0.628
FOXD2 M04852_2.00	Homo sapiens	VYWANRTAAAYAH	DTRTTTAYNTWRB	SELEX Yin et al.(2017) FOXD2_eDBD_HT-SELEX_2	0.705	0.628
FOXD1 M02681_2.00	Homo sapiens	GTAAACAD	HTGTTTAC	SELEX Mathelier et al.(2014) MA0031.1	0.705	0.628
Foxd1 M10570_2.00	Mus musculus	SYWAWGTAAACADHVN	NBDHTGTTTACWTWRS	Transfac Matys et al.(2006) V$FREAC4_01	0.705	0.628
FOXD1 M10567_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FREAC4_02	0.705	0.628
FOXD2 M04853_2.00	Homo sapiens	HWACAATAACRWWN	NWWYGTTATTGTWD	SELEX Yin et al.(2017) FOXD2_eDBD_Methyl-HT-SELEX_1	0.705	0.628
FOXD2 M04854_2.00	Homo sapiens	RYTRNGTMAACRD	HYGTTKACNYARY	SELEX Yin et al.(2017) FOXD2_eDBD_Methyl-HT-SELEX_2	0.705	0.628
let-381 M00664_2.00	Caenorhabditis elegans	RTAAACAW	WTGTTTAY	PBM Narasimhan et al.(2015) pTH9057	0.704	0.581
FOXF1 M10529_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$FKHL5_Q3	0.701	0.581
FOXF1 M10530_2.00	Homo sapiens	YRHATAAACAHNB	VNDTGTTTATDYR	Transfac Matys et al.(2006) V$HFH8_01	0.701	0.581
croc M03744_2.00	Drosophila melanogaster	WRYGTMAACAH	DTGTTKACRYW	SELEX Nitta et al.(2015) croc_1	0.690	0.721
croc M10571_2.00	Drosophila melanogaster	HWNARTAAATAKNNNV	BNNNMTATTTAYYNWD	Transfac Matys et al.(2006) I$CROC_01	0.690	0.721
FOXG1 M01978_2.00	Homo sapiens	RTAAACAH	DTGTTTAY	PBM Weirauch et al.(2014) pTH5501	0.671	0.674
Foxg1 M00791_2.00	Mus musculus	NNNNMHAYAN	NTRTDKNNNN	PBM Weirauch et al.(2013) pTH2846	0.671	0.674
FOXG1 M03032_2.00	Homo sapiens	RTAAACAATDGTAAACA	TGTTTACHATTGTTTAY	SELEX Jolma et al.(2013) FOXG1_1	0.671	0.674
FOXG1 M03033_2.00	Homo sapiens	RCGGACACAATR	YATTGTGTCCGY	SELEX Jolma et al.(2013) FOXG1_2	0.671	0.674
Foxg1 M03052_2.00	Mus musculus	ATAAACAAVTGTMAACA	TGTTKACABTTGTTTAT	SELEX Jolma et al.(2013) Foxg1_1	0.671	0.674
Foxg1 M03053_2.00	Mus musculus	MHGGACACAATC	GATTGTGTCCDK	SELEX Jolma et al.(2013) Foxg1_2	0.671	0.674
Foxg1 M03054_2.00	Mus musculus	GTAAACA	TGTTTAC	SELEX Jolma et al.(2013) Foxg1_3	0.671	0.674
FOXG1 M04839_2.00	Homo sapiens	NACRYMMACAH	DTGTKKRYGTN	SELEX Yin et al.(2017) FOXG1_eDBD_HT-SELEX	0.671	0.674
FOXG1 M04840_2.00	Homo sapiens	HRCGYMAACAH	DTGTTKRCGYD	SELEX Yin et al.(2017) FOXG1_eDBD_Methyl-HT-SELEX	0.671	0.674
FOXA3 M04831_2.00	Homo sapiens	BVYTAWGTAAACAAAN	NTTTGTTTACWTARBV	SELEX Yin et al.(2017) FOXA3_FL_HT-SELEX_1	0.665	0.628
FOXA3 M04832_2.00	Homo sapiens	HWRWGYAAATATTKACWYWD	HWRWGTMAATATTTRCWYWD	SELEX Yin et al.(2017) FOXA3_FL_HT-SELEX_2	0.665	0.628
FOXA3 M09096_2.00	Homo sapiens	HWRWGTMAAYADN	NHTRTTKACWYWD	Misc Kulakovskiy et al.(2013) FOXA3_HUMAN.H11MO.0.B	0.665	0.628
Foxa3 M09106_2.00	Mus musculus	HWRWGTMAAYADN	NHTRTTKACWYWD	Misc Kulakovskiy et al.(2013) FOXA3_MOUSE.H11MO.0.A	0.665	0.628
FOXA3 M10557_2.00	Homo sapiens	Transfac license required	Transfac license required	Transfac Matys et al.(2006) V$HNF3G_Q4	0.665	0.628
FOXA3 M04833_2.00	Homo sapiens	CVYTAWGTAAACAAWB	VWTTGTTTACWTARBG	SELEX Yin et al.(2017) FOXA3_FL_Methyl-HT-SELEX_1	0.665	0.628
FOXA3 M04834_2.00	Homo sapiens	HWRWGYAAATATTKACWYWD	HWRWGTMAATATTTRCWYWD	SELEX Yin et al.(2017) FOXA3_FL_Methyl-HT-SELEX_2	0.665	0.628
bin M03752_2.00	Drosophila melanogaster	HTAATGTAAACAAW	WTTGTTTACATTAD	SELEX Nitta et al.(2015) bin_1	0.664	0.500
bin M06199_2.00	Drosophila melanogaster	TAAACARVGA	TCBYTGTTTA	B1H Zhu et al.(2011) bin_FlyReg_FBgn0045759	0.664	0.500
bin M06200_2.00	Drosophila melanogaster	RTAAACA	TGTTTAY	B1H Zhu et al.(2011) bin_SANGER_5_FBgn0045759	0.664	0.500
For this family, TFs with SR scores > 0.664* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
csin111139	Forkhead	208	297	KPPYSYIALIAMAIKYAPGRKITLNGIYRFIMENFPYYRDNRQGWQNSIRHNLSLNDCFVKLPRDKSRPGKGNYWTLSTNADEMFEHGNY

Links
Other Forkhead family TFs
Other *Clonorchis sinensis* TFs

1079 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
ovo	Drosophila melanogaster	FBgn0003028	D
lin-48	Caenorhabditis elegans	WBGene00003033	D
tetur157g00030	Tetranychus urticae	tetur157g00030	I
SMU15000684	Schmidtea mediterranea	SMU15000684	I
LDEC009536	Leptinotarsa decemlineata	LDEC009536	I
LCUP004963	Lucilia cuprina	LCUP004963	I
HHAL005991-PA	Halyomorpha halys	HHAL005991-PA	I
CLEC002514	Cimex lectularius	CLEC002514	I
Sakowv30033343m.g	Saccoglossus kowalevskii	Sakowv30033343m.g	I
Cflo_08035--XP_624482.2_APIME	Camponotus floridanus	Cflo_08035--XP_624482.2_APIME	I
AATE002741	Anopheles atroparvus	AATE002741	I
tetur12g02860	Tetranychus urticae	tetur12g02860	I
tetur12g02810	Tetranychus urticae	tetur12g02810	I
tetur12g02770	Tetranychus urticae	tetur12g02770	I
tetur12g02760	Tetranychus urticae	tetur12g02760	I
tetur12g02740	Tetranychus urticae	tetur12g02740	I
TC008099	Tribolium castaneum	TC008099	I
SPU_012448	Strongylocentrotus purpuratus	SPU_012448	I
SMAR006131	Strigamia maritima	SMAR006131	I
ASTEI07557	Anopheles stephensi	ASTEI07557	I
TELCIR_07985	Teladorsagia circumcincta	TELCIR_07985	I
SBAD_0001064501	Soboliphyme baturini	SBAD_0001064501	I
NECAME_03083	Necator americanus	NECAME_03083	I
L898_g2421	Steinernema monticolum	L898_g2421	I
HCOI01936300	Haemonchus contortus	HCOI01936300	I
BTMF_0001741201	Brugia timori	BTMF_0001741201	I
PPAI008669	Phlebotomus papatasi	PPAI008669	I
MDOA012259	Musca domestica	MDOA012259	I
SINV17081	Solenopsis invicta	SINV17081	I
ASIS014406	Anopheles sinensis	ASIS014406	I
AMEM014020	Anopheles merus	AMEM014020	I
AMEC022552	Anopheles melas	AMEC022552	I
AFUN010393	Anopheles funestus	AFUN010393	I
ADIR001008	Anopheles dirus	ADIR001008	I
ACUA027175	Anopheles culicifacies	ACUA027175	I
ACHR004136	Anopheles christyi	ACHR004136	I
CapteG147941	Capitella teleta	CapteG147941	I
GF20355	Drosophila ananassae	FBgn0097362	I
ovo	Drosophila virilis	FBgn0064309	I
CRE25436	Caenorhabditis remanei	CRE25436	I
CPIJ018505	Culex quinquefasciatus	CPIJ018505	I
CJA37604	Caenorhabditis japonica	CJA37604	I
CJA03277	Caenorhabditis japonica	CJA03277	I
CBN00506	Caenorhabditis brenneri	CBN00506	I
CBG09216	Caenorhabditis briggsae	CBG09216	I
GG18741	Drosophila erecta	FBgn0110950	I
Bm3814	Brugia malayi	Bm3814	I
BGIBMGA000988	Bombyx mori	BGIBMGA000988	I
AGAP000114	Anopheles gambiae	AGAP000114	I
ADAC004491	Anopheles darlingi	ADAC004491	I
ACYPI003064	Acyrthosiphon pisum	ACYPI003064	I
ACEP17857	Atta cephalotes	ACEP17857	I
AAEL017521	Aedes aegypti	AAEL017521	I
GA22634	Drosophila pseudoobscura	FBgn0244037	I
RPRC002781	Rhodnius prolixus	RPRC002781	I
PHUM086430	Pediculus humanus	PHUM086430	I
MCINX009401	Melitaea cinxia	MCINX009401	I
L798_11303	Zootermopsis nevadensis	L798_11303	I
KGM_02259	Danaus plexippus	KGM_02259	I
ISCW013547	Ixodes scapularis	ISCW013547	I
HMEL006827	Heliconius melpomene	HMEL006827	I
GB51354	Apis mellifera	GB51354	I
CpipJ_CPIJ018505	Culex pipiens	CpipJ_CPIJ018505	I
GE16381	Drosophila yakuba	FBgn0233910	I
GK10250	Drosophila willistoni	FBgn0212265	I
GD24377	Drosophila simulans	FBgn0195718	I
GM12381	Drosophila sechellia	FBgn0167318	I
GL26817	Drosophila persimilis	FBgn0164398	I
GI21666	Drosophila mojavensis	FBgn0144396	I
GH24684	Drosophila grimshawi	FBgn0132140	I

csin111139 (Clonorchis sinensis) Forkhead

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1079 Related TFs

csin111139 **(Clonorchis sinensis)
Forkhead**