CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Sakowv30033343m.g
(
Saccoglossus kowalevskii
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Sakowv30033343m.g
T142424_2.00
JGI:Metazome (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ovo
M03669_2.00
Drosophila melanogaster
DNMCCGTTA
TAACGGKNH
SELEX
Nitta et al.(2015)
ovo_1
0.770
0.797
ovo
M06064_2.00
Drosophila melanogaster
CHGTTAHW
WDTAACDG
B1H
Zhu et al.(2011)
ovo_FlyReg_FBgn0003028
0.770
0.797
ovo
M06065_2.00
Drosophila melanogaster
RGTHCCGTTAT
ATAACGGDACY
B1H
Zhu et al.(2011)
ovo_SANGER_5_FBgn0003028
0.770
0.797
ovo
M06066_2.00
Drosophila melanogaster
DDTMCCGTTABNYN
NRNVTAACGGKAHH
B1H
Zhu et al.(2011)
ovo_SOLEXA_5_FBgn0003028
0.770
0.797
ovo
M02671_2.00
Drosophila melanogaster
DCNGTTWSD
HSWAACNGH
SELEX
Mathelier et al.(2014)
MA0126.1
0.770
0.797
ovo
M09662_2.00
Drosophila melanogaster
DCNGTTAMWNNDV
BHNNWKTAACNGH
Misc
Kulakovskiy et al.(2009)
ovo
0.770
0.797
ovo
M10373_2.00
Drosophila melanogaster
NNNDCNGTTWSDDNN
NNHHSWAACNGHNNN
Transfac
Matys et al.(2006)
I$OVO_01
0.770
0.797
ovo
M10374_2.00
Drosophila melanogaster
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
I$OVO_Q6
0.770
0.797
lin-48
M00614_2.00
Caenorhabditis elegans
HCCGTTAB
VTAACGGD
PBM
Narasimhan et al.(2015)
pTH9155
0.770
0.783
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
23915419_peptide
C2H2 ZF
366
388
FMCEVCNKVFPLQRLLNRHMKCH
23915419_peptide
C2H2 ZF
394
416
YHCAYCGKGFNDTFDLKRHVRTH
23915419_peptide
C2H2 ZF
422
445
YKCEHCGKSFTQRCSLESHLSKVH
23915420_peptide
C2H2 ZF
351
373
FMCEVCNKVFPLQRLLNRHMKCH
23915420_peptide
C2H2 ZF
379
401
YHCAYCGKGFNDTFDLKRHVRTH
23915420_peptide
C2H2 ZF
407
430
YKCEHCGKSFTQRCSLESHLSKVH
23915421_peptide
C2H2 ZF
351
373
FMCEVCNKVFPLQRLLNRHMKCH
23915421_peptide
C2H2 ZF
379
401
YHCAYCGKGFNDTFDLKRHVRTH
23915421_peptide
C2H2 ZF
407
430
YKCEHCGKSFTQRCSLESHLSKVH
23915422_peptide
C2H2 ZF
283
305
FMCEVCNKVFPLQRLLNRHMKCH
23915422_peptide
C2H2 ZF
311
333
YHCAYCGKGFNDTFDLKRHVRTH
23915422_peptide
C2H2 ZF
339
362
YKCEHCGKSFTQRCSLESHLSKVH
Links
Other
C2H2 ZF
family TFs
Other
Saccoglossus kowalevskii
TFs
61 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
SPU_012448
Strongylocentrotus purpuratus
SPU_012448
I
0.787
CBN00506
Caenorhabditis brenneri
CBN00506
I
0.786
CapteG147941
Capitella teleta
CapteG147941
I
0.774
NECAME_03083
Necator americanus
NECAME_03083
I
0.774
ACEP17857
Atta cephalotes
ACEP17857
I
0.770
BGIBMGA000988
Bombyx mori
BGIBMGA000988
I
0.770
CBG09216
Caenorhabditis briggsae
CBG09216
I
0.770
CJA03277
Caenorhabditis japonica
CJA03277
I
0.770
CJA37604
Caenorhabditis japonica
CJA37604
I
0.770
CRE25436
Caenorhabditis remanei
CRE25436
I
0.770
ovo
Drosophila melanogaster
FBgn0003028
D
0.770
ovo
Drosophila virilis
FBgn0064309
I
0.770
GF20355
Drosophila ananassae
FBgn0097362
I
0.770
GG18741
Drosophila erecta
FBgn0110950
I
0.770
GH24684
Drosophila grimshawi
FBgn0132140
I
0.770
GI21666
Drosophila mojavensis
FBgn0144396
I
0.770
GL26817
Drosophila persimilis
FBgn0164398
I
0.770
GM12381
Drosophila sechellia
FBgn0167318
I
0.770
GD24377
Drosophila simulans
FBgn0195718
I
0.770
GK10250
Drosophila willistoni
FBgn0212265
I
0.770
GE16381
Drosophila yakuba
FBgn0233910
I
0.770
GA22634
Drosophila pseudoobscura
FBgn0244037
I
0.770
GB51354
Apis mellifera
GB51354
I
0.770
ISCW013547
Ixodes scapularis
ISCW013547
I
0.770
KGM_02259
Danaus plexippus
KGM_02259
I
0.770
MCINX009401
Melitaea cinxia
MCINX009401
I
0.770
PHUM086430
Pediculus humanus
PHUM086430
I
0.770
SINV17081
Solenopsis invicta
SINV17081
I
0.770
lin-48
Caenorhabditis elegans
WBGene00003033
D
0.770
Cflo_08035--XP_624482.2_APIME
Camponotus floridanus
Cflo_08035--XP_624482.2_APIME
I
0.770
HCOI01936300
Haemonchus contortus
HCOI01936300
I
0.770
L898_g2421
Steinernema monticolum
L898_g2421
I
0.770
TELCIR_07985
Teladorsagia circumcincta
TELCIR_07985
I
0.770
CpipJ_CPIJ018505
Culex pipiens
CpipJ_CPIJ018505
I
0.766
AAEL017521
Aedes aegypti
AAEL017521
I
0.766
ACYPI003064
Acyrthosiphon pisum
ACYPI003064
I
0.766
ADAC004491
Anopheles darlingi
ADAC004491
I
0.766
AGAP000114
Anopheles gambiae
AGAP000114
I
0.766
Bm3814
Brugia malayi
Bm3814
I
0.766
CPIJ018505
Culex quinquefasciatus
CPIJ018505
I
0.766
HMEL006827
Heliconius melpomene
HMEL006827
I
0.766
L798_11303
Zootermopsis nevadensis
L798_11303
I
0.766
RPRC002781
Rhodnius prolixus
RPRC002781
I
0.766
TC008099
Tribolium castaneum
TC008099
I
0.766
CLEC002514
Cimex lectularius
CLEC002514
I
0.766
HHAL005991-PA
Halyomorpha halys
HHAL005991-PA
I
0.766
LCUP004963
Lucilia cuprina
LCUP004963
I
0.766
LDEC009536
Leptinotarsa decemlineata
LDEC009536
I
0.766
AARA001055
Anopheles arabiensis
AARA001055
I
0.766
AATE002741
Anopheles atroparvus
AATE002741
I
0.766
ACHR004136
Anopheles christyi
ACHR004136
I
0.766
ACUA027175
Anopheles culicifacies
ACUA027175
I
0.766
ADIR001008
Anopheles dirus
ADIR001008
I
0.766
AFUN010393
Anopheles funestus
AFUN010393
I
0.766
AMEC022552
Anopheles melas
AMEC022552
I
0.766
AMEM014020
Anopheles merus
AMEM014020
I
0.766
ASIS014406
Anopheles sinensis
ASIS014406
I
0.766
ASTEI07557
Anopheles stephensi
ASTEI07557
I
0.766
PPAI008669
Phlebotomus papatasi
PPAI008669
I
0.766
BTMF_0001741201
Brugia timori
BTMF_0001741201
I
0.766