Bostr.30275s0055 (Boechera stricta)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 Bostr.30275s0055 T196404_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA16
M06897_2.00 		Arabidopsis thaliana
ATGATGATGATSATGATGATGATSATG
CATSATCATCATCATSATCATCATCAT		 Dap-seq
OMalley et al.(2016)
GATA16_col_a 		0.828 0.806
GATA15
M01997_2.00 		Arabidopsis thaliana
NNHGATCNN
NNGATCDNN		 PBM
Weirauch et al.(2014)
pTH7662 		0.808 0.806
GATA15
M06886_2.00 		Arabidopsis thaliana
GATGATGATGATGATGATS
SATCATCATCATCATCATC		 Dap-seq
OMalley et al.(2016)
GATA15_col_b 		0.808 0.806
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bostr.30275s0055.1.p GATA 38 73

Links

Other GATA family TFs
Other Boechera stricta TFs

112 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
DREB2F Arabidopsis thaliana AT3G57600 D 0.000
PK08602.1 Cannabis sativa PK08602.1 D 0.000
cassava39243.m1 Manihot esculenta cassava39243.m1 I 0.000
Carubv10017800m.g Capsella rubella Carubv10017800m.g I 0.000
Cagra.0578s0089 Capsella grandiflora Cagra.0578s0089 I 0.000
Bostr.20903s0012 Boechera stricta Bostr.20903s0012 I 0.000
Aquca_009_00282 Aquilegia coerulea Aquca_009_00282 I 0.000
Aquca_004_00452 Aquilegia coerulea Aquca_004_00452 I 0.000
e_gw1.292.36.1 Physcomitrella patens e_gw1.292.36.1 I 0.000
e_gw1.162.74.1 Physcomitrella patens e_gw1.162.74.1 I 0.000
Cucsa.336890 Cucumis sativus Cucsa.336890 I 0.000
Ciclev10005549m.g Citrus clementina Ciclev10005549m.g I 0.000
cassava15495.m1 Manihot esculenta cassava15495.m1 I 0.000
27810.m000639 Ricinus communis 27810.m000639 I 0.000
Pm025865 Prunus mume Pm025865 I 0.000
Cla017778 Citrullus lanatus Cla017778 I 0.000
Ca_07264 Cicer arietinum Ca_07264 I 0.000
VIT_08s0007g08150 Vitis vinifera VIT_08s0007g08150 I 0.000
Traes_4AS_0D75149B5 Triticum aestivum Traes_4AS_0D75149B5 I 0.000
MDP0000871361 Malus domestica MDP0000871361 I 0.000
AMTR_s00022p00250320 Amborella trichopoda AMTR_s00022p00250320 I 0.000
Thhalv10006489m.g Eutrema salsugineum Thhalv10006489m.g I 0.000
SapurV1A.0133s0330 Salix purpurea SapurV1A.0133s0330 I 0.000
SapurV1A.0018s0040 Salix purpurea SapurV1A.0018s0040 I 0.000
Pavir.Ib00517 Panicum virgatum Pavir.Ib00517 I 0.000
Pavir.Ia04341 Panicum virgatum Pavir.Ia04341 I 0.000
orange1.1g042353m.g Citrus sinensis orange1.1g042353m.g I 0.000
MDP0000880312 Malus domestica MDP0000880312 I 0.000
TCM_024756 Theobroma cacao TCM_024756 I 0.000
MDP0000703626 Malus domestica MDP0000703626 I 0.000
Lus10012210.g Linum usitatissimum Lus10012210.g I 0.000
Lus10011319.g Linum usitatissimum Lus10011319.g I 0.000
Gorai.007G359400 Gossypium raimondii Gorai.007G359400 I 0.000
gene26463-v1.0-hybrid Fragaria vesca gene26463-v1.0-hybrid I 0.000
evm.TU.supercontig_92.16 Carica papaya evm.TU.supercontig_92.16 I 0.000
Eucgr.A02390 Eucalyptus grandis Eucgr.A02390 I 0.000
GLYMA02G31350 Glycine max GLYMA02G31350 I 0.000
GRMZM2G419901 Zea mays GRMZM2G419901 I 0.000
GRMZM2G399098 Zea mays GRMZM2G399098 I 0.000
GRMZM2G376255 Zea mays GRMZM2G376255 I 0.000
GLYMA19G32380 Glycine max GLYMA19G32380 I 0.000
GLYMA19G04461 Glycine max GLYMA19G04461 I 0.000
GLYMA14G32210 Glycine max GLYMA14G32210 I 0.000
GLYMA10G21850 Glycine max GLYMA10G21850 I 0.000
GLYMA03G29530 Glycine max GLYMA03G29530 I 0.000
LPERR03G04860 Leersia perrieri LPERR03G04860 I 0.000
fgenesh2_kg.5__2201__AT3G57600.1 Arabidopsis lyrata fgenesh2_kg.5__2201__AT3G57600.1 I 0.000
BRADI1G72990 Brachypodium distachyon BRADI1G72990 I 0.000
Bra014617 Brassica rapa Bra014617 I 0.000
Bra007341 Brassica rapa Bra007341 I 0.000
Bo8g092010 Brassica oleracea Bo8g092010 I 0.000
Bo6g073020 Brassica oleracea Bo6g073020 I 0.000
Bo4g111040 Brassica oleracea Bo4g111040 I 0.000
BGIOSGA011963 Oryza indica BGIOSGA011963 I 0.000
MTR_7g092190 Medicago truncatula MTR_7g092190 I 0.000
OBART03G05550 Oryza barthii OBART03G05550 I 0.000
OGLUM03G05490 Oryza glumaepatula OGLUM03G05490 I 0.000
OMERI03G05220 Oryza meridionalis OMERI03G05220 I 0.000
ONIVA03G05350 Oryza nivara ONIVA03G05350 I 0.000
OPUNC03G05230 Oryza punctata OPUNC03G05230 I 0.000
ORUFI03G05330 Oryza rufipogon ORUFI03G05330 I 0.000
DREB2E Oryza sativa OS03G0174400 I 0.000
PGSC0003DMG400023717 Solanum tuberosum PGSC0003DMG400023717 I 0.000
POPTR_0006s05320 Populus trichocarpa POPTR_0006s05320 I 0.000
POPTR_0016s05360 Populus trichocarpa POPTR_0016s05360 I 0.000
PRUPE_ppa009616mg Prunus persica PRUPE_ppa009616mg I 0.000
SELMODRAFT_105485 Selaginella moellendorffii SELMODRAFT_105485 I 0.000
SELMODRAFT_38502 Selaginella moellendorffii SELMODRAFT_38502 I 0.000
Solyc10g080310.1 Solanum lycopersicum Solyc10g080310.1 I 0.000