six4a (Takifugu rubripes)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSTRUG00000010704 T216727_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Six4
M00461_2.00 		Mus musculus
NNKABMHNN
NNDKVTMNN		 PBM
Berger et al.(2008)
Six4_2860 		0.866 0.906
SIX4
M04939_2.00 		Homo sapiens
NVYGATACVB
VBGTATCRBN		 SELEX
Yin et al.(2017)
SIX4_eDBD_HT-SELEX 		0.866 0.906
Six4
M09198_2.00 		Mus musculus
DGDAABHNSASNNN
NNNSTSNDVTTHCH		 Misc
Kulakovskiy et al.(2013)
SIX4_MOUSE.H11MO.0.C 		0.866 0.906
SIX4
M10646_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX4_Q3 		0.866 0.906
SIX4
M04940_2.00 		Homo sapiens
NBGTAWCRHN
NDYGWTACVN		 SELEX
Yin et al.(2017)
SIX4_eDBD_Methyl-HT-SELEX 		0.866 0.906
Six4
M00563_2.00 		Drosophila melanogaster
NNDANMHNN
NNDKNTHNN		 PBM
Busser et al.(2012a)
Six4 		0.827 0.792
Six4
M06530_2.00 		Drosophila melanogaster
TGABAC
GTVTCA		 B1H
Mathelier et al.(2014)
MA0204.1 		0.827 0.792
Six4
M06334_2.00 		Drosophila melanogaster
WDDTGABAC
GTVTCAHHW		 B1H
Zhu et al.(2011)
Six4_Cell_FBgn0027364 		0.827 0.792
Six4
M06335_2.00 		Drosophila melanogaster
NTGAKACB
VGTMTCAN		 B1H
Zhu et al.(2011)
Six4_SOLEXA_2_FBgn0027364 		0.827 0.792
Six4
M06336_2.00 		Drosophila melanogaster
NNNTGABA
TVTCANNN		 B1H
Zhu et al.(2011)
Six4_SOLEXA_FBgn0027364 		0.827 0.792
SIX5
M08208_2.00 		Homo sapiens
GARWTGTAGT
ACTACAWYTC		 ChIP-seq
Contrino et al.(2012)
Mv121 		0.826 0.792
SIX5
M08209_2.00 		Homo sapiens
GGAGTTGT
ACAACTCC		 ChIP-seq
Contrino et al.(2012)
Mv123 		0.826 0.792
SIX5
M10738_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX5_01 		0.826 0.792
SIX5
M10739_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX5_02 		0.826 0.792
so
M02117_2.00 		Drosophila melanogaster
NDATMYNNN
NNNRKATHN		 PBM
Weirauch et al.(2014)
pTH5690 		0.708 0.717
so
M03800_2.00 		Drosophila melanogaster
NYGATAYB
VRTATCRN		 SELEX
Nitta et al.(2015)
so_1 		0.708 0.717
so
M03801_2.00 		Drosophila melanogaster
YKATAYNNNYGATAY
RTATCRNNNRTATMR		 SELEX
Nitta et al.(2015)
so_2 		0.708 0.717
so
M03802_2.00 		Drosophila melanogaster
YGATACGTATCR
YGATACGTATCR		 SELEX
Nitta et al.(2015)
so_3 		0.708 0.717
so
M03803_2.00 		Drosophila melanogaster
RTATCRYGATAC
GTATCRYGATAY		 SELEX
Nitta et al.(2015)
so_4 		0.708 0.717
so
M06497_2.00 		Drosophila melanogaster
TGATAC
GTATCA		 B1H
Mathelier et al.(2014)
MA0246.1 		0.708 0.717
so
M06268_2.00 		Drosophila melanogaster
NRTGATA
TATCAYN		 B1H
Zhu et al.(2011)
So_Cell_FBgn0003460 		0.708 0.717
so
M06269_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
So_SOLEXA_FBgn0003460 		0.708 0.717
Six2
M00425_2.00 		Mus musculus
NNAYMYNN
NNRKRTNN		 PBM
Berger et al.(2008)
Six2_2307 		0.708 0.698
Six1
M00512_2.00 		Mus musculus
NNDATMYNNN
NNNRKATHNN		 PBM
Berger et al.(2008)
Six1_0935 		0.708 0.698
SIX1
M05094_2.00 		Homo sapiens
NNYGATACVB
VBGTATCRNN		 SELEX
Yin et al.(2017)
SIX1_eDBD_HT-SELEX 		0.708 0.698
SIX1
M05096_2.00 		Homo sapiens
NNYGATAYVB
VBRTATCRNN		 SELEX
Yin et al.(2017)
SIX1_FL_HT-SELEX 		0.708 0.698
SIX2
M05285_2.00 		Homo sapiens
NNYGATACSB
VSGTATCRNN		 SELEX
Yin et al.(2017)
SIX2_eDBD_HT-SELEX 		0.708 0.698
SIX2
M05287_2.00 		Homo sapiens
NSGTRWCRYN
NRYGWYACSN		 SELEX
Yin et al.(2017)
SIX2_FL_HT-SELEX 		0.708 0.698
SIX1
M08130_2.00 		Homo sapiens
GWAACCTGANM
KNTCAGGTTWC		 ChIP-seq
Mathelier et al.(2014)
MA1118.1 		0.708 0.698
SIX2
M08133_2.00 		Homo sapiens
NNNTGWAACCTGAKMH
DKMTCAGGTTWCANNN		 ChIP-seq
Mathelier et al.(2014)
MA1119.1 		0.708 0.698
SIX1
M09142_2.00 		Homo sapiens
DGWAAYHTGABMYN
NRKVTCADRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX1_HUMAN.H11MO.0.A 		0.708 0.698
SIX2
M09157_2.00 		Homo sapiens
DGWAAYHHGABMH
DKVTCDDRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX2_HUMAN.H11MO.0.A 		0.708 0.698
Six2
M09185_2.00 		Mus musculus
DGWAAYHYRABMYB
VRKVTYRDRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX2_MOUSE.H11MO.0.A 		0.708 0.698
Six1
M09579_2.00 		Mus musculus
GWAAYHTGABMH
DKVTCADRTTWC		 Misc
Heinz et al.(2010)
Myoblast-Six1_GSE20150 		0.708 0.698
SIX1
M10684_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX1_Q3_01 		0.708 0.698
SIX1
M10685_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX1_Q3 		0.708 0.698
SIX1
M05095_2.00 		Homo sapiens
NNYGATABNB
VNVTATCRNN		 SELEX
Yin et al.(2017)
SIX1_eDBD_Methyl-HT-SELEX 		0.708 0.698
SIX1
M05097_2.00 		Homo sapiens
NNYGATAYSB
VSRTATCRNN		 SELEX
Yin et al.(2017)
SIX1_FL_Methyl-HT-SELEX 		0.708 0.698
SIX2
M05286_2.00 		Homo sapiens
NBRTATCRNN
NNYGATAYVN		 SELEX
Yin et al.(2017)
SIX2_eDBD_Methyl-HT-SELEX 		0.708 0.698
SIX2
M05288_2.00 		Homo sapiens
VBRTAWCRNN
NNYGWTAYVB		 SELEX
Yin et al.(2017)
SIX2_FL_Methyl-HT-SELEX 		0.708 0.698
ceh-34
M00672_2.00 		Caenorhabditis elegans
NNNRDAWNNN
NNNWTHYNNN		 PBM
Narasimhan et al.(2015)
pTH9708 		0.633 0.585
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000027003 Homeodomain 193 245
ENSTRUP00000027004 Homeodomain 185 237

Links

Other Homeodomain family TFs
Other Takifugu rubripes TFs

543 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ciclev10011376m.g Citrus clementina Ciclev10011376m.g N
Cla018594 Citrullus lanatus Cla018594 N
30078.m002307 Ricinus communis 30078.m002307 N
cassava35219.m1 Manihot esculenta cassava35219.m1 N
Cucsa.124610 Cucumis sativus Cucsa.124610 N
mgf007606m Mimulus guttatus mgf007606m N
Aquca_030_00101 Aquilegia coerulea Aquca_030_00101 N
Aquca_053_00136 Aquilegia coerulea Aquca_053_00136 N
Bostr.23794s0392 Boechera stricta Bostr.23794s0392 N
Cagra.0558s0014 Capsella grandiflora Cagra.0558s0014 N
Carubv10022939m.g Capsella rubella Carubv10022939m.g N
Ca_17153 Cicer arietinum Ca_17153 N
Eucgr.K01255 Eucalyptus grandis Eucgr.K01255 N
evm.TU.supercontig_56.16 Carica papaya evm.TU.supercontig_56.16 N
gene09615-v1.0-hybrid Fragaria vesca gene09615-v1.0-hybrid N
Gorai.006G165200 Gossypium raimondii Gorai.006G165200 N
Gorai.009G415400 Gossypium raimondii Gorai.009G415400 N
orange1.1g008352m.g Citrus sinensis orange1.1g008352m.g N
SapurV1A.0141s0230 Salix purpurea SapurV1A.0141s0230 N
Thhalv10016472m.g Eutrema salsugineum Thhalv10016472m.g N
chr1.CM0033.1120.nc Lotus japonicus chr1.CM0033.1120.nc N
PDK_20s1626471g002 Phoenix dactylifera PDK_20s1626471g002 N
GSMUA_Achr4G30300_001 Musa acuminata GSMUA_Achr4G30300_001 N
SIGF Arabidopsis thaliana AT2G36990 N
Bo4g186560 Brassica oleracea Bo4g186560 N
Bra017213 Brassica rapa Bra017213 N
SIGF Arabidopsis lyrata fgenesh2_kg.4__1742__AT2G36990.1 N
GLYMA03G33970 Glycine max GLYMA03G33970 N
GLYMA05G22730 Glycine max GLYMA05G22730 N
GLYMA10G06500 Glycine max GLYMA10G06500 N
GLYMA13G20700 Glycine max GLYMA13G20700 N
GLYMA19G36710 Glycine max GLYMA19G36710 N
GSMUA_Achr11G17050_001 Musa acuminata GSMUA_Achr11G17050_001 N
AMTR_s00009p00072720 Amborella trichopoda AMTR_s00009p00072720 N
MTR_1g063850 Medicago truncatula MTR_1g063850 N
MTR_7g101840 Medicago truncatula MTR_7g101840 N
PGSC0003DMG400021553 Solanum tuberosum PGSC0003DMG400021553 N
POPTR_0006s12760 Populus trichocarpa POPTR_0006s12760 N
PRUPE_ppa003513mg Prunus persica PRUPE_ppa003513mg N
Solyc09g008040.2 Solanum lycopersicum Solyc09g008040.2 N
TCM_022198 Theobroma cacao TCM_022198 N
SIGF Vitis vinifera VIT_08s0040g01560 N
Ca_12052 Cicer arietinum Ca_12052 N