ENSXMAG00000019109 (Xiphophorus maculatus)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSXMAG00000019109 T217287_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Nkx2-1
M00385_2.00 		Mus musculus
NNRAGDRN
NYHCTYNN		 PBM
Berger et al.(2008)
Titf1_1722 		0.867 1.000
Nkx2-4
M00514_2.00 		Mus musculus
NNRAGDRBNN
NNVYHCTYNN		 PBM
Berger et al.(2008)
Nkx2-4_3074 		0.867 1.000
NKX2-1
M09146_2.00 		Homo sapiens
BTKGAGWGBN
NVCWCTCMAV		 Misc
Kulakovskiy et al.(2013)
NKX21_HUMAN.H11MO.0.A 		0.867 1.000
Nkx2-1
M09171_2.00 		Mus musculus
NBTKGAGWGB
VCWCTCMAVN		 Misc
Kulakovskiy et al.(2013)
NKX21_MOUSE.H11MO.0.A 		0.867 1.000
Nkx2-1
M09563_2.00 		Mus musculus
BTBRAGWGBH
DVCWCTYVAV		 Misc
Heinz et al.(2010)
LungAC-Nkx2.1_GSE43252 		0.867 1.000
NKX2-1
M10694_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TITF1_Q3 		0.867 1.000
NKX2-1
M10695_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TTF1_Q5_01 		0.867 1.000
NKX2-1
M10696_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TTF1_Q5 		0.867 1.000
NKX2-1
M10697_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TTF1_Q6 		0.867 1.000
ceh-24
M02181_2.00 		Caenorhabditis elegans
NNRAKWRNN
NNYWMTYNN		 PBM
Weirauch et al.(2014)
pTH6327 		0.837 0.877
scro
M03854_2.00 		Drosophila melanogaster
NNBRMGTGB
VCACKYVNN		 SELEX
Nitta et al.(2015)
scro_1 		0.834 0.930
Nkx2-2
M00438_2.00 		Mus musculus
NNNRAGDRN
NYHCTYNNN		 PBM
Berger et al.(2008)
Nkx2-2_2823 		0.798 0.895
Nkx2-2
M09190_2.00 		Mus musculus
NTBRAGWGBBN
NVVCWCTYVAN		 Misc
Kulakovskiy et al.(2013)
NKX22_MOUSE.H11MO.0.A 		0.798 0.895
NKX2-2
M10681_2.00 		Homo sapiens
WTAAGTRBTT
AAVYACTTAW		 Transfac
Matys et al.(2006)
V$NKX22_01 		0.798 0.895
NKX2-2
M10682_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NKX2B_Q3_01 		0.798 0.895
NKX2-2
M10683_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NKX2B_Q3 		0.798 0.895
NKX2-5
M00323_2.00 		Homo sapiens
NWYAAGTGSNN
NNSCACTTRWN		 PBM
Barrera et al.(2016)
NKX2-5_REF 		0.787 0.825
Nkx2-5
M00404_2.00 		Mus musculus
NNNRAGDRBN
NVYHCTYNNN		 PBM
Berger et al.(2008)
Nkx2-5_3436 		0.787 0.825
NKX2-5
M05346_2.00 		Homo sapiens
BHYAAGTGBN
NVCACTTRDV		 SELEX
Yin et al.(2017)
NKX2-5_FL_HT-SELEX 		0.787 0.825
Nkx2-5
M02686_2.00 		Mus musculus
WTAAKWK
MWMTTAW		 SELEX
Mathelier et al.(2014)
MA0063.1 		0.787 0.825
Nkx2-5
M08136_2.00 		Mus musculus
SYTGAGWGSYH
DRSCWCTCARS		 ChIP-seq
Mathelier et al.(2014)
MA0503.1 		0.787 0.825
NKX2-5
M09163_2.00 		Homo sapiens
BKRAGWGV
BCWCTYMV		 Misc
Kulakovskiy et al.(2013)
NKX25_HUMAN.H11MO.0.B 		0.787 0.825
Nkx2-5
M09177_2.00 		Mus musculus
NBYBRAGTGS
SCACTYVRVN		 Misc
Kulakovskiy et al.(2013)
NKX25_MOUSE.H11MO.0.A 		0.787 0.825
Nkx2-5
M09567_2.00 		Mus musculus
HBRAGWGBNN
NNVCWCTYVD		 Misc
Heinz et al.(2010)
HL1-Nkx2.5.biotin_GSE21529 		0.787 0.825
NKX2-5
M10742_2.00 		Homo sapiens
TYAAGTG
CACTTRA		 Transfac
Matys et al.(2006)
V$NKX25_01 		0.787 0.825
NKX2-5
M10743_2.00 		Homo sapiens
CWTAATTV
BAATTAWG		 Transfac
Matys et al.(2006)
V$NKX25_02 		0.787 0.825
NKX2-5
M10744_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NKX25_Q5 		0.787 0.825
NKX2-5
M10745_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NKX25_Q6 		0.787 0.825
NKX2-5
M00321_2.00 		Homo sapiens
HNAAGTRBNN
NNVYACTTND		 PBM
Barrera et al.(2016)
NKX2-5_R161P 		0.787 0.825
NKX2-5
M05347_2.00 		Homo sapiens
BTYAAGTGGN
NCCACTTRAV		 SELEX
Yin et al.(2017)
NKX2-5_FL_Methyl-HT-SELEX_1 		0.787 0.825
NKX2-5
M05348_2.00 		Homo sapiens
BTYAACGAB
VTCGTTRAV		 SELEX
Yin et al.(2017)
NKX2-5_FL_Methyl-HT-SELEX_2 		0.787 0.825
NKX2-5
M00322_2.00 		Homo sapiens
NNNRNNN
NNNYNNN		 PBM
Barrera et al.(2016)
NKX2-5_R190C 		0.787 0.807
NKX2-5
M00324_2.00 		Homo sapiens
NHNNNNN
NNNNNDN		 PBM
Barrera et al.(2016)
NKX2-5_T178M 		0.787 0.807
Nkx2-3
M00497_2.00 		Mus musculus
NNRAGDRNN
NNYHCTYNN		 PBM
Berger et al.(2008)
Nkx2-3_3435 		0.785 0.842
NKX2-3
M05042_2.00 		Homo sapiens
NNBAAGTGBN
NVCACTTVNN		 SELEX
Yin et al.(2017)
NKX2-3_eDBD_HT-SELEX 		0.785 0.842
NKX2-3
M05045_2.00 		Homo sapiens
BNBAAGTGBN
NVCACTTVNV		 SELEX
Yin et al.(2017)
NKX2-3_FL_HT-SELEX 		0.785 0.842
NKX2-3
M05043_2.00 		Homo sapiens
BNBAAGTGBN
NVCACTTVNV		 SELEX
Yin et al.(2017)
NKX2-3_eDBD_Methyl-HT-SELEX_1 		0.785 0.842
NKX2-3
M05044_2.00 		Homo sapiens
SDYAACGHB
VDCGTTRHS		 SELEX
Yin et al.(2017)
NKX2-3_eDBD_Methyl-HT-SELEX_2 		0.785 0.842
NKX2-3
M05046_2.00 		Homo sapiens
BNBAAGTGBN
NVCACTTVNV		 SELEX
Yin et al.(2017)
NKX2-3_FL_Methyl-HT-SELEX_1 		0.785 0.842
NKX2-3
M05047_2.00 		Homo sapiens
SWYAACSHB
VDSGTTRWS		 SELEX
Yin et al.(2017)
NKX2-3_FL_Methyl-HT-SELEX_2 		0.785 0.842
vnd
M06551_2.00 		Drosophila melanogaster
WYTCAAGTR
YACTTGARW		 B1H
Mathelier et al.(2014)
MA0253.1 		0.782 0.860
vnd
M06377_2.00 		Drosophila melanogaster
WYTCAAGTR
YACTTGARW		 B1H
Zhu et al.(2011)
Vnd_Cell_FBgn0003986 		0.782 0.860
vnd
M06378_2.00 		Drosophila melanogaster
KYTSAAGWGY
RCWCTTSARM		 B1H
Zhu et al.(2011)
vnd_FlyReg_FBgn0003986 		0.782 0.860
vnd
M06379_2.00 		Drosophila melanogaster
BTBAAGTR
YACTTVAV		 B1H
Zhu et al.(2011)
Vnd_SOLEXA_FBgn0003986 		0.782 0.860
vnd
M09683_2.00 		Drosophila melanogaster
TCAAGTGB
VCACTTGA		 Misc
Kulakovskiy et al.(2009)
vnd 		0.782 0.860
ceh-28
M08210_2.00 		Caenorhabditis elegans
AATCGATW
WATCGATT		 ChIP-seq
Contrino et al.(2012)
Mw138 		0.781 0.684
Nkx2-9
M00520_2.00 		Mus musculus
NNNRAGDRBN
NVYHCTYNNN		 PBM
Berger et al.(2008)
Nkx2-9_3082 		0.775 0.807
Nkx2-9
M00800_2.00 		Mus musculus
NNRAGDRBNN
NNVYHCTYNN		 PBM
Weirauch et al.(2013)
pTH2842 		0.775 0.807
Nkx2-9
M09215_2.00 		Mus musculus
BTCAAGKRB
VYMCTTGAV		 Misc
Kulakovskiy et al.(2013)
NKX28_MOUSE.H11MO.0.C 		0.775 0.807
tin
M00559_2.00 		Drosophila melanogaster
NWYAAGTGGNN
NNCCACTTRWN		 PBM
Busser et al.(2012a)
Tin 		0.771 0.667
tin
M03809_2.00 		Drosophila melanogaster
BTYAAGTGSN
NSCACTTRAV		 SELEX
Nitta et al.(2015)
tin_1 		0.771 0.667
tin
M06284_2.00 		Drosophila melanogaster
BTYAAGTG
CACTTRAV		 B1H
Zhu et al.(2011)
Tin_Cell_FBgn0004110 		0.771 0.667
tin
M06285_2.00 		Drosophila melanogaster
BCTCAAGTGSVN
NBSCACTTGAGV		 B1H
Zhu et al.(2011)
tin_FlyReg_FBgn0004110 		0.771 0.667
tin
M06286_2.00 		Drosophila melanogaster
BWYAAGTR
YACTTRWV		 B1H
Zhu et al.(2011)
Tin_SOLEXA_FBgn0004110 		0.771 0.667
tin
M08421_2.00 		Drosophila melanogaster
DBTCRAGTGS
SCACTYGAVH		 ChIP-chip
Mathelier et al.(2014)
MA0247.2 		0.771 0.667
Nkx2-6
M00496_2.00 		Mus musculus
HYAAGTRBNN
NNVYACTTRD		 PBM
Berger et al.(2008)
Nkx2-6_3437 		0.763 0.789
ceh-22
M00376_2.00 		Caenorhabditis elegans
WBRAGTRBNN
NNVYACTYVW		 PBM
Berger et al.(2006)
Ceh-22 		0.761 0.807
NKX2-5
M00320_2.00 		Homo sapiens
NHBAAKWRN
NYWMTTVDN		 PBM
Barrera et al.(2016)
NKX2-5_K183E 		0.754 0.807
NKX2-8
M00302_2.00 		Homo sapiens
NNRAGDRB
VYHCTYNN		 PBM
Barrera et al.(2016)
NKX2-8_REF 		0.743 0.807
NKX2-8
M05149_2.00 		Homo sapiens
BTSRAGTGBN
NVCACTYSAV		 SELEX
Yin et al.(2017)
NKX2-8_FL_HT-SELEX 		0.743 0.807
NKX2-8
M09145_2.00 		Homo sapiens
BTCAAGKRB
VYMCTTGAV		 Misc
Kulakovskiy et al.(2013)
NKX28_HUMAN.H11MO.0.C 		0.743 0.807
NKX2-8
M05150_2.00 		Homo sapiens
GCARTAACGACATC
GATGTCGTTAYTGC		 SELEX
Yin et al.(2017)
NKX2-8_FL_Methyl-HT-SELEX_1 		0.743 0.807
NKX2-8
M05151_2.00 		Homo sapiens
BTSAAGTGBN
NVCACTTSAV		 SELEX
Yin et al.(2017)
NKX2-8_FL_Methyl-HT-SELEX_2 		0.743 0.807
NKX2-8
M05152_2.00 		Homo sapiens
BTBAACGAB
VTCGTTVAV		 SELEX
Yin et al.(2017)
NKX2-8_FL_Methyl-HT-SELEX_3 		0.743 0.807
NKX2-8
M00301_2.00 		Homo sapiens
NNRAKDRB
VYHMTYNN		 PBM
Barrera et al.(2016)
NKX2-8_A94T 		0.743 0.789
Q24782_9CNID
M02206_2.00 		Eleutheria dichotoma
TTAATTAA
TTAATTAA		 PBM
Weirauch et al.(2014)
pTH5486 		0.600 0.474
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSXMAP00000019145 Homeodomain 152 208

Links

Other Homeodomain family TFs
Other Xiphophorus maculatus TFs

832 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GATA24 Arabidopsis thaliana AT3G21175 D
GATA28 Arabidopsis thaliana AT1G51600 D
ZIM Arabidopsis thaliana AT4G24470 D
OS06G0698900 Oryza sativa OS06G0698900 D
BGIOSGA007539 Oryza indica BGIOSGA007539 I
BGIOSGA020596 Oryza indica BGIOSGA020596 I
Bo1g039000 Brassica oleracea Bo1g039000 I
Bo1g108240 Brassica oleracea Bo1g108240 I
Bo3g181450 Brassica oleracea Bo3g181450 I
Bo5g103560 Brassica oleracea Bo5g103560 I
Bra013805 Brassica rapa Bra013805 I
Bra014292 Brassica rapa Bra014292 I
Bra023900 Brassica rapa Bra023900 I
Bra031258 Brassica rapa Bra031258 I
BRADI1G33980 Brachypodium distachyon BRADI1G33980 I
BRADI3G03800 Brachypodium distachyon BRADI3G03800 I
F775_08559 Aegilops tauschii F775_08559 I
ZML1 Arabidopsis lyrata fgenesh2_kg.3__2338__AT3G21175.1 I
TIFY1 Arabidopsis lyrata fgenesh2_kg.7__1832__AT4G24470.2 I
GLYMA08G23720 Glycine max GLYMA08G23720 I
GRMZM2G058479 Zea mays GRMZM2G058479 I
GRMZM2G080509 Zea mays GRMZM2G080509 I
GSMUA_Achr10G06260_001 Musa acuminata GSMUA_Achr10G06260_001 I
GSMUA_Achr2G04520_001 Musa acuminata GSMUA_Achr2G04520_001 I
GSMUA_Achr3G05620_001 Musa acuminata GSMUA_Achr3G05620_001 I
GSMUA_Achr7G08720_001 Musa acuminata GSMUA_Achr7G08720_001 I
GSMUA_Achr9G13870_001 Musa acuminata GSMUA_Achr9G13870_001 I
LPERR02G03330 Leersia perrieri LPERR02G03330 I
LPERR06G21800 Leersia perrieri LPERR06G21800 I
LPERR11G14110 Leersia perrieri LPERR11G14110 I
MLOC_17061 Hordeum vulgare MLOC_17061 I
MLOC_3107 Hordeum vulgare MLOC_3107 I
MTR_3g100050 Medicago truncatula MTR_3g100050 I
MTR_4g008070 Medicago truncatula MTR_4g008070 I
OB02G13220 Oryza brachyantha OB02G13220 I
OB06G33840 Oryza brachyantha OB06G33840 I
OBART02G03780 Oryza barthii OBART02G03780 I
OBART06G26250 Oryza barthii OBART06G26250 I
OGLUM02G03560 Oryza glumaepatula OGLUM02G03560 I
OGLUM06G27650 Oryza glumaepatula OGLUM06G27650 I
OLONG_015069 Oryza longistaminata OLONG_015069 I
OMERI02G04610 Oryza meridionalis OMERI02G04610 I
OMERI06G26410 Oryza meridionalis OMERI06G26410 I
ONIVA02G03810 Oryza nivara ONIVA02G03810 I
ONIVA06G28780 Oryza nivara ONIVA06G28780 I
OPUNC02G02970 Oryza punctata OPUNC02G02970 I
OPUNC06G23830 Oryza punctata OPUNC06G23830 I
ORGLA02G0035000 Oryza glaberrima ORGLA02G0035000 I
ORGLA06G0219100 Oryza glaberrima ORGLA06G0219100 I
ORUFI02G03830 Oryza rufipogon ORUFI02G03830 I
ORUFI06G28170 Oryza rufipogon ORUFI06G28170 I
GATA17 Oryza sativa OS02G0148500 I
POPTR_0007s03130 Populus trichocarpa POPTR_0007s03130 I
POPTR_0010s25810 Populus trichocarpa POPTR_0010s25810 I
POPTR_0017s06980 Populus trichocarpa POPTR_0017s06980 I
PRUPE_ppa009401mg Prunus persica PRUPE_ppa009401mg I
PRUPE_ppa009709mg Prunus persica PRUPE_ppa009709mg I
Sb10g028750 Sorghum bicolor Sb10g028750 I
ZML2 Arabidopsis lyrata scaffold_104929.1 I
SELMODRAFT_177195 Selaginella moellendorffii SELMODRAFT_177195 I
SELMODRAFT_423855 Selaginella moellendorffii SELMODRAFT_423855 I
Si006750m.g Setaria italica Si006750m.g I
TCM_007360 Theobroma cacao TCM_007360 I
TCM_027858 Theobroma cacao TCM_027858 I
Traes_6AS_4106E8E28 Triticum aestivum Traes_6AS_4106E8E28 I
Traes_6BS_AB5909D02 Triticum aestivum Traes_6BS_AB5909D02 I
Traes_6DS_6268D31AE Triticum aestivum Traes_6DS_6268D31AE I
Traes_7AL_EA6F4FFDE Triticum aestivum Traes_7AL_EA6F4FFDE I
Traes_7DL_A5ECEDA95 Triticum aestivum Traes_7DL_A5ECEDA95 I
TRIUR3_11107 Triticum urartu TRIUR3_11107 I
TRIUR3_32095 Triticum urartu TRIUR3_32095 I
VIT_09s0054g00440 Vitis vinifera VIT_09s0054g00440 I
Ca_01471 Cicer arietinum Ca_01471 I
Ca_17522 Cicer arietinum Ca_17522 I
Cla013127 Citrullus lanatus Cla013127 I
Cla015736 Citrullus lanatus Cla015736 I
Pm013048 Prunus mume Pm013048 I
Pm022163 Prunus mume Pm022163 I
29838.m001724 Ricinus communis 29838.m001724 I
cassava12169.valid.m1 Manihot esculenta cassava12169.valid.m1 I
cassava6876.valid.m1 Manihot esculenta cassava6876.valid.m1 I
Cucsa.218190 Cucumis sativus Cucsa.218190 I
Cucsa.359570 Cucumis sativus Cucsa.359570 I
e_gw1.226.30.1 Physcomitrella patens e_gw1.226.30.1 I
fgenesh1_pm.scaffold_69000012 Physcomitrella patens fgenesh1_pm.scaffold_69000012 I
fgenesh2_pm.scaffold_111000001 Physcomitrella patens fgenesh2_pm.scaffold_111000001 I
gw1.68.123.1 Physcomitrella patens gw1.68.123.1 I
mgf016112m Mimulus guttatus mgf016112m I
Aquca_007_00522 Aquilegia coerulea Aquca_007_00522 I
Aquca_010_00250 Aquilegia coerulea Aquca_010_00250 I
Aquca_018_00034 Aquilegia coerulea Aquca_018_00034 I
Bostr.26675s0048 Boechera stricta Bostr.26675s0048 I
Bostr.7867s0254 Boechera stricta Bostr.7867s0254 I
Cagra.1757s0004 Capsella grandiflora Cagra.1757s0004 I
Cagra.2171s0014 Capsella grandiflora Cagra.2171s0014 I
Cagra.2346s0015 Capsella grandiflora Cagra.2346s0015 I
Carubv10006355m.g Capsella rubella Carubv10006355m.g I
Carubv10009866m.g Capsella rubella Carubv10009866m.g I
Carubv10016131m.g Capsella rubella Carubv10016131m.g I
Ciclev10027306m.g Citrus clementina Ciclev10027306m.g I
Eucgr.J03166 Eucalyptus grandis Eucgr.J03166 I
evm.TU.supercontig_155.28 Carica papaya evm.TU.supercontig_155.28 I
Gorai.008G017800 Gossypium raimondii Gorai.008G017800 I
orange1.1g022728m.g Citrus sinensis orange1.1g022728m.g I
Pavir.Da00166 Panicum virgatum Pavir.Da00166 I
Pavir.Db00254 Panicum virgatum Pavir.Db00254 I
SapurV1A.0036s1170 Salix purpurea SapurV1A.0036s1170 I
SapurV1A.0187s0150 Salix purpurea SapurV1A.0187s0150 I
Thhalv10011695m.g Eutrema salsugineum Thhalv10011695m.g I
Thhalv10020970m.g Eutrema salsugineum Thhalv10020970m.g I
Thhalv10025795m.g Eutrema salsugineum Thhalv10025795m.g I
PK11000.1 Cannabis sativa PK11000.1 I
LjSGA_067759.1 Lotus japonicus LjSGA_067759.1 I
PDK_20s1340921g001 Phoenix dactylifera PDK_20s1340921g001 I
PDK_20s1879741g001 Phoenix dactylifera PDK_20s1879741g001 I